Wall clock time and date at job start Wed Apr 1 2020 03:06:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42898 * 109.47177 * 2 1 4 4 C 1.42906 * 113.99821 * 180.02562 * 3 2 1 5 5 C 1.53006 * 109.46748 * 179.97438 * 4 3 2 6 6 C 1.52999 * 109.46626 * 179.97438 * 5 4 3 7 7 N 1.46906 * 109.46904 * 179.97438 * 6 5 4 8 8 C 1.46852 * 110.99654 * 66.05060 * 7 6 5 9 9 C 1.53037 * 109.52487 * 174.15959 * 8 7 6 10 10 C 1.53124 * 109.27601 * 59.17452 * 9 8 7 11 11 C 1.53113 * 109.16460 * 302.35114 * 10 9 8 12 12 H 1.09003 * 109.50381 * 177.63498 * 11 10 9 13 13 N 1.46506 * 109.50130 * 297.71118 * 11 10 9 14 14 C 1.34779 * 119.99815 * 275.00307 * 13 11 10 15 15 O 1.21277 * 120.00309 * 359.97438 * 14 13 11 16 16 C 1.50703 * 119.99821 * 180.02562 * 14 13 11 17 17 S 1.81000 * 109.47049 * 179.97438 * 16 14 13 18 18 C 1.76198 * 99.99939 * 179.97438 * 17 16 14 19 19 H 1.08005 * 119.99799 * 0.02562 * 18 17 16 20 20 C 1.38799 * 120.00293 * 179.97438 * 18 17 16 21 21 N 1.31622 * 120.00074 * 180.02562 * 20 18 17 22 22 Si 1.86801 * 119.99578 * 0.02562 * 20 18 17 23 23 H 1.48498 * 109.47204 * 90.00105 * 22 20 18 24 24 H 1.48506 * 109.46822 * 209.99949 * 22 20 18 25 25 H 1.48498 * 109.47335 * 329.99983 * 22 20 18 26 26 C 1.46840 * 111.00292 * 301.84182 * 7 6 5 27 27 H 1.09000 * 109.46520 * 65.82209 * 26 7 6 28 28 C 1.52997 * 109.46290 * 305.85401 * 26 7 6 29 29 H 1.08995 * 109.47176 * 60.00128 * 1 2 3 30 30 H 1.09005 * 109.47059 * 180.02562 * 1 2 3 31 31 H 1.09006 * 109.46632 * 299.99994 * 1 2 3 32 32 H 1.09002 * 109.47235 * 239.99597 * 2 1 3 33 33 H 1.09000 * 109.47628 * 120.00000 * 2 1 3 34 34 H 1.09000 * 109.47490 * 59.99859 * 4 3 2 35 35 H 1.09001 * 109.47232 * 299.99213 * 4 3 2 36 36 H 1.08993 * 109.46955 * 299.99993 * 5 4 3 37 37 H 1.09000 * 109.47050 * 59.99822 * 5 4 3 38 38 H 1.08993 * 109.47839 * 299.99931 * 6 5 4 39 39 H 1.09000 * 109.47160 * 60.00369 * 6 5 4 40 40 H 1.09003 * 109.46219 * 294.17542 * 8 7 6 41 41 H 1.08999 * 109.46547 * 54.15218 * 8 7 6 42 42 H 1.08996 * 109.50330 * 179.12119 * 9 8 7 43 43 H 1.08996 * 109.50104 * 299.20166 * 9 8 7 44 44 H 1.09004 * 109.51872 * 62.25867 * 10 9 8 45 45 H 1.09000 * 109.52279 * 182.43949 * 10 9 8 46 46 H 0.96992 * 119.99811 * 94.99645 * 13 11 10 47 47 H 1.08996 * 109.46646 * 300.00014 * 16 14 13 48 48 H 1.09001 * 109.47160 * 59.99738 * 16 14 13 49 49 H 0.97005 * 119.99845 * 180.02562 * 21 20 18 50 50 H 1.09003 * 109.47480 * 59.99668 * 28 26 7 51 51 H 1.09001 * 109.47773 * 180.02562 * 28 26 7 52 52 H 1.09008 * 109.47063 * 299.99917 * 28 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4309 1.4600 -0.0006 5 6 3.8254 2.9384 -0.0012 6 6 5.3506 3.0591 -0.0012 7 7 5.7295 4.4784 -0.0023 8 6 5.3273 5.1314 1.2500 9 6 5.8640 6.5644 1.2750 10 6 5.3065 7.3339 0.0743 11 6 5.6983 6.6066 -1.2149 12 1 5.2687 7.1267 -2.0711 13 7 7.1580 6.5832 -1.3388 14 6 7.8046 7.6311 -1.8867 15 8 7.1783 8.5933 -2.2775 16 6 9.3060 7.6067 -2.0147 17 16 9.8710 9.1446 -2.7840 18 6 11.6086 8.8539 -2.8089 19 1 12.0073 7.9304 -2.4157 20 6 12.4650 9.8112 -3.3350 21 7 13.7630 9.5937 -3.3541 22 14 11.7753 11.4081 -4.0158 23 1 11.7100 12.4211 -2.9319 24 1 12.6562 11.9036 -5.1039 25 1 10.4116 11.1693 -4.5529 26 6 5.1665 5.1724 -1.1675 27 1 4.0795 5.1907 -1.0892 28 6 5.5730 4.4356 -2.4453 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8901 32 1 1.8934 -0.5139 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 3.8334 0.9766 -0.8908 35 1 3.8341 0.9765 0.8892 36 1 3.4223 3.4216 -0.8911 37 1 3.4229 3.4222 0.8888 38 1 5.7534 2.5760 0.8890 39 1 5.7534 2.5752 -0.8910 40 1 4.2395 5.1498 1.3170 41 1 5.7339 4.5768 2.0957 42 1 5.5522 7.0538 2.1976 43 1 6.9526 6.5462 1.2226 44 1 4.2201 7.3858 0.1475 45 1 5.7203 8.3423 0.0639 46 1 7.6588 5.8135 -1.0265 47 1 9.7534 7.5090 -1.0256 48 1 9.6042 6.7604 -2.6336 49 1 14.3615 10.2630 -3.7214 50 1 5.1935 3.4143 -2.4122 51 1 5.1556 4.9508 -3.3104 52 1 6.6601 4.4168 -2.5237 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717862170.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:06:03 Heat of formation + Delta-G solvation = -95.221057 kcal Electronic energy + Delta-G solvation = -28409.594433 eV Core-core repulsion = 24534.799899 eV Total energy + Delta-G solvation = -3874.794534 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.192 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.56843 -38.83501 -38.27973 -35.40143 -33.52957 -32.59737 -32.40241 -31.57709 -30.44038 -28.91375 -27.03415 -25.83303 -25.55933 -23.40705 -23.26590 -22.40887 -21.56145 -20.38724 -18.93756 -17.87472 -17.22458 -16.90292 -16.51995 -16.21461 -15.80909 -15.44126 -15.22220 -14.98891 -14.93421 -14.66984 -14.21647 -14.06475 -13.85575 -13.50379 -13.28876 -13.14287 -12.92110 -12.76767 -12.71485 -12.45585 -12.30892 -12.20719 -12.01356 -11.94585 -11.82768 -11.67083 -11.42794 -11.23280 -11.19953 -10.98041 -10.88683 -10.70711 -10.55665 -10.37741 -10.06257 -9.81965 -9.39580 -8.97185 -8.83964 -8.56783 -8.44525 -6.86579 -6.25413 -3.96272 2.84582 3.09182 3.14755 3.34805 3.38413 3.53438 3.55686 3.80671 4.36568 4.40334 4.43245 4.54969 4.57103 4.61167 4.73102 4.78632 4.81367 4.82347 4.87679 4.89788 4.96357 5.05156 5.08994 5.12913 5.13855 5.23944 5.26681 5.32145 5.38595 5.40742 5.48138 5.53079 5.56098 5.61709 5.63747 5.68106 5.76845 5.82735 5.86145 5.87953 6.03959 6.09905 6.14203 6.18203 6.66058 6.71050 6.79315 6.85214 7.84322 7.97820 8.45593 8.64680 9.21089 10.83878 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.026683 B = 0.001869 C = 0.001842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1049.113227 B =14980.562747 C =15196.416165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.057 3.943 3 O -0.392 6.392 4 C 0.067 3.933 5 C -0.158 4.158 6 C 0.056 3.944 7 N -0.527 5.527 8 C 0.053 3.947 9 C -0.116 4.116 10 C -0.135 4.135 11 C 0.158 3.842 12 H 0.090 0.910 13 N -0.718 5.718 14 C 0.530 3.470 15 O -0.525 6.525 16 C -0.122 4.122 17 S -0.143 6.143 18 C -0.520 4.520 19 H 0.088 0.912 20 C 0.096 3.904 21 N -0.881 5.881 22 Si 0.857 3.143 23 H -0.268 1.268 24 H -0.275 1.275 25 H -0.235 1.235 26 C 0.072 3.928 27 H 0.057 0.943 28 C -0.149 4.149 29 H 0.063 0.937 30 H 0.070 0.930 31 H 0.062 0.938 32 H 0.048 0.952 33 H 0.047 0.953 34 H 0.049 0.951 35 H 0.048 0.952 36 H 0.075 0.925 37 H 0.071 0.929 38 H 0.077 0.923 39 H 0.083 0.917 40 H 0.036 0.964 41 H 0.075 0.925 42 H 0.066 0.934 43 H 0.074 0.926 44 H 0.065 0.935 45 H 0.074 0.926 46 H 0.406 0.594 47 H 0.095 0.905 48 H 0.095 0.905 49 H 0.270 0.730 50 H 0.058 0.942 51 H 0.062 0.938 52 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.239 -20.068 9.716 32.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.020 4.020 3 O -0.311 6.311 4 C -0.010 4.010 5 C -0.197 4.197 6 C -0.073 4.073 7 N -0.251 5.251 8 C -0.074 4.074 9 C -0.154 4.154 10 C -0.174 4.174 11 C 0.052 3.948 12 H 0.108 0.892 13 N -0.372 5.372 14 C 0.316 3.684 15 O -0.401 6.401 16 C -0.273 4.273 17 S 0.083 5.917 18 C -0.668 4.668 19 H 0.106 0.894 20 C -0.113 4.113 21 N -0.518 5.518 22 Si 0.682 3.318 23 H -0.193 1.193 24 H -0.200 1.200 25 H -0.159 1.159 26 C -0.037 4.037 27 H 0.075 0.925 28 C -0.207 4.207 29 H 0.082 0.918 30 H 0.089 0.911 31 H 0.081 0.919 32 H 0.066 0.934 33 H 0.065 0.935 34 H 0.067 0.933 35 H 0.067 0.933 36 H 0.093 0.907 37 H 0.090 0.910 38 H 0.096 0.904 39 H 0.102 0.898 40 H 0.055 0.945 41 H 0.093 0.907 42 H 0.084 0.916 43 H 0.093 0.907 44 H 0.083 0.917 45 H 0.093 0.907 46 H 0.241 0.759 47 H 0.113 0.887 48 H 0.113 0.887 49 H 0.080 0.920 50 H 0.076 0.924 51 H 0.081 0.919 52 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -24.698 -18.207 8.978 31.970 hybrid contribution 0.265 -1.118 0.445 1.232 sum -24.433 -19.324 9.424 32.545 Atomic orbital electron populations 1.21749 0.93708 1.02288 1.03187 1.22455 0.95665 0.83791 1.00040 1.87895 1.21327 1.26482 1.95439 1.22412 0.81166 0.97279 1.00156 1.22252 0.98257 0.95574 1.03660 1.22184 0.92012 0.89695 1.03375 1.62154 1.59075 1.01637 1.02256 1.22157 0.98090 0.95512 0.91678 1.21555 1.01970 0.93895 0.97966 1.22001 1.00446 1.00281 0.94654 1.20879 0.81601 0.94029 0.98247 0.89210 1.45889 1.06663 1.20956 1.63701 1.20259 0.89470 0.82242 0.76462 1.90682 1.68376 1.33176 1.47836 1.23265 0.93806 1.04936 1.05308 1.84758 1.07237 1.20610 1.79070 1.22337 0.88743 1.08437 1.47289 0.89434 1.24706 0.94122 0.98206 0.94257 1.69941 1.02089 1.35495 1.44279 0.86735 0.81403 0.83746 0.79962 1.19259 1.20008 1.15928 1.21933 0.97286 0.93417 0.91027 0.92483 1.21922 1.03067 0.99811 0.95888 0.91808 0.91066 0.91866 0.93408 0.93467 0.93261 0.93347 0.90684 0.91000 0.90440 0.89832 0.94545 0.90669 0.91563 0.90739 0.91679 0.90705 0.75882 0.88678 0.88650 0.92006 0.92355 0.91879 0.91219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.78 10.28 37.16 0.38 -0.39 16 2 C 0.06 0.35 6.66 37.16 0.25 0.59 16 3 O -0.39 -3.32 10.34 -35.23 -0.36 -3.69 16 4 C 0.07 0.44 5.94 37.16 0.22 0.66 16 5 C -0.16 -1.05 4.78 -26.73 -0.13 -1.18 16 6 C 0.06 0.35 4.80 -3.82 -0.02 0.33 16 7 N -0.53 -4.13 4.17 -226.69 -0.95 -5.08 16 8 C 0.05 0.41 5.05 -3.83 -0.02 0.39 16 9 C -0.12 -1.07 5.93 -26.65 -0.16 -1.23 16 10 C -0.14 -1.46 5.67 -26.61 -0.15 -1.61 16 11 C 0.16 1.80 2.26 -67.85 -0.15 1.64 16 12 H 0.09 1.19 7.58 -51.93 -0.39 0.79 16 13 N -0.72 -9.28 3.71 -53.73 -0.20 -9.48 16 14 C 0.53 9.40 7.81 -10.98 -0.09 9.31 16 15 O -0.53 -11.25 15.53 5.56 0.09 -11.17 16 16 C -0.12 -2.40 6.16 36.01 0.22 -2.18 16 17 S -0.14 -3.66 18.55 -107.50 -1.99 -5.66 16 18 C -0.52 -15.14 10.04 30.94 0.31 -14.83 16 19 H 0.09 2.66 8.03 -52.48 -0.42 2.23 16 20 C 0.10 2.82 5.50 -17.43 -0.10 2.72 16 21 N -0.88 -26.78 13.97 55.49 0.78 -26.00 16 22 Si 0.86 21.99 27.74 -169.99 -4.71 17.28 16 23 H -0.27 -6.79 7.11 56.52 0.40 -6.39 16 24 H -0.27 -6.79 7.11 56.52 0.40 -6.38 16 25 H -0.24 -6.04 6.74 56.52 0.38 -5.66 16 26 C 0.07 0.63 1.54 -67.73 -0.10 0.52 16 27 H 0.06 0.49 6.61 -51.93 -0.34 0.15 16 28 C -0.15 -1.27 8.52 37.16 0.32 -0.95 16 29 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 31 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.05 0.25 8.14 -51.93 -0.42 -0.17 16 33 H 0.05 0.24 8.14 -51.93 -0.42 -0.18 16 34 H 0.05 0.29 8.14 -51.93 -0.42 -0.14 16 35 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 36 H 0.07 0.57 6.24 -51.93 -0.32 0.25 16 37 H 0.07 0.53 6.68 -51.93 -0.35 0.18 16 38 H 0.08 0.45 8.06 -51.93 -0.42 0.03 16 39 H 0.08 0.51 6.32 -51.93 -0.33 0.19 16 40 H 0.04 0.28 6.76 -51.93 -0.35 -0.07 16 41 H 0.07 0.53 8.06 -51.93 -0.42 0.11 16 42 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.07 0.79 7.73 -51.93 -0.40 0.39 16 44 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 45 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 46 H 0.41 4.63 7.91 -40.82 -0.32 4.31 16 47 H 0.09 1.76 8.14 -51.92 -0.42 1.33 16 48 H 0.10 1.75 8.14 -51.91 -0.42 1.33 16 49 H 0.27 7.63 8.31 -40.82 -0.34 7.29 16 50 H 0.06 0.42 6.07 -51.93 -0.32 0.10 16 51 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 52 H 0.07 0.66 7.40 -51.92 -0.38 0.27 16 LS Contribution 413.48 15.07 6.23 6.23 Total: -1.00 -33.46 413.48 -9.76 -43.22 By element: Atomic # 1 Polarization: 9.96 SS G_CDS: -9.42 Total: 0.54 kcal Atomic # 6 Polarization: -6.98 SS G_CDS: 0.79 Total: -6.20 kcal Atomic # 7 Polarization: -40.19 SS G_CDS: -0.37 Total: -40.56 kcal Atomic # 8 Polarization: -14.58 SS G_CDS: -0.28 Total: -14.86 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -4.71 Total: 17.28 kcal Atomic # 16 Polarization: -3.66 SS G_CDS: -1.99 Total: -5.66 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -33.46 -9.76 -43.22 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717862170.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.000 kcal (2) G-P(sol) polarization free energy of solvation -33.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds