Wall clock time and date at job start Wed Apr 1 2020 03:05:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42900 * 109.46830 * 2 1 4 4 C 1.42899 * 113.99716 * 179.97438 * 3 2 1 5 5 C 1.53001 * 109.46881 * 180.02562 * 4 3 2 6 6 C 1.53004 * 109.47244 * 179.97438 * 5 4 3 7 7 N 1.46895 * 109.47423 * 179.97438 * 6 5 4 8 8 C 1.46855 * 111.00007 * 314.21060 * 7 6 5 9 9 C 1.53035 * 109.52239 * 174.15943 * 8 7 6 10 10 C 1.53122 * 109.31001 * 59.16204 * 9 8 7 11 11 C 1.53122 * 109.15526 * 302.40182 * 10 9 8 12 12 H 1.08997 * 109.50039 * 297.63469 * 11 10 9 13 13 N 1.46498 * 109.50288 * 177.55902 * 11 10 9 14 14 C 1.34785 * 120.00121 * 85.07423 * 13 11 10 15 15 O 1.21274 * 119.99583 * 0.02562 * 14 13 11 16 16 C 1.50700 * 119.99805 * 180.02562 * 14 13 11 17 17 S 1.81001 * 109.46620 * 180.02562 * 16 14 13 18 18 C 1.76205 * 99.99519 * 179.97438 * 17 16 14 19 19 H 1.07991 * 120.00563 * 0.02562 * 18 17 16 20 20 C 1.38805 * 119.99790 * 179.97438 * 18 17 16 21 21 N 1.31627 * 120.00247 * 180.02562 * 20 18 17 22 22 Si 1.86800 * 119.99893 * 359.97438 * 20 18 17 23 23 H 1.48503 * 109.46845 * 90.00333 * 22 20 18 24 24 H 1.48503 * 109.47399 * 209.99822 * 22 20 18 25 25 H 1.48498 * 109.47295 * 330.00429 * 22 20 18 26 26 C 1.46839 * 111.00158 * 190.00160 * 7 6 5 27 27 H 1.09001 * 109.46681 * 65.82437 * 26 7 6 28 28 C 1.52999 * 109.45360 * 305.84857 * 26 7 6 29 29 H 1.08997 * 109.47438 * 299.99744 * 1 2 3 30 30 H 1.08992 * 109.47159 * 60.00550 * 1 2 3 31 31 H 1.09010 * 109.47021 * 180.02562 * 1 2 3 32 32 H 1.08993 * 109.47115 * 239.99585 * 2 1 3 33 33 H 1.09002 * 109.47089 * 119.99499 * 2 1 3 34 34 H 1.08996 * 109.47224 * 60.00211 * 4 3 2 35 35 H 1.09003 * 109.46986 * 299.99569 * 4 3 2 36 36 H 1.09005 * 109.47243 * 59.99977 * 5 4 3 37 37 H 1.09002 * 109.47262 * 299.99966 * 5 4 3 38 38 H 1.09005 * 109.47007 * 59.99848 * 6 5 4 39 39 H 1.09002 * 109.46976 * 300.00157 * 6 5 4 40 40 H 1.08997 * 109.45824 * 294.17784 * 8 7 6 41 41 H 1.09000 * 109.45734 * 54.15113 * 8 7 6 42 42 H 1.09005 * 109.49652 * 179.11964 * 9 8 7 43 43 H 1.08998 * 109.50318 * 299.23587 * 9 8 7 44 44 H 1.08999 * 109.55298 * 182.47718 * 10 9 8 45 45 H 1.08997 * 109.49346 * 62.28379 * 10 9 8 46 46 H 0.96999 * 120.00150 * 265.08142 * 13 11 10 47 47 H 1.08997 * 109.47388 * 60.00287 * 16 14 13 48 48 H 1.09002 * 109.47074 * 300.00315 * 16 14 13 49 49 H 0.96995 * 120.00442 * 180.02562 * 21 20 18 50 50 H 1.08999 * 109.47087 * 299.95208 * 28 26 7 51 51 H 1.08998 * 109.47156 * 59.95310 * 28 26 7 52 52 H 1.09002 * 109.47092 * 179.97438 * 28 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4601 0.0006 5 6 3.8252 2.9384 0.0012 6 6 5.3505 3.0593 0.0024 7 7 5.7292 4.4786 0.0024 8 6 4.9421 5.2333 -0.9812 9 6 5.2578 6.7253 -0.8526 10 6 6.7541 6.9484 -1.0890 11 6 7.5517 6.1131 -0.0837 12 1 7.3234 6.4465 0.9286 13 7 8.9848 6.2757 -0.3407 14 6 9.6516 7.3175 0.1947 15 8 9.0652 8.1201 0.8896 16 6 11.1256 7.4850 -0.0701 17 16 11.7269 8.9652 0.7804 18 6 13.4252 8.9178 0.3130 19 1 13.7890 8.1225 -0.3205 20 6 14.2953 9.9034 0.7583 21 7 15.5639 9.8683 0.4088 22 14 13.6657 11.2803 1.8524 23 1 13.7890 10.8769 3.2762 24 1 14.4674 12.5075 1.6145 25 1 12.2402 11.5512 1.5363 26 6 7.1695 4.6389 -0.2345 27 1 7.4115 4.3024 -1.2426 28 6 7.9493 3.8035 0.7828 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0278 0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 3.8339 0.9765 -0.8891 35 1 3.8332 0.9768 0.8909 36 1 3.4221 3.4217 0.8912 37 1 3.4228 3.4222 -0.8888 38 1 5.7540 2.5759 -0.8873 39 1 5.7526 2.5756 0.8927 40 1 5.1945 4.8939 -1.9857 41 1 3.8800 5.0699 -0.7987 42 1 4.6850 7.2835 -1.5933 43 1 4.9927 7.0684 0.1474 44 1 6.9911 8.0039 -0.9551 45 1 7.0118 6.6420 -2.1028 46 1 9.4538 5.6336 -0.8962 47 1 11.2927 7.5884 -1.1422 48 1 11.6626 6.6110 0.2986 49 1 16.1720 10.5568 0.7203 50 1 7.7078 4.1403 1.7909 51 1 7.6773 2.7535 0.6755 52 1 9.0185 3.9220 0.6069 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717862168.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:05:58 Heat of formation + Delta-G solvation = -94.747899 kcal Electronic energy + Delta-G solvation = -27781.795577 eV Core-core repulsion = 23907.021561 eV Total energy + Delta-G solvation = -3874.774016 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.192 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.36318 -38.90558 -38.36777 -35.50120 -33.74221 -32.94692 -32.43250 -31.60939 -30.39641 -28.88715 -27.00302 -25.85127 -25.59197 -23.72248 -23.27126 -21.71462 -21.22632 -20.40981 -19.93672 -17.86467 -17.26759 -16.85718 -16.53216 -16.38818 -15.70889 -15.57027 -15.20485 -15.07726 -14.94963 -14.50494 -14.36317 -14.15410 -14.00212 -13.61849 -13.30016 -13.22816 -13.03635 -12.78798 -12.58725 -12.45994 -12.32238 -12.19243 -11.99446 -11.95894 -11.83672 -11.52993 -11.42828 -11.25969 -11.18091 -11.00472 -10.93275 -10.77064 -10.61529 -10.47611 -10.06368 -9.84684 -9.47550 -9.00511 -8.92363 -8.63178 -8.48899 -6.90642 -6.28343 -3.99860 2.73041 2.99045 3.03381 3.29720 3.34397 3.51497 3.57077 3.81187 4.33970 4.39255 4.47058 4.51640 4.55757 4.61759 4.65565 4.75027 4.79534 4.82954 4.87299 4.92553 4.96561 4.99131 5.02487 5.10823 5.11412 5.22095 5.24054 5.28896 5.34331 5.40866 5.44968 5.53097 5.57158 5.62319 5.63138 5.69986 5.72697 5.77415 5.79221 5.91359 5.99323 6.02186 6.11920 6.21420 6.52979 6.69271 6.77972 6.81905 7.63966 7.94694 8.42133 8.52727 9.17999 10.80917 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.034912 B = 0.001639 C = 0.001608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 801.826000 B =17078.406003 C =17409.452465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.057 3.943 3 O -0.390 6.390 4 C 0.064 3.936 5 C -0.123 4.123 6 C 0.060 3.940 7 N -0.528 5.528 8 C 0.047 3.953 9 C -0.114 4.114 10 C -0.134 4.134 11 C 0.157 3.843 12 H 0.097 0.903 13 N -0.732 5.732 14 C 0.533 3.467 15 O -0.517 6.517 16 C -0.124 4.124 17 S -0.141 6.141 18 C -0.522 4.522 19 H 0.088 0.912 20 C 0.096 3.904 21 N -0.881 5.881 22 Si 0.856 3.144 23 H -0.267 1.267 24 H -0.274 1.274 25 H -0.235 1.235 26 C 0.079 3.921 27 H 0.044 0.956 28 C -0.149 4.149 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.070 0.930 32 H 0.047 0.953 33 H 0.048 0.952 34 H 0.047 0.953 35 H 0.050 0.950 36 H 0.082 0.918 37 H 0.075 0.925 38 H 0.035 0.965 39 H 0.082 0.918 40 H 0.033 0.967 41 H 0.085 0.915 42 H 0.070 0.930 43 H 0.075 0.925 44 H 0.074 0.926 45 H 0.059 0.941 46 H 0.397 0.603 47 H 0.096 0.904 48 H 0.096 0.904 49 H 0.271 0.729 50 H 0.067 0.933 51 H 0.056 0.944 52 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.022 -20.721 -4.276 34.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.019 4.019 3 O -0.310 6.310 4 C -0.013 4.013 5 C -0.161 4.161 6 C -0.068 4.068 7 N -0.254 5.254 8 C -0.081 4.081 9 C -0.153 4.153 10 C -0.172 4.172 11 C 0.051 3.949 12 H 0.115 0.885 13 N -0.386 5.386 14 C 0.319 3.681 15 O -0.391 6.391 16 C -0.275 4.275 17 S 0.085 5.915 18 C -0.669 4.669 19 H 0.106 0.894 20 C -0.112 4.112 21 N -0.517 5.517 22 Si 0.681 3.319 23 H -0.192 1.192 24 H -0.199 1.199 25 H -0.159 1.159 26 C -0.029 4.029 27 H 0.062 0.938 28 C -0.207 4.207 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.089 0.911 32 H 0.065 0.935 33 H 0.066 0.934 34 H 0.065 0.935 35 H 0.068 0.932 36 H 0.100 0.900 37 H 0.093 0.907 38 H 0.053 0.947 39 H 0.100 0.900 40 H 0.051 0.949 41 H 0.103 0.897 42 H 0.088 0.912 43 H 0.093 0.907 44 H 0.093 0.907 45 H 0.078 0.922 46 H 0.231 0.769 47 H 0.114 0.886 48 H 0.114 0.886 49 H 0.080 0.920 50 H 0.086 0.914 51 H 0.075 0.925 52 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -28.032 -18.942 -2.638 33.935 hybrid contribution 1.414 -1.267 -1.531 2.439 sum -26.619 -20.208 -4.169 33.680 Atomic orbital electron populations 1.21749 0.93668 1.02290 1.03227 1.22457 0.95683 0.83743 1.00050 1.87880 1.21147 1.26496 1.95441 1.22423 0.81264 0.97413 1.00170 1.21674 0.95209 0.94981 1.04216 1.22014 0.94582 0.88938 1.01236 1.61876 1.03722 1.09474 1.50280 1.22295 0.98622 0.94112 0.93027 1.21549 0.95819 0.94951 1.02945 1.22015 0.94827 1.01515 0.98877 1.20838 0.79930 0.93193 1.00914 0.88468 1.45978 1.09354 1.29131 1.54102 1.20240 0.88715 0.80349 0.78795 1.90699 1.69368 1.42010 1.36998 1.23284 0.93928 1.04905 1.05377 1.84795 1.10119 1.29412 1.67128 1.22325 0.91218 1.16032 1.37360 0.89430 1.24707 0.94047 0.97259 0.95235 1.69935 1.03123 1.34638 1.44052 0.86739 0.81621 0.81868 0.81651 1.19201 1.19950 1.15913 1.21790 0.87755 0.95310 0.98079 0.93767 1.21924 0.99917 0.98958 0.99873 0.91768 0.91832 0.91081 0.93479 0.93382 0.93485 0.93166 0.89955 0.90678 0.94720 0.90010 0.94907 0.89716 0.91165 0.90677 0.90700 0.92214 0.76946 0.88551 0.88568 0.91955 0.91353 0.92498 0.91629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.73 10.28 37.16 0.38 -0.35 16 2 C 0.06 0.33 6.66 37.16 0.25 0.58 16 3 O -0.39 -3.20 10.34 -35.23 -0.36 -3.57 16 4 C 0.06 0.42 5.94 37.16 0.22 0.64 16 5 C -0.12 -0.83 4.83 -26.73 -0.13 -0.96 16 6 C 0.06 0.42 4.36 -3.82 -0.02 0.40 16 7 N -0.53 -4.56 4.64 -226.69 -1.05 -5.61 16 8 C 0.05 0.38 4.85 -3.83 -0.02 0.36 16 9 C -0.11 -1.05 6.09 -26.65 -0.16 -1.21 16 10 C -0.13 -1.48 5.58 -26.61 -0.15 -1.63 16 11 C 0.16 1.83 2.05 -67.85 -0.14 1.69 16 12 H 0.10 1.40 7.58 -51.93 -0.39 1.01 16 13 N -0.73 -9.20 4.41 -53.73 -0.24 -9.44 16 14 C 0.53 9.33 7.81 -10.98 -0.09 9.24 16 15 O -0.52 -11.04 15.53 5.56 0.09 -10.96 16 16 C -0.12 -2.38 6.16 36.01 0.22 -2.16 16 17 S -0.14 -3.57 18.55 -107.50 -1.99 -5.56 16 18 C -0.52 -15.04 10.04 30.94 0.31 -14.73 16 19 H 0.09 2.63 8.03 -52.49 -0.42 2.21 16 20 C 0.10 2.81 5.50 -17.43 -0.10 2.72 16 21 N -0.88 -26.61 13.97 55.49 0.78 -25.83 16 22 Si 0.86 21.84 27.74 -169.99 -4.71 17.13 16 23 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 24 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 25 H -0.24 -5.99 6.74 56.52 0.38 -5.61 16 26 C 0.08 0.72 1.98 -67.73 -0.13 0.59 16 27 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 28 C -0.15 -1.30 8.63 37.16 0.32 -0.98 16 29 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.07 0.22 8.14 -51.92 -0.42 -0.20 16 32 H 0.05 0.23 8.14 -51.93 -0.42 -0.19 16 33 H 0.05 0.24 8.14 -51.93 -0.42 -0.18 16 34 H 0.05 0.27 8.14 -51.93 -0.42 -0.16 16 35 H 0.05 0.29 8.14 -51.93 -0.42 -0.14 16 36 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.07 0.52 6.21 -51.93 -0.32 0.20 16 38 H 0.03 0.23 8.08 -51.93 -0.42 -0.19 16 39 H 0.08 0.55 6.84 -51.93 -0.36 0.19 16 40 H 0.03 0.26 8.14 -51.93 -0.42 -0.16 16 41 H 0.08 0.62 5.81 -51.93 -0.30 0.32 16 42 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 44 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 45 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 46 H 0.40 3.91 8.44 -40.82 -0.34 3.56 16 47 H 0.10 1.72 8.14 -51.92 -0.42 1.30 16 48 H 0.10 1.71 8.14 -51.91 -0.42 1.29 16 49 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 50 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 51 H 0.06 0.41 6.55 -51.93 -0.34 0.07 16 52 H 0.06 0.58 7.50 -51.93 -0.39 0.19 16 LS Contribution 418.65 15.07 6.31 6.31 Total: -1.00 -33.68 418.65 -10.05 -43.73 By element: Atomic # 1 Polarization: 9.24 SS G_CDS: -9.63 Total: -0.39 kcal Atomic # 6 Polarization: -6.58 SS G_CDS: 0.77 Total: -5.80 kcal Atomic # 7 Polarization: -40.37 SS G_CDS: -0.51 Total: -40.88 kcal Atomic # 8 Polarization: -14.25 SS G_CDS: -0.28 Total: -14.52 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -4.71 Total: 17.13 kcal Atomic # 16 Polarization: -3.57 SS G_CDS: -1.99 Total: -5.56 kcal Total LS contribution 6.31 Total: 6.31 kcal Total: -33.68 -10.05 -43.73 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717862168.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.021 kcal (2) G-P(sol) polarization free energy of solvation -33.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds