Wall clock time and date at job start Wed Apr 1 2020 02:41:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46904 * 109.46972 * 2 1 4 4 C 1.46904 * 110.99948 * 163.92575 * 3 2 1 5 5 C 1.52995 * 109.47054 * 293.94916 * 4 3 2 6 6 N 1.46497 * 109.47325 * 180.02562 * 5 4 3 7 7 C 1.34773 * 120.00467 * 179.97438 * 6 5 4 8 8 O 1.21282 * 120.00089 * 0.02562 * 7 6 5 9 9 C 1.50701 * 120.00045 * 179.97438 * 7 6 5 10 10 S 1.81001 * 109.46828 * 180.02562 * 9 7 6 11 11 C 1.76205 * 99.99798 * 180.02562 * 10 9 7 12 12 H 1.07996 * 120.00376 * 0.02562 * 11 10 9 13 13 C 1.38803 * 119.99955 * 180.02562 * 11 10 9 14 14 N 1.31628 * 119.99988 * 359.97438 * 13 11 10 15 15 Si 1.86804 * 119.99919 * 180.02562 * 13 11 10 16 16 H 1.48497 * 109.47026 * 359.97438 * 15 13 11 17 17 H 1.48501 * 109.46994 * 119.99749 * 15 13 11 18 18 H 1.48504 * 109.46785 * 239.99503 * 15 13 11 19 19 C 1.46904 * 110.99848 * 287.87815 * 3 2 1 20 20 C 1.52996 * 109.47229 * 163.91950 * 19 3 2 21 21 H 1.09005 * 109.54270 * 57.18164 * 20 19 3 22 22 C 1.53177 * 109.54374 * 297.00739 * 20 19 3 23 23 C 1.53092 * 109.16558 * 183.15245 * 22 20 19 24 24 O 1.42906 * 109.41497 * 57.60676 * 23 22 20 25 25 C 1.42905 * 114.09641 * 298.84826 * 24 23 22 26 26 H 1.09003 * 109.47988 * 181.15205 * 25 24 23 27 27 C 1.53005 * 109.47695 * 301.16892 * 25 24 23 28 28 C 1.53101 * 109.49090 * 61.10750 * 25 24 23 29 29 H 1.09004 * 109.46830 * 60.34815 * 1 2 3 30 30 H 1.08999 * 109.47703 * 300.34972 * 1 2 3 31 31 H 1.09004 * 109.46904 * 180.34377 * 1 2 3 32 32 H 1.09008 * 109.46769 * 119.99099 * 2 1 3 33 33 H 1.08988 * 109.47934 * 239.99548 * 2 1 3 34 34 H 1.09000 * 109.46724 * 53.95392 * 4 3 2 35 35 H 1.09003 * 109.46783 * 173.95208 * 4 3 2 36 36 H 1.08998 * 109.47234 * 300.00415 * 5 4 3 37 37 H 1.09001 * 109.47293 * 59.99980 * 5 4 3 38 38 H 0.97004 * 119.99645 * 0.02562 * 6 5 4 39 39 H 1.08999 * 109.47072 * 300.00021 * 9 7 6 40 40 H 1.08998 * 109.47207 * 60.00744 * 9 7 6 41 41 H 0.97000 * 119.99955 * 179.97438 * 14 13 11 42 42 H 1.08998 * 109.46830 * 283.92148 * 19 3 2 43 43 H 1.08999 * 109.46788 * 43.91974 * 19 3 2 44 44 H 1.09002 * 109.51928 * 303.05680 * 22 20 19 45 45 H 1.09000 * 109.52263 * 63.24648 * 22 20 19 46 46 H 1.09000 * 109.48341 * 177.58971 * 23 22 20 47 47 H 1.08997 * 109.48028 * 297.61472 * 23 22 20 48 48 H 1.09000 * 109.46823 * 60.00316 * 27 25 24 49 49 H 1.09000 * 109.47003 * 180.02562 * 27 25 24 50 50 H 1.08999 * 109.47399 * 300.00569 * 27 25 24 51 51 H 1.09004 * 109.59960 * 182.57710 * 28 25 24 52 52 H 1.09005 * 109.45132 * 62.38681 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4376 1.4421 0.3797 5 6 3.5936 1.0010 1.8364 6 7 5.0075 1.0585 2.2153 7 6 5.3859 0.7123 3.4617 8 8 4.5558 0.3528 4.2695 9 6 6.8405 0.7710 3.8512 10 16 7.0250 0.2493 5.5745 11 6 8.7701 0.4102 5.7577 12 1 9.3714 0.7487 4.9270 13 6 9.3720 0.1019 6.9699 14 7 8.6392 -0.3102 7.9826 15 14 11.2220 0.2733 7.1643 16 1 11.8117 0.7513 5.8880 17 1 11.5180 1.2497 8.2432 18 1 11.8069 -1.0456 7.5161 19 6 1.7981 2.0217 -1.3053 20 6 1.9378 3.5386 -1.1631 21 1 2.9216 3.7780 -0.7593 22 6 0.8539 4.0667 -0.2183 23 6 0.9518 5.5926 -0.1439 24 8 0.8186 6.1417 -1.4565 25 6 1.8327 5.7202 -2.3709 26 1 1.6714 6.1971 -3.3377 27 6 3.2066 6.1189 -1.8283 28 6 1.7723 4.1993 -2.5351 29 1 -0.3633 0.5084 -0.8931 30 1 -0.3634 0.5192 0.8868 31 1 -0.3633 -1.0277 0.0062 32 1 1.8933 -0.5137 0.8901 33 1 1.8934 -0.5138 -0.8898 34 1 4.0133 0.7779 -0.2648 35 1 3.8027 2.4631 0.2682 36 1 3.0178 1.6653 2.4808 37 1 3.2284 -0.0199 1.9480 38 1 5.6714 1.3465 1.5693 39 1 7.4162 0.1063 3.2071 40 1 7.2058 1.7918 3.7392 41 1 9.0599 -0.5260 8.8296 42 1 2.5358 1.6542 -2.0186 43 1 0.7966 1.7808 -1.6616 44 1 -0.1284 3.7827 -0.5960 45 1 0.9993 3.6434 0.7756 46 1 0.1558 5.9774 0.4936 47 1 1.9190 5.8749 0.2720 48 1 3.3680 5.6416 -0.8617 49 1 3.9800 5.7978 -2.5261 50 1 3.2507 7.2016 -1.7107 51 1 2.5740 3.8708 -3.1966 52 1 0.8091 3.9181 -2.9610 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001731803128.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:41:51 Heat of formation + Delta-G solvation = -95.189311 kcal Electronic energy + Delta-G solvation = -28151.534541 eV Core-core repulsion = 24276.741383 eV Total energy + Delta-G solvation = -3874.793157 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.192 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.37105 -39.27467 -38.23253 -34.89681 -34.13066 -32.51548 -32.43501 -31.35712 -30.03290 -28.92459 -27.69974 -25.73473 -25.42592 -23.73581 -23.17066 -22.53219 -20.77081 -20.27004 -19.54240 -17.85154 -16.92015 -16.60050 -16.36323 -16.21630 -15.73146 -15.53186 -15.20103 -15.03711 -14.81294 -14.80121 -14.57590 -14.17296 -13.95082 -13.57619 -13.49773 -13.11925 -12.87448 -12.80710 -12.57142 -12.42512 -12.30290 -12.18465 -12.05331 -11.94578 -11.68714 -11.58464 -11.56042 -11.07909 -11.02606 -11.00447 -10.99082 -10.79933 -10.76235 -10.31908 -9.81356 -9.74528 -9.42285 -9.08431 -8.87593 -8.68956 -8.23625 -6.50534 -6.22397 -3.92853 2.93668 3.10018 3.20931 3.24569 3.30082 3.47006 3.55348 3.86954 4.19632 4.28616 4.36628 4.44708 4.55014 4.63661 4.77114 4.77669 4.81508 4.94003 4.98576 5.02451 5.07216 5.12825 5.14435 5.17144 5.19031 5.20306 5.26716 5.32603 5.40081 5.44430 5.54248 5.57819 5.61022 5.62428 5.67592 5.76046 5.78123 5.81545 5.89256 5.90226 5.96212 5.98193 6.07404 6.12867 6.55595 6.70919 6.74350 6.93098 7.59205 7.68984 8.34775 8.61054 9.23027 10.85083 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.014601 B = 0.001920 C = 0.001779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1917.204237 B =14579.638623 C =15738.805660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.043 3.957 3 N -0.531 5.531 4 C 0.044 3.956 5 C 0.124 3.876 6 N -0.740 5.740 7 C 0.532 3.468 8 O -0.516 6.516 9 C -0.153 4.153 10 S -0.061 6.061 11 C -0.535 4.535 12 H 0.073 0.927 13 C 0.073 3.927 14 N -0.867 5.867 15 Si 0.919 3.081 16 H -0.272 1.272 17 H -0.280 1.280 18 H -0.280 1.280 19 C 0.060 3.940 20 C -0.086 4.086 21 H 0.074 0.926 22 C -0.138 4.138 23 C 0.053 3.947 24 O -0.380 6.380 25 C 0.088 3.912 26 H 0.099 0.901 27 C -0.188 4.188 28 C -0.144 4.144 29 H 0.052 0.948 30 H 0.065 0.935 31 H 0.058 0.942 32 H 0.082 0.918 33 H 0.033 0.967 34 H 0.039 0.961 35 H 0.081 0.919 36 H 0.074 0.926 37 H 0.065 0.935 38 H 0.396 0.604 39 H 0.089 0.911 40 H 0.089 0.911 41 H 0.268 0.732 42 H 0.035 0.965 43 H 0.078 0.922 44 H 0.066 0.934 45 H 0.086 0.914 46 H 0.091 0.909 47 H 0.052 0.948 48 H 0.065 0.935 49 H 0.065 0.935 50 H 0.062 0.938 51 H 0.070 0.930 52 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.317 8.557 -25.186 30.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.084 4.084 3 N -0.255 5.255 4 C -0.085 4.085 5 C 0.000 4.000 6 N -0.395 5.395 7 C 0.318 3.682 8 O -0.390 6.390 9 C -0.304 4.304 10 S 0.166 5.834 11 C -0.683 4.683 12 H 0.091 0.909 13 C -0.137 4.137 14 N -0.503 5.503 15 Si 0.745 3.255 16 H -0.196 1.196 17 H -0.205 1.205 18 H -0.206 1.206 19 C -0.067 4.067 20 C -0.105 4.105 21 H 0.093 0.907 22 C -0.176 4.176 23 C -0.023 4.023 24 O -0.299 6.299 25 C 0.030 3.970 26 H 0.117 0.883 27 C -0.245 4.245 28 C -0.183 4.183 29 H 0.071 0.929 30 H 0.084 0.916 31 H 0.077 0.923 32 H 0.100 0.900 33 H 0.052 0.948 34 H 0.057 0.943 35 H 0.099 0.901 36 H 0.092 0.908 37 H 0.084 0.916 38 H 0.230 0.770 39 H 0.107 0.893 40 H 0.108 0.892 41 H 0.078 0.922 42 H 0.053 0.947 43 H 0.097 0.903 44 H 0.085 0.915 45 H 0.105 0.895 46 H 0.110 0.890 47 H 0.071 0.929 48 H 0.083 0.917 49 H 0.084 0.916 50 H 0.081 0.919 51 H 0.089 0.911 52 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -17.147 8.264 -23.338 30.116 hybrid contribution 3.220 -0.045 -1.689 3.636 sum -13.927 8.219 -25.027 29.797 Atomic orbital electron populations 1.21774 0.94661 1.01537 1.02420 1.22212 0.96394 0.88506 1.01324 1.61865 1.16887 1.17528 1.29259 1.22280 0.88899 1.01736 0.95565 1.21210 0.82531 1.01945 0.94321 1.45926 1.08564 1.71013 1.13997 1.20285 0.90782 0.76122 0.80990 1.90709 1.53523 1.44943 1.49805 1.23526 0.94381 1.05243 1.07212 1.85415 1.09653 1.86654 1.01672 1.22905 0.92227 1.52237 1.00924 0.90893 1.25002 0.99260 0.94561 0.94831 1.70028 1.35653 1.42044 1.02530 0.86113 0.83084 0.77989 0.78281 1.19637 1.20549 1.20572 1.22188 1.01413 0.93883 0.89263 1.21233 0.99934 0.94005 0.95304 0.90733 1.22093 0.98902 0.95259 1.01344 1.22660 1.01800 0.93435 0.84422 1.87982 1.50437 1.70302 1.21167 1.22117 0.87808 0.93741 0.93334 0.88318 1.22473 0.97358 1.02341 1.02367 1.22216 1.02760 0.95856 0.97432 0.92943 0.91624 0.92321 0.90005 0.94824 0.94265 0.90059 0.90776 0.91648 0.77022 0.89278 0.89231 0.92230 0.94698 0.90325 0.91530 0.89517 0.89045 0.92944 0.91655 0.91573 0.91865 0.91091 0.91066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 9.97 37.16 0.37 -0.66 16 2 C 0.04 0.34 5.56 -3.82 -0.02 0.32 16 3 N -0.53 -4.15 3.85 -234.63 -0.90 -5.05 16 4 C 0.04 0.36 4.92 -3.82 -0.02 0.34 16 5 C 0.12 1.43 5.64 -4.05 -0.02 1.41 16 6 N -0.74 -9.65 5.56 -60.30 -0.33 -9.98 16 7 C 0.53 9.88 7.85 -10.99 -0.09 9.79 16 8 O -0.52 -11.77 15.86 5.56 0.09 -11.68 16 9 C -0.15 -3.06 6.16 36.01 0.22 -2.84 16 10 S -0.06 -1.64 20.57 -107.50 -2.21 -3.86 16 11 C -0.53 -15.21 9.50 30.94 0.29 -14.91 16 12 H 0.07 1.97 7.80 -52.49 -0.41 1.56 16 13 C 0.07 2.07 5.49 -17.43 -0.10 1.98 16 14 N -0.87 -26.16 13.22 55.49 0.73 -25.42 16 15 Si 0.92 21.37 29.55 -169.99 -5.02 16.34 16 16 H -0.27 -6.12 7.11 56.52 0.40 -5.71 16 17 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 18 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 19 C 0.06 0.40 4.23 -3.82 -0.02 0.38 16 20 C -0.09 -0.56 1.96 -90.44 -0.18 -0.74 16 21 H 0.07 0.52 5.01 -51.93 -0.26 0.26 16 22 C -0.14 -1.02 5.25 -26.59 -0.14 -1.16 16 23 C 0.05 0.41 6.52 37.21 0.24 0.66 16 24 O -0.38 -3.43 10.60 -35.23 -0.37 -3.80 16 25 C 0.09 0.59 3.91 -26.68 -0.10 0.49 16 26 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 27 C -0.19 -1.17 8.65 37.16 0.32 -0.85 16 28 C -0.14 -0.85 4.93 -26.59 -0.13 -0.99 16 29 H 0.05 0.34 6.57 -51.93 -0.34 0.00 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 31 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.08 0.73 5.94 -51.92 -0.31 0.42 16 33 H 0.03 0.25 8.05 -51.94 -0.42 -0.17 16 34 H 0.04 0.31 8.12 -51.93 -0.42 -0.11 16 35 H 0.08 0.62 6.37 -51.93 -0.33 0.29 16 36 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.07 0.83 6.28 -51.93 -0.33 0.50 16 38 H 0.40 3.94 8.47 -40.82 -0.35 3.59 16 39 H 0.09 1.64 8.14 -51.92 -0.42 1.22 16 40 H 0.09 1.65 8.14 -51.92 -0.42 1.23 16 41 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 42 H 0.03 0.23 8.05 -51.93 -0.42 -0.19 16 43 H 0.08 0.51 6.30 -51.93 -0.33 0.19 16 44 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 45 H 0.09 0.72 7.80 -51.93 -0.40 0.31 16 46 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 47 H 0.05 0.40 6.34 -51.93 -0.33 0.07 16 48 H 0.06 0.44 4.98 -51.93 -0.26 0.18 16 49 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 50 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 51 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 52 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 LS Contribution 413.17 15.07 6.23 6.23 Total: -1.00 -34.01 413.17 -10.27 -44.28 By element: Atomic # 1 Polarization: 8.81 SS G_CDS: -9.11 Total: -0.30 kcal Atomic # 6 Polarization: -7.41 SS G_CDS: 0.64 Total: -6.77 kcal Atomic # 7 Polarization: -39.95 SS G_CDS: -0.50 Total: -40.45 kcal Atomic # 8 Polarization: -15.19 SS G_CDS: -0.29 Total: -15.48 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.34 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -34.01 -10.27 -44.28 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731803128.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.906 kcal (2) G-P(sol) polarization free energy of solvation -34.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds