Wall clock time and date at job start Wed Apr 1 2020 02:41:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46904 * 109.46972 * 2 1 4 4 C 1.46904 * 110.99948 * 163.92575 * 3 2 1 5 5 C 1.52995 * 109.47054 * 293.94916 * 4 3 2 6 6 N 1.46497 * 109.47325 * 180.02562 * 5 4 3 7 7 C 1.34773 * 120.00467 * 179.97438 * 6 5 4 8 8 O 1.21282 * 120.00089 * 0.02562 * 7 6 5 9 9 C 1.50701 * 120.00045 * 179.97438 * 7 6 5 10 10 S 1.81001 * 109.46828 * 180.02562 * 9 7 6 11 11 C 1.76205 * 99.99798 * 180.02562 * 10 9 7 12 12 H 1.07996 * 120.00376 * 0.02562 * 11 10 9 13 13 C 1.38803 * 119.99955 * 180.02562 * 11 10 9 14 14 N 1.31628 * 119.99988 * 359.97438 * 13 11 10 15 15 Si 1.86804 * 119.99919 * 180.02562 * 13 11 10 16 16 H 1.48497 * 109.47026 * 359.97438 * 15 13 11 17 17 H 1.48501 * 109.46994 * 119.99749 * 15 13 11 18 18 H 1.48504 * 109.46785 * 239.99503 * 15 13 11 19 19 C 1.46904 * 110.99848 * 287.87815 * 3 2 1 20 20 C 1.52996 * 109.47229 * 163.91950 * 19 3 2 21 21 H 1.09005 * 109.54270 * 57.18164 * 20 19 3 22 22 C 1.53177 * 109.54374 * 297.00739 * 20 19 3 23 23 C 1.53092 * 109.16558 * 183.15245 * 22 20 19 24 24 O 1.42906 * 109.41497 * 57.60676 * 23 22 20 25 25 C 1.42905 * 114.09641 * 298.84826 * 24 23 22 26 26 H 1.09003 * 109.47988 * 181.15205 * 25 24 23 27 27 C 1.53005 * 109.47695 * 301.16892 * 25 24 23 28 28 C 1.53101 * 109.49090 * 61.10750 * 25 24 23 29 29 H 1.09004 * 109.46830 * 60.34815 * 1 2 3 30 30 H 1.08999 * 109.47703 * 300.34972 * 1 2 3 31 31 H 1.09004 * 109.46904 * 180.34377 * 1 2 3 32 32 H 1.09008 * 109.46769 * 119.99099 * 2 1 3 33 33 H 1.08988 * 109.47934 * 239.99548 * 2 1 3 34 34 H 1.09000 * 109.46724 * 53.95392 * 4 3 2 35 35 H 1.09003 * 109.46783 * 173.95208 * 4 3 2 36 36 H 1.08998 * 109.47234 * 300.00415 * 5 4 3 37 37 H 1.09001 * 109.47293 * 59.99980 * 5 4 3 38 38 H 0.97004 * 119.99645 * 0.02562 * 6 5 4 39 39 H 1.08999 * 109.47072 * 300.00021 * 9 7 6 40 40 H 1.08998 * 109.47207 * 60.00744 * 9 7 6 41 41 H 0.97000 * 119.99955 * 179.97438 * 14 13 11 42 42 H 1.08998 * 109.46830 * 283.92148 * 19 3 2 43 43 H 1.08999 * 109.46788 * 43.91974 * 19 3 2 44 44 H 1.09002 * 109.51928 * 303.05680 * 22 20 19 45 45 H 1.09000 * 109.52263 * 63.24648 * 22 20 19 46 46 H 1.09000 * 109.48341 * 177.58971 * 23 22 20 47 47 H 1.08997 * 109.48028 * 297.61472 * 23 22 20 48 48 H 1.09000 * 109.46823 * 60.00316 * 27 25 24 49 49 H 1.09000 * 109.47003 * 180.02562 * 27 25 24 50 50 H 1.08999 * 109.47399 * 300.00569 * 27 25 24 51 51 H 1.09004 * 109.59960 * 182.57710 * 28 25 24 52 52 H 1.09005 * 109.45132 * 62.38681 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4376 1.4421 0.3797 5 6 3.5936 1.0010 1.8364 6 7 5.0075 1.0585 2.2153 7 6 5.3859 0.7123 3.4617 8 8 4.5558 0.3528 4.2695 9 6 6.8405 0.7710 3.8512 10 16 7.0250 0.2493 5.5745 11 6 8.7701 0.4102 5.7577 12 1 9.3714 0.7487 4.9270 13 6 9.3720 0.1019 6.9699 14 7 8.6392 -0.3102 7.9826 15 14 11.2220 0.2733 7.1643 16 1 11.8117 0.7513 5.8880 17 1 11.5180 1.2497 8.2432 18 1 11.8069 -1.0456 7.5161 19 6 1.7981 2.0217 -1.3053 20 6 1.9378 3.5386 -1.1631 21 1 2.9216 3.7780 -0.7593 22 6 0.8539 4.0667 -0.2183 23 6 0.9518 5.5926 -0.1439 24 8 0.8186 6.1417 -1.4565 25 6 1.8327 5.7202 -2.3709 26 1 1.6714 6.1971 -3.3377 27 6 3.2066 6.1189 -1.8283 28 6 1.7723 4.1993 -2.5351 29 1 -0.3633 0.5084 -0.8931 30 1 -0.3634 0.5192 0.8868 31 1 -0.3633 -1.0277 0.0062 32 1 1.8933 -0.5137 0.8901 33 1 1.8934 -0.5138 -0.8898 34 1 4.0133 0.7779 -0.2648 35 1 3.8027 2.4631 0.2682 36 1 3.0178 1.6653 2.4808 37 1 3.2284 -0.0199 1.9480 38 1 5.6714 1.3465 1.5693 39 1 7.4162 0.1063 3.2071 40 1 7.2058 1.7918 3.7392 41 1 9.0599 -0.5260 8.8296 42 1 2.5358 1.6542 -2.0186 43 1 0.7966 1.7808 -1.6616 44 1 -0.1284 3.7827 -0.5960 45 1 0.9993 3.6434 0.7756 46 1 0.1558 5.9774 0.4936 47 1 1.9190 5.8749 0.2720 48 1 3.3680 5.6416 -0.8617 49 1 3.9800 5.7978 -2.5261 50 1 3.2507 7.2016 -1.7107 51 1 2.5740 3.8708 -3.1966 52 1 0.8091 3.9181 -2.9610 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001731803128.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:41:51 Heat of formation + Delta-G solvation = -118.585161 kcal Electronic energy + Delta-G solvation = -28152.549061 eV Core-core repulsion = 24276.741383 eV Total energy + Delta-G solvation = -3875.807678 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.192 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.98132 -40.58377 -38.99710 -35.97415 -34.86850 -34.58269 -33.04928 -32.28447 -31.09278 -29.76516 -28.52430 -27.64557 -26.30447 -24.30634 -23.96034 -23.14626 -21.87435 -21.21562 -20.11692 -19.80151 -17.87632 -17.54485 -17.39966 -16.89555 -16.87682 -16.83368 -16.31869 -16.20494 -15.87274 -15.60508 -15.40988 -15.22201 -15.03110 -14.70689 -14.45832 -14.18965 -13.99998 -13.73261 -13.39824 -13.32292 -13.15900 -12.99942 -12.92003 -12.85015 -12.75558 -12.59561 -12.58431 -12.40753 -12.31806 -12.07864 -11.71954 -11.66434 -11.56551 -11.35776 -11.15849 -10.99365 -10.85744 -10.32735 -10.26873 -10.11198 -9.28585 -8.66761 -8.34713 -6.12742 1.26737 1.41640 1.47037 1.58089 1.61025 2.17576 2.27569 2.95098 2.99543 3.02475 3.33523 3.72678 3.78776 3.88636 3.90720 4.00071 4.05777 4.11776 4.17405 4.25443 4.30649 4.35996 4.44034 4.44838 4.50118 4.51129 4.55510 4.64683 4.67365 4.67928 4.73644 4.86308 4.89962 4.92714 4.95065 5.03700 5.06027 5.10797 5.12198 5.23857 5.29890 5.35644 5.40020 5.41390 5.42484 5.52458 6.07662 6.12328 6.20245 6.36976 6.49803 7.06725 7.24232 8.74759 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.014601 B = 0.001920 C = 0.001779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1917.204237 B =14579.638623 C =15738.805660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.043 3.957 3 N -0.539 5.539 4 C 0.055 3.945 5 C 0.127 3.873 6 N -0.712 5.712 7 C 0.534 3.466 8 O -0.566 6.566 9 C -0.128 4.128 10 S -0.154 6.154 11 C -0.544 4.544 12 H 0.084 0.916 13 C 0.011 3.989 14 N -0.912 5.912 15 Si 1.000 3.000 16 H -0.256 1.256 17 H -0.274 1.274 18 H -0.274 1.274 19 C 0.065 3.935 20 C -0.082 4.082 21 H 0.074 0.926 22 C -0.132 4.132 23 C 0.052 3.948 24 O -0.400 6.400 25 C 0.081 3.919 26 H 0.107 0.893 27 C -0.185 4.185 28 C -0.138 4.138 29 H 0.060 0.940 30 H 0.052 0.948 31 H 0.064 0.936 32 H 0.067 0.933 33 H 0.042 0.958 34 H 0.052 0.948 35 H 0.093 0.907 36 H 0.057 0.943 37 H 0.055 0.945 38 H 0.416 0.584 39 H 0.111 0.889 40 H 0.111 0.889 41 H 0.271 0.729 42 H 0.044 0.956 43 H 0.081 0.919 44 H 0.061 0.939 45 H 0.075 0.925 46 H 0.091 0.909 47 H 0.052 0.948 48 H 0.059 0.941 49 H 0.079 0.921 50 H 0.056 0.944 51 H 0.086 0.914 52 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.861 9.185 -28.015 32.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.084 4.084 3 N -0.264 5.264 4 C -0.073 4.073 5 C 0.003 3.997 6 N -0.366 5.366 7 C 0.319 3.681 8 O -0.444 6.444 9 C -0.280 4.280 10 S 0.073 5.927 11 C -0.692 4.692 12 H 0.102 0.898 13 C -0.193 4.193 14 N -0.548 5.548 15 Si 0.821 3.179 16 H -0.180 1.180 17 H -0.200 1.200 18 H -0.200 1.200 19 C -0.062 4.062 20 C -0.100 4.100 21 H 0.092 0.908 22 C -0.170 4.170 23 C -0.024 4.024 24 O -0.320 6.320 25 C 0.024 3.976 26 H 0.125 0.875 27 C -0.242 4.242 28 C -0.176 4.176 29 H 0.079 0.921 30 H 0.071 0.929 31 H 0.083 0.917 32 H 0.085 0.915 33 H 0.060 0.940 34 H 0.070 0.930 35 H 0.112 0.888 36 H 0.075 0.925 37 H 0.073 0.927 38 H 0.253 0.747 39 H 0.129 0.871 40 H 0.129 0.871 41 H 0.080 0.920 42 H 0.063 0.937 43 H 0.099 0.901 44 H 0.080 0.920 45 H 0.094 0.906 46 H 0.110 0.890 47 H 0.070 0.930 48 H 0.078 0.922 49 H 0.098 0.902 50 H 0.075 0.925 51 H 0.105 0.895 52 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -15.691 8.914 -26.240 31.846 hybrid contribution 2.655 -0.201 -0.919 2.817 sum -13.036 8.713 -27.159 31.360 Atomic orbital electron populations 1.21733 0.94187 1.01874 1.02184 1.22194 0.96799 0.88475 1.00949 1.61830 1.16550 1.17660 1.30333 1.22148 0.89555 1.02548 0.93044 1.21259 0.80895 1.01138 0.96386 1.45621 1.09940 1.68714 1.12349 1.20065 0.89716 0.76097 0.82176 1.90700 1.54397 1.47636 1.51696 1.23362 0.96055 1.06558 1.01977 1.85617 1.10691 1.87682 1.08704 1.23231 0.92210 1.52170 1.01562 0.89836 1.26150 1.04971 0.93863 0.94333 1.70192 1.38139 1.43245 1.03244 0.84892 0.75978 0.78146 0.78838 1.17951 1.19972 1.19976 1.22174 1.01863 0.93620 0.88586 1.21197 0.99381 0.93995 0.95475 0.90800 1.22000 0.99072 0.94926 1.00971 1.22678 1.01834 0.93681 0.84230 1.87954 1.51472 1.70823 1.21726 1.22300 0.87573 0.94487 0.93279 0.87497 1.22442 0.97452 1.01908 1.02394 1.22167 1.03280 0.95045 0.97146 0.92131 0.92852 0.91735 0.91491 0.93995 0.92993 0.88839 0.92451 0.92694 0.74650 0.87108 0.87084 0.92014 0.93745 0.90064 0.92024 0.90638 0.89039 0.92958 0.92213 0.90205 0.92485 0.89550 0.91224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.86 9.97 71.98 0.72 -1.14 16 2 C 0.04 0.62 5.56 86.30 0.48 1.10 16 3 N -0.54 -7.49 3.85 -896.22 -3.45 -10.94 16 4 C 0.06 0.78 4.92 86.30 0.42 1.21 16 5 C 0.13 2.80 5.64 86.38 0.49 3.29 16 6 N -0.71 -17.23 5.56 -463.08 -2.57 -19.80 16 7 C 0.53 19.48 7.85 87.66 0.69 20.17 16 8 O -0.57 -26.42 15.86 -3.03 -0.05 -26.46 16 9 C -0.13 -4.99 6.16 71.24 0.44 -4.55 16 10 S -0.15 -8.55 20.57 -56.49 -1.16 -9.71 16 11 C -0.54 -30.90 9.50 67.96 0.65 -30.26 16 12 H 0.08 4.39 7.80 -2.91 -0.02 4.37 16 13 C 0.01 0.65 5.49 84.86 0.47 1.12 16 14 N -0.91 -56.05 13.22 21.65 0.29 -55.77 16 15 Si 1.00 43.42 29.55 68.60 2.03 45.45 16 16 H -0.26 -10.33 7.11 99.48 0.71 -9.63 16 17 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 18 H -0.27 -11.57 7.11 99.48 0.71 -10.87 16 19 C 0.06 0.70 4.23 86.30 0.37 1.07 16 20 C -0.08 -0.90 1.96 -10.68 -0.02 -0.92 16 21 H 0.07 0.85 5.01 -2.38 -0.01 0.84 16 22 C -0.13 -1.83 5.25 30.68 0.16 -1.66 16 23 C 0.05 0.78 6.52 72.01 0.47 1.25 16 24 O -0.40 -6.89 10.60 -148.98 -1.58 -8.46 16 25 C 0.08 0.96 3.91 30.63 0.12 1.08 16 26 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 27 C -0.18 -1.98 8.65 71.98 0.62 -1.36 16 28 C -0.14 -1.31 4.93 30.69 0.15 -1.16 16 29 H 0.06 0.69 6.57 -2.38 -0.02 0.67 16 30 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.06 0.76 8.14 -2.38 -0.02 0.74 16 32 H 0.07 1.17 5.94 -2.38 -0.01 1.15 16 33 H 0.04 0.54 8.05 -2.39 -0.02 0.52 16 34 H 0.05 0.64 8.12 -2.39 -0.02 0.62 16 35 H 0.09 1.14 6.37 -2.39 -0.02 1.12 16 36 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 37 H 0.05 1.37 6.28 -2.39 -0.01 1.36 16 38 H 0.42 6.90 8.47 -92.71 -0.79 6.11 16 39 H 0.11 3.84 8.14 -2.40 -0.02 3.82 16 40 H 0.11 3.85 8.14 -2.40 -0.02 3.83 16 41 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 42 H 0.04 0.43 8.05 -2.39 -0.02 0.41 16 43 H 0.08 0.87 6.30 -2.39 -0.02 0.85 16 44 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 45 H 0.07 1.22 7.80 -2.39 -0.02 1.20 16 46 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 47 H 0.05 0.77 6.34 -2.39 -0.02 0.75 16 48 H 0.06 0.70 4.98 -2.39 -0.01 0.69 16 49 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 50 H 0.06 0.67 8.14 -2.39 -0.02 0.66 16 51 H 0.09 0.58 8.14 -2.38 -0.02 0.56 16 52 H 0.07 0.71 8.14 -2.38 -0.02 0.69 16 Total: -1.00 -75.94 413.17 -0.17 -76.11 By element: Atomic # 1 Polarization: 20.25 SS G_CDS: 0.12 Total: 20.36 kcal Atomic # 6 Polarization: -16.99 SS G_CDS: 6.22 Total: -10.77 kcal Atomic # 7 Polarization: -80.77 SS G_CDS: -5.74 Total: -86.51 kcal Atomic # 8 Polarization: -33.30 SS G_CDS: -1.63 Total: -34.93 kcal Atomic # 14 Polarization: 43.42 SS G_CDS: 2.03 Total: 45.45 kcal Atomic # 16 Polarization: -8.55 SS G_CDS: -1.16 Total: -9.71 kcal Total: -75.94 -0.17 -76.11 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731803128.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.477 kcal (2) G-P(sol) polarization free energy of solvation -75.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.108 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds