Wall clock time and date at job start Wed Apr 1 2020 03:05:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42900 * 109.46830 * 2 1 4 4 C 1.42899 * 113.99716 * 179.97438 * 3 2 1 5 5 C 1.53001 * 109.46881 * 180.02562 * 4 3 2 6 6 C 1.53004 * 109.47244 * 179.97438 * 5 4 3 7 7 N 1.46895 * 109.47423 * 179.97438 * 6 5 4 8 8 C 1.46855 * 111.00007 * 314.21060 * 7 6 5 9 9 C 1.53035 * 109.52239 * 174.15943 * 8 7 6 10 10 C 1.53122 * 109.31001 * 59.16204 * 9 8 7 11 11 C 1.53122 * 109.15526 * 302.40182 * 10 9 8 12 12 H 1.08997 * 109.50039 * 297.63469 * 11 10 9 13 13 N 1.46498 * 109.50288 * 177.55902 * 11 10 9 14 14 C 1.34785 * 120.00121 * 85.07423 * 13 11 10 15 15 O 1.21274 * 119.99583 * 0.02562 * 14 13 11 16 16 C 1.50700 * 119.99805 * 180.02562 * 14 13 11 17 17 S 1.81001 * 109.46620 * 180.02562 * 16 14 13 18 18 C 1.76205 * 99.99519 * 179.97438 * 17 16 14 19 19 H 1.07991 * 120.00563 * 0.02562 * 18 17 16 20 20 C 1.38805 * 119.99790 * 179.97438 * 18 17 16 21 21 N 1.31627 * 120.00247 * 180.02562 * 20 18 17 22 22 Si 1.86800 * 119.99893 * 359.97438 * 20 18 17 23 23 H 1.48503 * 109.46845 * 90.00333 * 22 20 18 24 24 H 1.48503 * 109.47399 * 209.99822 * 22 20 18 25 25 H 1.48498 * 109.47295 * 330.00429 * 22 20 18 26 26 C 1.46839 * 111.00158 * 190.00160 * 7 6 5 27 27 H 1.09001 * 109.46681 * 65.82437 * 26 7 6 28 28 C 1.52999 * 109.45360 * 305.84857 * 26 7 6 29 29 H 1.08997 * 109.47438 * 299.99744 * 1 2 3 30 30 H 1.08992 * 109.47159 * 60.00550 * 1 2 3 31 31 H 1.09010 * 109.47021 * 180.02562 * 1 2 3 32 32 H 1.08993 * 109.47115 * 239.99585 * 2 1 3 33 33 H 1.09002 * 109.47089 * 119.99499 * 2 1 3 34 34 H 1.08996 * 109.47224 * 60.00211 * 4 3 2 35 35 H 1.09003 * 109.46986 * 299.99569 * 4 3 2 36 36 H 1.09005 * 109.47243 * 59.99977 * 5 4 3 37 37 H 1.09002 * 109.47262 * 299.99966 * 5 4 3 38 38 H 1.09005 * 109.47007 * 59.99848 * 6 5 4 39 39 H 1.09002 * 109.46976 * 300.00157 * 6 5 4 40 40 H 1.08997 * 109.45824 * 294.17784 * 8 7 6 41 41 H 1.09000 * 109.45734 * 54.15113 * 8 7 6 42 42 H 1.09005 * 109.49652 * 179.11964 * 9 8 7 43 43 H 1.08998 * 109.50318 * 299.23587 * 9 8 7 44 44 H 1.08999 * 109.55298 * 182.47718 * 10 9 8 45 45 H 1.08997 * 109.49346 * 62.28379 * 10 9 8 46 46 H 0.96999 * 120.00150 * 265.08142 * 13 11 10 47 47 H 1.08997 * 109.47388 * 60.00287 * 16 14 13 48 48 H 1.09002 * 109.47074 * 300.00315 * 16 14 13 49 49 H 0.96995 * 120.00442 * 180.02562 * 21 20 18 50 50 H 1.08999 * 109.47087 * 299.95208 * 28 26 7 51 51 H 1.08998 * 109.47156 * 59.95310 * 28 26 7 52 52 H 1.09002 * 109.47092 * 179.97438 * 28 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4601 0.0006 5 6 3.8252 2.9384 0.0012 6 6 5.3505 3.0593 0.0024 7 7 5.7292 4.4786 0.0024 8 6 4.9421 5.2333 -0.9812 9 6 5.2578 6.7253 -0.8526 10 6 6.7541 6.9484 -1.0890 11 6 7.5517 6.1131 -0.0837 12 1 7.3234 6.4465 0.9286 13 7 8.9848 6.2757 -0.3407 14 6 9.6516 7.3175 0.1947 15 8 9.0652 8.1201 0.8896 16 6 11.1256 7.4850 -0.0701 17 16 11.7269 8.9652 0.7804 18 6 13.4252 8.9178 0.3130 19 1 13.7890 8.1225 -0.3205 20 6 14.2953 9.9034 0.7583 21 7 15.5639 9.8683 0.4088 22 14 13.6657 11.2803 1.8524 23 1 13.7890 10.8769 3.2762 24 1 14.4674 12.5075 1.6145 25 1 12.2402 11.5512 1.5363 26 6 7.1695 4.6389 -0.2345 27 1 7.4115 4.3024 -1.2426 28 6 7.9493 3.8035 0.7828 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0278 0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 3.8339 0.9765 -0.8891 35 1 3.8332 0.9768 0.8909 36 1 3.4221 3.4217 0.8912 37 1 3.4228 3.4222 -0.8888 38 1 5.7540 2.5759 -0.8873 39 1 5.7526 2.5756 0.8927 40 1 5.1945 4.8939 -1.9857 41 1 3.8800 5.0699 -0.7987 42 1 4.6850 7.2835 -1.5933 43 1 4.9927 7.0684 0.1474 44 1 6.9911 8.0039 -0.9551 45 1 7.0118 6.6420 -2.1028 46 1 9.4538 5.6336 -0.8962 47 1 11.2927 7.5884 -1.1422 48 1 11.6626 6.6110 0.2986 49 1 16.1720 10.5568 0.7203 50 1 7.7078 4.1403 1.7909 51 1 7.6773 2.7535 0.6755 52 1 9.0185 3.9220 0.6069 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717862168.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:05:58 Heat of formation + Delta-G solvation = -117.976959 kcal Electronic energy + Delta-G solvation = -27782.802865 eV Core-core repulsion = 23907.021561 eV Total energy + Delta-G solvation = -3875.781304 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.192 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.33841 -39.95026 -38.98058 -36.43485 -34.68137 -34.61389 -33.63000 -32.38176 -31.24749 -30.02846 -27.94358 -27.72162 -26.47677 -24.46692 -23.68128 -22.47856 -22.05884 -21.53275 -20.78757 -19.83384 -17.93161 -17.89128 -17.36161 -17.31691 -17.07225 -16.58935 -16.43121 -16.23232 -15.78961 -15.69394 -15.29535 -15.06588 -14.99250 -14.83446 -14.67820 -14.39127 -13.91735 -13.68996 -13.39780 -13.35596 -13.28802 -13.13806 -13.01751 -12.91724 -12.67516 -12.64501 -12.52768 -12.37993 -12.14472 -11.99537 -11.87134 -11.83976 -11.75822 -11.41716 -11.35092 -11.16920 -10.92774 -10.53649 -10.52805 -10.09106 -9.26650 -8.99107 -8.51468 -6.21995 0.98869 1.31357 1.46775 1.55243 1.58007 2.12564 2.25318 2.60407 2.73249 2.87001 3.06446 3.58207 3.75585 3.85789 3.95547 4.04510 4.04903 4.15867 4.17268 4.20675 4.23990 4.29693 4.36609 4.40746 4.47074 4.47858 4.49085 4.52619 4.58104 4.63822 4.69859 4.80786 4.84785 4.89108 4.91024 4.96539 5.02508 5.08101 5.17137 5.20279 5.22272 5.27854 5.28411 5.36115 5.47594 5.70898 6.09920 6.11526 6.11574 6.30103 6.47930 6.94019 7.21384 8.60928 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.034912 B = 0.001639 C = 0.001608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 801.826000 B =17078.406003 C =17409.452465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.051 3.949 3 O -0.415 6.415 4 C 0.064 3.936 5 C -0.116 4.116 6 C 0.064 3.936 7 N -0.542 5.542 8 C 0.051 3.949 9 C -0.111 4.111 10 C -0.130 4.130 11 C 0.157 3.843 12 H 0.067 0.933 13 N -0.706 5.706 14 C 0.539 3.461 15 O -0.560 6.560 16 C -0.111 4.111 17 S -0.176 6.176 18 C -0.529 4.529 19 H 0.063 0.937 20 C 0.048 3.952 21 N -0.917 5.917 22 Si 0.913 3.087 23 H -0.262 1.262 24 H -0.259 1.259 25 H -0.238 1.238 26 C 0.088 3.912 27 H 0.061 0.939 28 C -0.147 4.147 29 H 0.056 0.944 30 H 0.057 0.943 31 H 0.088 0.912 32 H 0.056 0.944 33 H 0.055 0.945 34 H 0.058 0.942 35 H 0.056 0.944 36 H 0.068 0.932 37 H 0.074 0.926 38 H 0.047 0.953 39 H 0.085 0.915 40 H 0.043 0.957 41 H 0.093 0.907 42 H 0.084 0.916 43 H 0.059 0.941 44 H 0.044 0.956 45 H 0.073 0.927 46 H 0.415 0.585 47 H 0.113 0.887 48 H 0.114 0.886 49 H 0.277 0.723 50 H 0.050 0.950 51 H 0.076 0.924 52 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.481 -22.535 -5.067 36.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.026 4.026 3 O -0.335 6.335 4 C -0.013 4.013 5 C -0.154 4.154 6 C -0.063 4.063 7 N -0.268 5.268 8 C -0.076 4.076 9 C -0.149 4.149 10 C -0.169 4.169 11 C 0.052 3.948 12 H 0.085 0.915 13 N -0.360 5.360 14 C 0.324 3.676 15 O -0.438 6.438 16 C -0.262 4.262 17 S 0.050 5.950 18 C -0.676 4.676 19 H 0.081 0.919 20 C -0.158 4.158 21 N -0.555 5.555 22 Si 0.735 3.265 23 H -0.187 1.187 24 H -0.183 1.183 25 H -0.162 1.162 26 C -0.021 4.021 27 H 0.079 0.921 28 C -0.205 4.205 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.107 0.893 32 H 0.075 0.925 33 H 0.073 0.927 34 H 0.076 0.924 35 H 0.075 0.925 36 H 0.087 0.913 37 H 0.092 0.908 38 H 0.065 0.935 39 H 0.103 0.897 40 H 0.061 0.939 41 H 0.111 0.889 42 H 0.102 0.898 43 H 0.078 0.922 44 H 0.063 0.937 45 H 0.092 0.908 46 H 0.252 0.748 47 H 0.132 0.868 48 H 0.132 0.868 49 H 0.086 0.914 50 H 0.069 0.931 51 H 0.095 0.905 52 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -29.498 -20.808 -3.460 36.264 hybrid contribution 1.788 -0.848 -1.348 2.395 sum -27.709 -21.656 -4.808 35.495 Atomic orbital electron populations 1.21775 0.93238 1.03287 1.02589 1.22628 0.96151 0.82936 1.00843 1.87848 1.22077 1.27970 1.95614 1.22469 0.80706 0.97146 1.00996 1.21582 0.95050 0.95286 1.03461 1.22007 0.94594 0.87779 1.01920 1.61837 1.03348 1.10765 1.50832 1.22273 0.99056 0.92918 0.93396 1.21527 0.94514 0.96329 1.02531 1.21962 0.96120 0.99501 0.99298 1.20898 0.78890 0.95459 0.99530 0.91501 1.45716 1.09871 1.27666 1.52725 1.19919 0.87955 0.81005 0.78716 1.90693 1.69901 1.43951 1.39282 1.23269 0.95196 1.02159 1.05536 1.84744 1.07921 1.33777 1.68511 1.22467 0.93215 1.15268 1.36699 0.91910 1.25532 0.94250 0.99497 0.96510 1.70009 1.04244 1.35864 1.45366 0.85888 0.81025 0.79629 0.79961 1.18718 1.18307 1.16179 1.21675 0.88339 0.93001 0.99042 0.92124 1.21916 0.99805 1.00045 0.98730 0.92486 0.92357 0.89296 0.92531 0.92678 0.92390 0.92534 0.91344 0.90778 0.93514 0.89702 0.93881 0.88875 0.89760 0.92192 0.93684 0.90792 0.74835 0.86849 0.86784 0.91377 0.93054 0.90493 0.91647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 10.28 71.98 0.74 -0.54 16 2 C 0.05 0.51 6.66 71.98 0.48 0.99 16 3 O -0.41 -6.27 10.34 -148.98 -1.54 -7.81 16 4 C 0.06 0.70 5.94 71.98 0.43 1.12 16 5 C -0.12 -1.35 4.83 30.60 0.15 -1.20 16 6 C 0.06 0.72 4.36 86.31 0.38 1.10 16 7 N -0.54 -8.24 4.64 -871.11 -4.04 -12.29 16 8 C 0.05 0.71 4.85 86.32 0.42 1.13 16 9 C -0.11 -1.91 6.09 30.65 0.19 -1.72 16 10 C -0.13 -2.76 5.58 30.68 0.17 -2.59 16 11 C 0.16 3.51 2.05 45.04 0.09 3.60 16 12 H 0.07 1.96 7.58 -2.39 -0.02 1.94 16 13 N -0.71 -16.66 4.41 -442.28 -1.95 -18.61 16 14 C 0.54 18.45 7.81 87.66 0.68 19.14 16 15 O -0.56 -24.18 15.53 -3.01 -0.05 -24.23 16 16 C -0.11 -4.13 6.16 71.24 0.44 -3.69 16 17 S -0.18 -8.92 18.55 -56.49 -1.05 -9.97 16 18 C -0.53 -30.81 10.04 67.96 0.68 -30.13 16 19 H 0.06 3.84 8.03 -2.91 -0.02 3.82 16 20 C 0.05 2.80 5.50 84.86 0.47 3.26 16 21 N -0.92 -55.86 13.97 21.65 0.30 -55.56 16 22 Si 0.91 45.22 27.74 68.60 1.90 47.12 16 23 H -0.26 -12.70 7.11 99.48 0.71 -11.99 16 24 H -0.26 -12.01 7.11 99.48 0.71 -11.30 16 25 H -0.24 -11.81 6.74 99.48 0.67 -11.13 16 26 C 0.09 1.40 1.98 44.94 0.09 1.49 16 27 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 28 C -0.15 -2.24 8.63 71.98 0.62 -1.62 16 29 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 30 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 31 H 0.09 0.40 8.14 -2.38 -0.02 0.39 16 32 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 33 H 0.05 0.46 8.14 -2.39 -0.02 0.44 16 34 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 35 H 0.06 0.53 8.14 -2.39 -0.02 0.52 16 36 H 0.07 0.99 8.14 -2.38 -0.02 0.97 16 37 H 0.07 0.88 6.21 -2.39 -0.01 0.86 16 38 H 0.05 0.44 8.08 -2.38 -0.02 0.42 16 39 H 0.08 0.92 6.84 -2.39 -0.02 0.90 16 40 H 0.04 0.54 8.14 -2.39 -0.02 0.52 16 41 H 0.09 1.18 5.81 -2.39 -0.01 1.16 16 42 H 0.08 1.22 8.14 -2.38 -0.02 1.20 16 43 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 44 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 45 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 46 H 0.41 7.00 8.44 -92.71 -0.78 6.22 16 47 H 0.11 3.87 8.14 -2.40 -0.02 3.85 16 48 H 0.11 3.87 8.14 -2.39 -0.02 3.86 16 49 H 0.28 15.60 8.31 -92.71 -0.77 14.83 16 50 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 51 H 0.08 0.87 6.55 -2.39 -0.02 0.86 16 52 H 0.06 0.99 7.50 -2.39 -0.02 0.97 16 Total: -1.00 -73.91 418.65 -0.34 -74.25 By element: Atomic # 1 Polarization: 16.69 SS G_CDS: 0.06 Total: 16.75 kcal Atomic # 6 Polarization: -15.68 SS G_CDS: 6.02 Total: -9.66 kcal Atomic # 7 Polarization: -80.77 SS G_CDS: -5.69 Total: -86.45 kcal Atomic # 8 Polarization: -30.45 SS G_CDS: -1.59 Total: -32.04 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 1.90 Total: 47.12 kcal Atomic # 16 Polarization: -8.92 SS G_CDS: -1.05 Total: -9.97 kcal Total: -73.91 -0.34 -74.25 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717862168.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.728 kcal (2) G-P(sol) polarization free energy of solvation -73.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.249 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds