Wall clock time and date at job start Wed Apr 1 2020 03:05:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42898 * 109.46873 * 2 1 4 4 C 1.42903 * 114.00250 * 179.97438 * 3 2 1 5 5 C 1.52994 * 109.47210 * 180.02562 * 4 3 2 6 6 C 1.53003 * 109.47262 * 180.02562 * 5 4 3 7 7 N 1.46892 * 109.47390 * 179.97438 * 6 5 4 8 8 C 1.46842 * 111.00192 * 293.95474 * 7 6 5 9 9 C 1.53039 * 109.52666 * 185.84212 * 8 7 6 10 10 C 1.53123 * 109.27546 * 300.81951 * 9 8 7 11 11 C 1.53120 * 109.21163 * 57.62218 * 10 9 8 12 12 H 1.09003 * 109.50116 * 182.43702 * 11 10 9 13 13 N 1.46500 * 109.50551 * 62.32206 * 11 10 9 14 14 C 1.34773 * 120.00283 * 84.99474 * 13 11 10 15 15 O 1.21277 * 119.99690 * 0.02562 * 14 13 11 16 16 C 1.50700 * 120.00050 * 180.02562 * 14 13 11 17 17 S 1.81000 * 109.47082 * 180.02562 * 16 14 13 18 18 C 1.76203 * 99.99784 * 180.02562 * 17 16 14 19 19 H 1.07997 * 119.99968 * 359.97438 * 18 17 16 20 20 C 1.38805 * 119.99763 * 180.02562 * 18 17 16 21 21 N 1.31627 * 119.99950 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 119.99844 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47200 * 59.99472 * 22 20 18 24 24 H 1.48493 * 109.46969 * 179.97438 * 22 20 18 25 25 H 1.48498 * 109.46728 * 299.99658 * 22 20 18 26 26 C 1.46848 * 110.99938 * 58.16403 * 7 6 5 27 27 H 1.08999 * 109.46555 * 294.17605 * 26 7 6 28 28 C 1.53008 * 109.46220 * 54.15669 * 26 7 6 29 29 H 1.08997 * 109.47224 * 60.00267 * 1 2 3 30 30 H 1.09008 * 109.46680 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47127 * 299.99576 * 1 2 3 32 32 H 1.09001 * 109.47127 * 240.00424 * 2 1 3 33 33 H 1.08997 * 109.47224 * 119.99733 * 2 1 3 34 34 H 1.08992 * 109.46808 * 60.00021 * 4 3 2 35 35 H 1.09004 * 109.46913 * 300.00555 * 4 3 2 36 36 H 1.09001 * 109.47256 * 60.00400 * 5 4 3 37 37 H 1.08991 * 109.47606 * 299.99838 * 5 4 3 38 38 H 1.08997 * 109.47211 * 59.99509 * 6 5 4 39 39 H 1.09004 * 109.46865 * 300.00315 * 6 5 4 40 40 H 1.08997 * 109.46434 * 65.82550 * 8 7 6 41 41 H 1.09006 * 109.45199 * 305.85056 * 8 7 6 42 42 H 1.08999 * 109.50420 * 180.88146 * 9 8 7 43 43 H 1.09002 * 109.53427 * 60.77649 * 9 8 7 44 44 H 1.09002 * 109.52319 * 177.56011 * 10 9 8 45 45 H 1.08995 * 109.52318 * 297.68693 * 10 9 8 46 46 H 0.97005 * 119.99213 * 265.00018 * 13 11 10 47 47 H 1.09002 * 109.47252 * 300.00187 * 16 14 13 48 48 H 1.09002 * 109.46869 * 59.99963 * 16 14 13 49 49 H 0.96999 * 120.00228 * 180.02562 * 21 20 18 50 50 H 1.08997 * 109.47127 * 60.00255 * 28 26 7 51 51 H 1.08996 * 109.46794 * 179.97438 * 28 26 7 52 52 H 1.08991 * 109.46722 * 299.99948 * 28 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4602 0.0006 5 6 3.8252 2.9385 0.0012 6 6 5.3505 3.0594 0.0012 7 7 5.7292 4.4787 0.0011 8 6 5.3270 5.1306 -1.2517 9 6 5.8637 6.5636 -1.2778 10 6 5.3060 7.3342 -0.0778 11 6 5.6967 6.6084 1.2126 12 1 5.2655 7.1291 2.0677 13 7 7.1561 6.5852 1.3382 14 6 7.8022 7.6338 1.8854 15 8 7.1753 8.5964 2.2743 16 6 9.3035 7.6101 2.0141 17 16 9.8675 9.1489 2.7822 18 6 11.6053 8.8588 2.8081 19 1 12.0045 7.9352 2.4158 20 6 12.4611 9.8170 3.3337 21 7 11.9745 10.9425 3.8123 22 14 14.3034 9.5092 3.3618 23 1 14.7937 9.3128 1.9739 24 1 14.9911 10.6770 3.9687 25 1 14.5898 8.2932 4.1647 26 6 5.1661 5.1736 1.1658 27 1 4.0791 5.1917 1.0875 28 6 5.5730 4.4379 2.4442 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0278 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 3.8340 0.9766 -0.8891 35 1 3.8333 0.9768 0.8908 36 1 3.4222 3.4217 0.8912 37 1 3.4229 3.4223 -0.8887 38 1 5.7533 2.5762 -0.8890 39 1 5.7533 2.5755 0.8909 40 1 4.2393 5.1490 -1.3187 41 1 5.7337 4.5751 -2.0968 42 1 5.5518 7.0523 -2.2009 43 1 6.9523 6.5462 -1.2251 44 1 5.7198 8.3425 -0.0682 45 1 4.2199 7.3868 -0.1516 46 1 7.6574 5.8151 1.0274 47 1 9.6018 6.7645 2.6338 48 1 9.7513 7.5118 1.0252 49 1 12.5725 11.6122 4.1793 50 1 6.6600 4.4195 2.5225 51 1 5.1555 4.9539 3.3088 52 1 5.1936 3.4167 2.4120 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717862167.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:05:55 Heat of formation + Delta-G solvation = -118.017292 kcal Electronic energy + Delta-G solvation = -28361.108548 eV Core-core repulsion = 24485.325495 eV Total energy + Delta-G solvation = -3875.783053 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.192 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.47267 -39.87492 -38.93663 -36.28308 -34.57258 -34.41589 -33.22702 -32.46493 -31.09891 -30.14904 -27.90840 -27.57436 -26.43666 -24.07460 -23.69347 -23.07828 -22.49838 -21.41527 -19.91221 -19.73621 -18.00841 -17.63759 -17.40800 -17.11000 -16.86310 -16.64990 -16.45965 -16.12091 -15.76949 -15.70521 -15.42577 -14.97572 -14.85338 -14.52282 -14.47915 -14.11744 -13.95321 -13.51992 -13.44554 -13.30885 -13.15089 -13.00603 -12.94533 -12.88871 -12.84595 -12.64107 -12.53859 -12.37238 -12.25740 -11.95038 -11.86957 -11.71941 -11.60227 -11.42302 -11.17666 -11.11342 -10.84818 -10.54078 -10.25367 -9.97567 -9.23523 -8.64177 -8.32774 -6.10590 1.29102 1.44801 1.48411 1.58774 1.69923 2.28577 2.37157 2.69412 2.94482 3.01086 3.35995 3.63234 3.80537 3.92463 4.01619 4.05667 4.10649 4.14497 4.17098 4.30433 4.33033 4.34314 4.39516 4.40849 4.47822 4.50304 4.52571 4.54155 4.58649 4.68785 4.75940 4.81824 4.84566 4.88372 4.93910 4.99485 5.00838 5.04863 5.15785 5.22470 5.24947 5.27158 5.32478 5.43010 5.43770 5.61635 6.10533 6.15057 6.21233 6.30755 6.65312 7.08244 7.35798 8.76176 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.023905 B = 0.001837 C = 0.001797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1171.010667 B =15241.322405 C =15577.212605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.051 3.949 3 O -0.418 6.418 4 C 0.065 3.935 5 C -0.150 4.150 6 C 0.060 3.940 7 N -0.532 5.532 8 C 0.058 3.942 9 C -0.112 4.112 10 C -0.133 4.133 11 C 0.155 3.845 12 H 0.067 0.933 13 N -0.692 5.692 14 C 0.534 3.466 15 O -0.569 6.569 16 C -0.128 4.128 17 S -0.149 6.149 18 C -0.548 4.548 19 H 0.082 0.918 20 C 0.014 3.986 21 N -0.911 5.911 22 Si 0.998 3.002 23 H -0.262 1.262 24 H -0.279 1.279 25 H -0.262 1.262 26 C 0.084 3.916 27 H 0.064 0.936 28 C -0.147 4.147 29 H 0.056 0.944 30 H 0.089 0.911 31 H 0.055 0.945 32 H 0.057 0.943 33 H 0.055 0.945 34 H 0.059 0.941 35 H 0.057 0.943 36 H 0.063 0.937 37 H 0.065 0.935 38 H 0.090 0.910 39 H 0.089 0.911 40 H 0.042 0.958 41 H 0.090 0.910 42 H 0.076 0.924 43 H 0.060 0.940 44 H 0.041 0.959 45 H 0.079 0.921 46 H 0.416 0.584 47 H 0.106 0.894 48 H 0.105 0.895 49 H 0.271 0.729 50 H 0.060 0.940 51 H 0.054 0.946 52 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.351 -25.941 -11.981 34.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.025 4.025 3 O -0.338 6.338 4 C -0.012 4.012 5 C -0.190 4.190 6 C -0.067 4.067 7 N -0.256 5.256 8 C -0.069 4.069 9 C -0.149 4.149 10 C -0.172 4.172 11 C 0.049 3.951 12 H 0.085 0.915 13 N -0.345 5.345 14 C 0.320 3.680 15 O -0.448 6.448 16 C -0.279 4.279 17 S 0.078 5.922 18 C -0.696 4.696 19 H 0.100 0.900 20 C -0.190 4.190 21 N -0.548 5.548 22 Si 0.819 3.181 23 H -0.187 1.187 24 H -0.204 1.204 25 H -0.186 1.186 26 C -0.025 4.025 27 H 0.082 0.918 28 C -0.204 4.204 29 H 0.075 0.925 30 H 0.107 0.893 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.073 0.927 34 H 0.077 0.923 35 H 0.075 0.925 36 H 0.082 0.918 37 H 0.084 0.916 38 H 0.109 0.891 39 H 0.107 0.893 40 H 0.060 0.940 41 H 0.108 0.892 42 H 0.094 0.906 43 H 0.079 0.921 44 H 0.060 0.940 45 H 0.098 0.902 46 H 0.254 0.746 47 H 0.124 0.876 48 H 0.123 0.877 49 H 0.080 0.920 50 H 0.080 0.920 51 H 0.073 0.927 52 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -19.979 -24.017 -11.235 33.200 hybrid contribution 1.114 -1.085 -0.344 1.593 sum -18.866 -25.102 -11.579 33.468 Atomic orbital electron populations 1.21777 0.93354 1.03277 1.02497 1.22618 0.96077 0.83012 1.00829 1.87863 1.22396 1.27929 1.95617 1.22480 0.80510 0.97153 1.01029 1.22157 0.98301 0.95713 1.02785 1.22205 0.91780 0.88441 1.04311 1.62135 1.59165 1.02484 1.01814 1.22127 0.98399 0.94370 0.92027 1.21521 1.00994 0.95019 0.97404 1.21955 1.01279 0.98708 0.95223 1.21013 0.80175 0.96110 0.97754 0.91472 1.45669 1.07457 1.19615 1.61799 1.20015 0.88814 0.82637 0.76583 1.90675 1.68876 1.35123 1.50117 1.23352 0.95208 1.03760 1.05574 1.85542 1.06123 1.21191 1.79366 1.23187 0.91815 1.07213 1.47378 0.90018 1.26117 1.05212 0.93940 0.93773 1.70179 1.37718 1.08014 1.38864 0.85014 0.75765 0.78141 0.79139 1.18686 1.20362 1.18648 1.21768 0.97421 0.91473 0.91850 0.91809 1.21898 1.02454 1.00724 0.95352 0.92450 0.89266 0.92575 0.92522 0.92684 0.92282 0.92505 0.91784 0.91643 0.89134 0.89260 0.94003 0.89163 0.90555 0.92111 0.93991 0.90242 0.74599 0.87565 0.87694 0.92021 0.92046 0.92713 0.90505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 10.28 71.98 0.74 -0.65 16 2 C 0.05 0.54 6.66 71.98 0.48 1.02 16 3 O -0.42 -6.55 10.34 -148.98 -1.54 -8.09 16 4 C 0.07 0.72 5.94 71.98 0.43 1.14 16 5 C -0.15 -1.70 4.78 30.59 0.15 -1.55 16 6 C 0.06 0.60 4.79 86.31 0.41 1.02 16 7 N -0.53 -7.33 4.17 -871.09 -3.64 -10.96 16 8 C 0.06 0.79 5.05 86.33 0.44 1.22 16 9 C -0.11 -2.00 5.93 30.65 0.18 -1.82 16 10 C -0.13 -3.01 5.67 30.68 0.17 -2.84 16 11 C 0.15 3.67 2.26 45.05 0.10 3.78 16 12 H 0.07 1.94 7.58 -2.39 -0.02 1.92 16 13 N -0.69 -18.52 3.71 -442.27 -1.64 -20.16 16 14 C 0.53 20.27 7.81 87.66 0.68 20.95 16 15 O -0.57 -26.90 15.53 -3.02 -0.05 -26.95 16 16 C -0.13 -5.22 6.16 71.24 0.44 -4.78 16 17 S -0.15 -8.44 20.57 -56.49 -1.16 -9.61 16 18 C -0.55 -31.76 9.50 67.96 0.65 -31.12 16 19 H 0.08 4.39 7.80 -2.91 -0.02 4.37 16 20 C 0.01 0.83 5.49 84.86 0.47 1.29 16 21 N -0.91 -56.58 13.22 21.65 0.29 -56.29 16 22 Si 1.00 43.98 29.55 68.60 2.03 46.01 16 23 H -0.26 -10.97 7.11 99.48 0.71 -10.26 16 24 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 25 H -0.26 -10.94 7.11 99.48 0.71 -10.23 16 26 C 0.08 1.40 1.54 44.94 0.07 1.47 16 27 H 0.06 1.03 6.61 -2.39 -0.02 1.02 16 28 C -0.15 -2.37 8.52 71.98 0.61 -1.76 16 29 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 30 H 0.09 0.46 8.14 -2.38 -0.02 0.44 16 31 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 32 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 33 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 34 H 0.06 0.51 8.14 -2.39 -0.02 0.50 16 35 H 0.06 0.53 8.14 -2.38 -0.02 0.51 16 36 H 0.06 0.88 6.24 -2.39 -0.01 0.86 16 37 H 0.06 0.84 6.68 -2.39 -0.02 0.82 16 38 H 0.09 0.73 8.06 -2.39 -0.02 0.71 16 39 H 0.09 0.83 6.33 -2.38 -0.02 0.81 16 40 H 0.04 0.55 6.75 -2.39 -0.02 0.53 16 41 H 0.09 1.01 8.06 -2.38 -0.02 0.99 16 42 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 43 H 0.06 1.26 7.73 -2.39 -0.02 1.24 16 44 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 45 H 0.08 1.55 8.14 -2.39 -0.02 1.54 16 46 H 0.42 9.29 7.90 -92.70 -0.73 8.55 16 47 H 0.11 3.94 8.14 -2.39 -0.02 3.92 16 48 H 0.10 3.93 8.14 -2.39 -0.02 3.91 16 49 H 0.27 15.63 8.31 -92.71 -0.77 14.86 16 50 H 0.06 1.10 7.39 -2.39 -0.02 1.08 16 51 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 52 H 0.08 0.96 6.07 -2.39 -0.01 0.94 16 Total: -1.00 -75.91 416.17 0.46 -75.45 By element: Atomic # 1 Polarization: 23.08 SS G_CDS: 0.16 Total: 23.24 kcal Atomic # 6 Polarization: -18.65 SS G_CDS: 6.02 Total: -12.63 kcal Atomic # 7 Polarization: -82.42 SS G_CDS: -4.99 Total: -87.41 kcal Atomic # 8 Polarization: -33.45 SS G_CDS: -1.59 Total: -35.04 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 2.03 Total: 46.01 kcal Atomic # 16 Polarization: -8.44 SS G_CDS: -1.16 Total: -9.61 kcal Total: -75.91 0.46 -75.45 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717862167.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.567 kcal (2) G-P(sol) polarization free energy of solvation -75.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds