Wall clock time and date at job start Wed Apr 1 2020 03:06:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42898 * 109.47177 * 2 1 4 4 C 1.42906 * 113.99821 * 180.02562 * 3 2 1 5 5 C 1.53006 * 109.46748 * 179.97438 * 4 3 2 6 6 C 1.52999 * 109.46626 * 179.97438 * 5 4 3 7 7 N 1.46906 * 109.46904 * 179.97438 * 6 5 4 8 8 C 1.46852 * 110.99654 * 66.05060 * 7 6 5 9 9 C 1.53037 * 109.52487 * 174.15959 * 8 7 6 10 10 C 1.53124 * 109.27601 * 59.17452 * 9 8 7 11 11 C 1.53113 * 109.16460 * 302.35114 * 10 9 8 12 12 H 1.09003 * 109.50381 * 177.63498 * 11 10 9 13 13 N 1.46506 * 109.50130 * 297.71118 * 11 10 9 14 14 C 1.34779 * 119.99815 * 275.00307 * 13 11 10 15 15 O 1.21277 * 120.00309 * 359.97438 * 14 13 11 16 16 C 1.50703 * 119.99821 * 180.02562 * 14 13 11 17 17 S 1.81000 * 109.47049 * 179.97438 * 16 14 13 18 18 C 1.76198 * 99.99939 * 179.97438 * 17 16 14 19 19 H 1.08005 * 119.99799 * 0.02562 * 18 17 16 20 20 C 1.38799 * 120.00293 * 179.97438 * 18 17 16 21 21 N 1.31622 * 120.00074 * 180.02562 * 20 18 17 22 22 Si 1.86801 * 119.99578 * 0.02562 * 20 18 17 23 23 H 1.48498 * 109.47204 * 90.00105 * 22 20 18 24 24 H 1.48506 * 109.46822 * 209.99949 * 22 20 18 25 25 H 1.48498 * 109.47335 * 329.99983 * 22 20 18 26 26 C 1.46840 * 111.00292 * 301.84182 * 7 6 5 27 27 H 1.09000 * 109.46520 * 65.82209 * 26 7 6 28 28 C 1.52997 * 109.46290 * 305.85401 * 26 7 6 29 29 H 1.08995 * 109.47176 * 60.00128 * 1 2 3 30 30 H 1.09005 * 109.47059 * 180.02562 * 1 2 3 31 31 H 1.09006 * 109.46632 * 299.99994 * 1 2 3 32 32 H 1.09002 * 109.47235 * 239.99597 * 2 1 3 33 33 H 1.09000 * 109.47628 * 120.00000 * 2 1 3 34 34 H 1.09000 * 109.47490 * 59.99859 * 4 3 2 35 35 H 1.09001 * 109.47232 * 299.99213 * 4 3 2 36 36 H 1.08993 * 109.46955 * 299.99993 * 5 4 3 37 37 H 1.09000 * 109.47050 * 59.99822 * 5 4 3 38 38 H 1.08993 * 109.47839 * 299.99931 * 6 5 4 39 39 H 1.09000 * 109.47160 * 60.00369 * 6 5 4 40 40 H 1.09003 * 109.46219 * 294.17542 * 8 7 6 41 41 H 1.08999 * 109.46547 * 54.15218 * 8 7 6 42 42 H 1.08996 * 109.50330 * 179.12119 * 9 8 7 43 43 H 1.08996 * 109.50104 * 299.20166 * 9 8 7 44 44 H 1.09004 * 109.51872 * 62.25867 * 10 9 8 45 45 H 1.09000 * 109.52279 * 182.43949 * 10 9 8 46 46 H 0.96992 * 119.99811 * 94.99645 * 13 11 10 47 47 H 1.08996 * 109.46646 * 300.00014 * 16 14 13 48 48 H 1.09001 * 109.47160 * 59.99738 * 16 14 13 49 49 H 0.97005 * 119.99845 * 180.02562 * 21 20 18 50 50 H 1.09003 * 109.47480 * 59.99668 * 28 26 7 51 51 H 1.09001 * 109.47773 * 180.02562 * 28 26 7 52 52 H 1.09008 * 109.47063 * 299.99917 * 28 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4309 1.4600 -0.0006 5 6 3.8254 2.9384 -0.0012 6 6 5.3506 3.0591 -0.0012 7 7 5.7295 4.4784 -0.0023 8 6 5.3273 5.1314 1.2500 9 6 5.8640 6.5644 1.2750 10 6 5.3065 7.3339 0.0743 11 6 5.6983 6.6066 -1.2149 12 1 5.2687 7.1267 -2.0711 13 7 7.1580 6.5832 -1.3388 14 6 7.8046 7.6311 -1.8867 15 8 7.1783 8.5933 -2.2775 16 6 9.3060 7.6067 -2.0147 17 16 9.8710 9.1446 -2.7840 18 6 11.6086 8.8539 -2.8089 19 1 12.0073 7.9304 -2.4157 20 6 12.4650 9.8112 -3.3350 21 7 13.7630 9.5937 -3.3541 22 14 11.7753 11.4081 -4.0158 23 1 11.7100 12.4211 -2.9319 24 1 12.6562 11.9036 -5.1039 25 1 10.4116 11.1693 -4.5529 26 6 5.1665 5.1724 -1.1675 27 1 4.0795 5.1907 -1.0892 28 6 5.5730 4.4356 -2.4453 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8901 32 1 1.8934 -0.5139 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 3.8334 0.9766 -0.8908 35 1 3.8341 0.9765 0.8892 36 1 3.4223 3.4216 -0.8911 37 1 3.4229 3.4222 0.8888 38 1 5.7534 2.5760 0.8890 39 1 5.7534 2.5752 -0.8910 40 1 4.2395 5.1498 1.3170 41 1 5.7339 4.5768 2.0957 42 1 5.5522 7.0538 2.1976 43 1 6.9526 6.5462 1.2226 44 1 4.2201 7.3858 0.1475 45 1 5.7203 8.3423 0.0639 46 1 7.6588 5.8135 -1.0265 47 1 9.7534 7.5090 -1.0256 48 1 9.6042 6.7604 -2.6336 49 1 14.3615 10.2630 -3.7214 50 1 5.1935 3.4143 -2.4122 51 1 5.1556 4.9508 -3.3104 52 1 6.6601 4.4168 -2.5237 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717862170.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:06:02 Heat of formation + Delta-G solvation = -117.627659 kcal Electronic energy + Delta-G solvation = -28410.566056 eV Core-core repulsion = 24534.799899 eV Total energy + Delta-G solvation = -3875.766157 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.192 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.49173 -39.90522 -38.94253 -36.29739 -34.66492 -34.42707 -33.23447 -32.48697 -31.11636 -30.19977 -27.95032 -27.73374 -26.44240 -24.08300 -23.69634 -23.08649 -22.52351 -21.43813 -19.95676 -19.75996 -18.05291 -17.65323 -17.41972 -17.17792 -17.02624 -16.67537 -16.48675 -16.06017 -15.77559 -15.68624 -15.42153 -15.02468 -14.89046 -14.82378 -14.52771 -14.12259 -14.00277 -13.59296 -13.44846 -13.35060 -13.30502 -13.02234 -13.00178 -12.94338 -12.88304 -12.68099 -12.52608 -12.36357 -12.25333 -11.95285 -11.88352 -11.83649 -11.60471 -11.42745 -11.17951 -11.16061 -10.90038 -10.54513 -10.51535 -9.99999 -9.23809 -8.97417 -8.50426 -6.20699 1.01116 1.31901 1.47993 1.57878 1.64622 2.25203 2.32001 2.68166 2.74936 2.87855 2.95112 3.62574 3.80155 3.92071 3.96424 4.01813 4.10361 4.14011 4.16651 4.25889 4.30466 4.33969 4.38795 4.40493 4.47526 4.49216 4.50645 4.52458 4.58059 4.69193 4.75818 4.81537 4.84331 4.88193 4.93804 4.99453 5.00614 5.04765 5.15540 5.22161 5.24762 5.26838 5.32325 5.43590 5.59198 5.71909 6.10345 6.12486 6.14657 6.30171 6.60933 6.94903 7.30038 8.62033 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.026683 B = 0.001869 C = 0.001842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1049.113227 B =14980.562747 C =15196.416165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.051 3.949 3 O -0.417 6.417 4 C 0.065 3.935 5 C -0.150 4.150 6 C 0.060 3.940 7 N -0.533 5.533 8 C 0.058 3.942 9 C -0.112 4.112 10 C -0.132 4.132 11 C 0.155 3.845 12 H 0.071 0.929 13 N -0.692 5.692 14 C 0.535 3.465 15 O -0.566 6.566 16 C -0.110 4.110 17 S -0.174 6.174 18 C -0.530 4.530 19 H 0.061 0.939 20 C 0.047 3.953 21 N -0.917 5.917 22 Si 0.914 3.086 23 H -0.263 1.263 24 H -0.259 1.259 25 H -0.237 1.237 26 C 0.083 3.917 27 H 0.065 0.935 28 C -0.147 4.147 29 H 0.055 0.945 30 H 0.088 0.912 31 H 0.056 0.944 32 H 0.055 0.945 33 H 0.056 0.944 34 H 0.057 0.943 35 H 0.058 0.942 36 H 0.064 0.936 37 H 0.065 0.935 38 H 0.089 0.911 39 H 0.089 0.911 40 H 0.042 0.958 41 H 0.088 0.912 42 H 0.076 0.924 43 H 0.060 0.940 44 H 0.080 0.920 45 H 0.044 0.956 46 H 0.417 0.583 47 H 0.109 0.891 48 H 0.110 0.890 49 H 0.277 0.723 50 H 0.075 0.925 51 H 0.055 0.945 52 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.731 -21.646 10.473 35.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.025 4.025 3 O -0.338 6.338 4 C -0.012 4.012 5 C -0.189 4.189 6 C -0.068 4.068 7 N -0.257 5.257 8 C -0.070 4.070 9 C -0.150 4.150 10 C -0.171 4.171 11 C 0.050 3.950 12 H 0.089 0.911 13 N -0.345 5.345 14 C 0.321 3.679 15 O -0.445 6.445 16 C -0.261 4.261 17 S 0.052 5.948 18 C -0.677 4.677 19 H 0.079 0.921 20 C -0.159 4.159 21 N -0.555 5.555 22 Si 0.736 3.264 23 H -0.187 1.187 24 H -0.183 1.183 25 H -0.161 1.161 26 C -0.026 4.026 27 H 0.083 0.917 28 C -0.205 4.205 29 H 0.075 0.925 30 H 0.107 0.893 31 H 0.076 0.924 32 H 0.073 0.927 33 H 0.074 0.926 34 H 0.075 0.925 35 H 0.077 0.923 36 H 0.083 0.917 37 H 0.084 0.916 38 H 0.108 0.892 39 H 0.107 0.893 40 H 0.060 0.940 41 H 0.107 0.893 42 H 0.094 0.906 43 H 0.079 0.921 44 H 0.098 0.902 45 H 0.063 0.937 46 H 0.254 0.746 47 H 0.127 0.873 48 H 0.128 0.872 49 H 0.086 0.914 50 H 0.094 0.906 51 H 0.074 0.926 52 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -26.195 -19.839 9.760 34.278 hybrid contribution 0.662 -0.784 0.297 1.068 sum -25.533 -20.623 10.057 34.328 Atomic orbital electron populations 1.21775 0.93328 1.03279 1.02509 1.22618 0.96093 0.83016 1.00821 1.87862 1.22373 1.27917 1.95615 1.22486 0.80518 0.97198 1.01005 1.22153 0.98257 0.95676 1.02806 1.22201 0.91803 0.88501 1.04262 1.62145 1.59185 1.02460 1.01873 1.22130 0.98402 0.94448 0.92003 1.21525 1.01002 0.94963 0.97521 1.21955 1.01320 0.98757 0.95067 1.21028 0.79962 0.96070 0.97926 0.91118 1.45670 1.07573 1.19672 1.61584 1.19904 0.88511 0.82772 0.76748 1.90673 1.68763 1.34930 1.50093 1.23253 0.95357 1.01851 1.05606 1.84674 1.04784 1.25003 1.80295 1.22478 0.90868 1.07516 1.46853 0.92069 1.25546 0.94425 1.01341 0.94554 1.70016 1.03261 1.36920 1.45291 0.85869 0.80790 0.79902 0.79810 1.18741 1.18290 1.16136 1.21778 0.97469 0.91570 0.91781 0.91744 1.21905 1.02449 1.00720 0.95413 0.92546 0.89281 0.92443 0.92691 0.92555 0.92521 0.92341 0.91706 0.91635 0.89243 0.89299 0.93990 0.89327 0.90572 0.92112 0.90194 0.93700 0.74570 0.87320 0.87158 0.91396 0.90632 0.92550 0.92069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 10.28 71.98 0.74 -0.61 16 2 C 0.05 0.53 6.66 71.98 0.48 1.01 16 3 O -0.42 -6.42 10.34 -148.98 -1.54 -7.96 16 4 C 0.06 0.70 5.94 71.98 0.43 1.12 16 5 C -0.15 -1.63 4.78 30.60 0.15 -1.48 16 6 C 0.06 0.58 4.80 86.30 0.41 0.99 16 7 N -0.53 -6.98 4.17 -871.12 -3.63 -10.61 16 8 C 0.06 0.74 5.05 86.32 0.44 1.18 16 9 C -0.11 -1.88 5.93 30.65 0.18 -1.70 16 10 C -0.13 -2.75 5.67 30.67 0.17 -2.58 16 11 C 0.16 3.39 2.26 45.04 0.10 3.49 16 12 H 0.07 1.86 7.58 -2.39 -0.02 1.85 16 13 N -0.69 -17.19 3.71 -442.28 -1.64 -18.83 16 14 C 0.54 18.76 7.81 87.66 0.68 19.45 16 15 O -0.57 -24.42 15.53 -3.02 -0.05 -24.47 16 16 C -0.11 -4.24 6.16 71.24 0.44 -3.80 16 17 S -0.17 -8.93 18.55 -56.49 -1.05 -9.98 16 18 C -0.53 -31.24 10.04 67.95 0.68 -30.55 16 19 H 0.06 3.81 8.03 -2.91 -0.02 3.78 16 20 C 0.05 2.77 5.50 84.86 0.47 3.23 16 21 N -0.92 -56.25 13.97 21.65 0.30 -55.94 16 22 Si 0.91 45.51 27.74 68.60 1.90 47.41 16 23 H -0.26 -12.76 7.11 99.48 0.71 -12.06 16 24 H -0.26 -12.04 7.11 99.48 0.71 -11.33 16 25 H -0.24 -11.82 6.74 99.48 0.67 -11.15 16 26 C 0.08 1.28 1.54 44.94 0.07 1.35 16 27 H 0.06 0.97 6.61 -2.39 -0.02 0.95 16 28 C -0.15 -2.23 8.52 71.98 0.61 -1.61 16 29 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 30 H 0.09 0.45 8.14 -2.38 -0.02 0.43 16 31 H 0.06 0.57 8.14 -2.38 -0.02 0.55 16 32 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 33 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 34 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 35 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 36 H 0.06 0.85 6.24 -2.39 -0.01 0.83 16 37 H 0.06 0.81 6.68 -2.39 -0.02 0.79 16 38 H 0.09 0.71 8.06 -2.39 -0.02 0.69 16 39 H 0.09 0.81 6.32 -2.39 -0.02 0.79 16 40 H 0.04 0.52 6.76 -2.39 -0.02 0.51 16 41 H 0.09 0.96 8.06 -2.39 -0.02 0.94 16 42 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 43 H 0.06 1.20 7.73 -2.39 -0.02 1.18 16 44 H 0.08 1.43 8.14 -2.38 -0.02 1.41 16 45 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 46 H 0.42 8.75 7.91 -92.71 -0.73 8.02 16 47 H 0.11 3.92 8.14 -2.40 -0.02 3.90 16 48 H 0.11 3.95 8.14 -2.40 -0.02 3.93 16 49 H 0.28 15.68 8.31 -92.70 -0.77 14.91 16 50 H 0.07 0.89 6.07 -2.39 -0.01 0.88 16 51 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 52 H 0.06 1.03 7.40 -2.38 -0.02 1.02 16 Total: -1.00 -72.89 413.48 0.47 -72.42 By element: Atomic # 1 Polarization: 18.36 SS G_CDS: 0.12 Total: 18.48 kcal Atomic # 6 Polarization: -16.57 SS G_CDS: 6.06 Total: -10.51 kcal Atomic # 7 Polarization: -80.42 SS G_CDS: -4.97 Total: -85.39 kcal Atomic # 8 Polarization: -30.84 SS G_CDS: -1.59 Total: -32.43 kcal Atomic # 14 Polarization: 45.51 SS G_CDS: 1.90 Total: 47.41 kcal Atomic # 16 Polarization: -8.93 SS G_CDS: -1.05 Total: -9.98 kcal Total: -72.89 0.47 -72.42 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717862170.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.208 kcal (2) G-P(sol) polarization free energy of solvation -72.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds