Wall clock time and date at job start Wed Apr 1 2020 03:05:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 O 1.20761 * 120.00285 * 2 1 4 4 C 1.50698 * 119.99472 * 179.97438 * 2 1 3 5 5 C 1.53005 * 109.46904 * 179.97438 * 4 2 1 6 6 C 1.52999 * 109.47416 * 180.02562 * 5 4 2 7 7 C 1.50690 * 109.47228 * 180.02562 * 6 5 4 8 8 O 1.21288 * 120.00242 * 359.97438 * 7 6 5 9 9 N 1.34774 * 120.00160 * 180.02562 * 7 6 5 10 10 C 1.46501 * 120.00589 * 179.97438 * 9 7 6 11 11 C 1.52999 * 109.47657 * 179.97438 * 10 9 7 12 12 H 1.08996 * 109.76235 * 65.73578 * 11 10 9 13 13 C 1.52782 * 109.77156 * 186.53542 * 11 10 9 14 14 C 1.50598 * 110.85604 * 167.07324 * 13 11 10 15 15 C 1.38981 * 117.61872 * 160.53308 * 14 13 11 16 16 C 1.37905 * 120.57929 * 178.80218 * 15 14 13 17 17 C 1.38269 * 119.82975 * 0.02562 * 16 15 14 18 18 C 1.37956 * 119.71686 * 0.26171 * 17 16 15 19 19 C 1.37678 * 122.85906 * 339.80166 * 14 13 11 20 20 C 1.50803 * 122.34785 * 1.52314 * 19 14 13 21 21 N 1.46684 * 109.67435 * 348.40461 * 20 19 14 22 22 C 1.36941 * 121.32894 * 224.43092 * 21 20 19 23 23 H 1.08007 * 119.99363 * 151.86401 * 22 21 20 24 24 C 1.38810 * 120.00433 * 331.85786 * 22 21 20 25 25 N 1.31622 * 119.99807 * 349.10176 * 24 22 21 26 26 Si 1.86793 * 120.00368 * 169.10056 * 24 22 21 27 27 H 1.48499 * 109.47421 * 89.99901 * 26 24 22 28 28 H 1.48496 * 109.47265 * 210.00218 * 26 24 22 29 29 H 1.48507 * 109.46977 * 330.00190 * 26 24 22 30 30 H 1.09005 * 109.46776 * 270.00488 * 1 2 3 31 31 H 1.09001 * 109.47004 * 29.99997 * 1 2 3 32 32 H 1.08995 * 109.47243 * 150.00233 * 1 2 3 33 33 H 1.08995 * 109.47434 * 299.99737 * 4 2 1 34 34 H 1.08998 * 109.47339 * 60.00446 * 4 2 1 35 35 H 1.09002 * 109.47306 * 300.00844 * 5 4 2 36 36 H 1.09001 * 109.46989 * 60.00037 * 5 4 2 37 37 H 1.09008 * 109.46889 * 300.00189 * 6 5 4 38 38 H 1.08996 * 109.46687 * 59.99940 * 6 5 4 39 39 H 0.97002 * 120.00119 * 359.97438 * 9 7 6 40 40 H 1.09002 * 109.47035 * 300.00652 * 10 9 7 41 41 H 1.09001 * 109.47020 * 59.99697 * 10 9 7 42 42 H 1.08999 * 109.19811 * 287.42025 * 13 11 10 43 43 H 1.08995 * 109.20280 * 46.71196 * 13 11 10 44 44 H 1.08001 * 119.71015 * 358.76265 * 15 14 13 45 45 H 1.08006 * 120.08605 * 180.02562 * 16 15 14 46 46 H 1.08003 * 120.13992 * 180.29109 * 17 16 15 47 47 H 1.07997 * 119.74751 * 179.97438 * 18 17 16 48 48 H 1.08992 * 109.44420 * 228.34187 * 20 19 14 49 49 H 1.08996 * 109.43632 * 108.46014 * 20 19 14 50 50 H 0.96989 * 120.00012 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1109 1.0458 0.0000 4 6 2.2604 -1.3052 0.0006 5 6 3.7648 -1.0256 -0.0002 6 6 4.5297 -2.3507 -0.0002 7 6 6.0113 -2.0753 -0.0004 8 8 6.4156 -0.9318 -0.0009 9 7 6.8871 -3.0997 -0.0009 10 6 8.3275 -2.8322 -0.0016 11 6 9.0924 -4.1572 -0.0016 12 1 8.9113 -4.6874 -0.9365 13 6 10.5880 -3.8905 0.1614 14 6 11.3280 -5.1631 0.4788 15 6 12.6992 -5.1845 0.2530 16 6 13.4409 -6.3097 0.5454 17 6 12.8174 -7.4279 1.0675 18 6 11.4556 -7.4116 1.2872 19 6 10.7072 -6.2807 0.9897 20 6 9.2216 -6.3335 1.2433 21 7 8.6537 -4.9855 1.1338 22 6 7.7519 -4.5161 2.0512 23 1 7.6842 -3.4563 2.2485 24 6 6.9246 -5.4021 2.7275 25 7 6.8505 -6.6583 2.3417 26 14 5.9167 -4.8118 4.1852 27 1 4.5953 -4.3285 3.7102 28 1 5.7201 -5.9337 5.1380 29 1 6.6334 -3.7037 4.8663 30 1 -0.3633 0.0001 1.0277 31 1 -0.3633 0.8900 -0.5138 32 1 -0.3633 -0.8900 -0.5138 33 1 1.9972 -1.8763 0.8908 34 1 1.9972 -1.8771 -0.8892 35 1 4.0278 -0.4545 -0.8906 36 1 4.0284 -0.4535 0.8893 37 1 4.2668 -2.9220 0.8901 38 1 4.2659 -2.9224 -0.8900 39 1 6.5638 -4.0143 -0.0009 40 1 8.5904 -2.2604 -0.8916 41 1 8.5913 -2.2607 0.8883 42 1 10.9799 -3.4694 -0.7644 43 1 10.7387 -3.1766 0.9710 44 1 13.1880 -4.3125 -0.1558 45 1 14.5061 -6.3175 0.3671 46 1 13.3942 -8.3102 1.3028 47 1 10.9680 -8.2849 1.6946 48 1 9.0380 -6.7241 2.2441 49 1 8.7510 -6.9860 0.5079 50 1 6.2722 -7.2774 2.8140 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733809114.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:05:36 Heat of formation + Delta-G solvation = -42.482752 kcal Electronic energy + Delta-G solvation = -30127.059562 eV Core-core repulsion = 26119.107981 eV Total energy + Delta-G solvation = -4007.951581 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -39.68107 -39.43552 -38.85102 -36.61165 -34.17718 -33.63501 -32.91437 -31.44643 -30.90440 -30.25591 -29.04678 -27.88817 -25.65319 -25.23806 -22.88690 -22.29955 -21.56224 -20.93773 -19.72998 -19.54583 -19.01132 -16.95058 -16.28457 -16.07724 -16.02372 -15.77584 -15.41319 -15.05398 -14.86193 -14.78176 -14.57119 -14.25168 -14.13524 -13.62004 -13.45410 -13.02948 -12.82747 -12.69114 -12.59908 -12.48306 -12.43008 -12.17863 -11.89002 -11.77220 -11.55948 -11.53753 -11.29327 -11.10398 -10.93647 -10.87220 -10.72502 -10.61747 -10.54205 -10.22000 -10.03603 -9.75708 -9.73248 -9.19368 -8.80805 -8.27830 -8.20833 -7.87094 -6.84601 -5.95664 -3.39589 1.85239 1.87973 1.92817 3.23100 3.28603 3.34474 3.39088 3.75482 4.08523 4.27371 4.34023 4.79245 4.95633 4.99950 5.12898 5.18258 5.19830 5.20712 5.26902 5.33888 5.35132 5.45624 5.54767 5.56403 5.61618 5.64053 5.71574 5.84689 5.86640 5.93323 5.95590 6.04738 6.09319 6.18276 6.26604 6.30573 6.37357 6.48474 6.54063 6.61264 6.80864 6.92975 6.94159 7.11738 7.15861 7.20718 7.43332 7.48241 7.61688 7.69479 8.22310 8.31926 8.93074 9.04041 9.63503 10.22242 11.13405 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.015319 B = 0.002702 C = 0.002397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1827.311695 B =10361.337782 C =11678.327136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.351 3.649 3 O -0.456 6.456 4 C -0.175 4.175 5 C -0.094 4.094 6 C -0.141 4.141 7 C 0.507 3.493 8 O -0.565 6.565 9 N -0.695 5.695 10 C 0.136 3.864 11 C 0.158 3.842 12 H 0.042 0.958 13 C -0.091 4.091 14 C -0.068 4.068 15 C -0.128 4.128 16 C -0.140 4.140 17 C -0.130 4.130 18 C -0.123 4.123 19 C -0.078 4.078 20 C 0.208 3.792 21 N -0.589 5.589 22 C -0.243 4.243 23 H 0.072 0.928 24 C 0.007 3.993 25 N -0.906 5.906 26 Si 0.897 3.103 27 H -0.286 1.286 28 H -0.290 1.290 29 H -0.280 1.280 30 H 0.094 0.906 31 H 0.081 0.919 32 H 0.084 0.916 33 H 0.100 0.900 34 H 0.098 0.902 35 H 0.072 0.928 36 H 0.073 0.927 37 H 0.095 0.905 38 H 0.088 0.912 39 H 0.416 0.584 40 H 0.056 0.944 41 H 0.065 0.935 42 H 0.063 0.937 43 H 0.074 0.926 44 H 0.111 0.889 45 H 0.111 0.889 46 H 0.112 0.888 47 H 0.117 0.883 48 H 0.096 0.904 49 H 0.042 0.958 50 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.361 1.494 -6.103 7.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.262 4.262 2 C 0.226 3.774 3 O -0.329 6.329 4 C -0.212 4.212 5 C -0.132 4.132 6 C -0.181 4.181 7 C 0.293 3.707 8 O -0.445 6.445 9 N -0.346 5.346 10 C 0.012 3.988 11 C 0.051 3.949 12 H 0.059 0.941 13 C -0.130 4.130 14 C -0.068 4.068 15 C -0.146 4.146 16 C -0.158 4.158 17 C -0.149 4.149 18 C -0.142 4.142 19 C -0.079 4.079 20 C 0.083 3.917 21 N -0.312 5.312 22 C -0.373 4.373 23 H 0.089 0.911 24 C -0.191 4.191 25 N -0.550 5.550 26 Si 0.727 3.273 27 H -0.212 1.212 28 H -0.216 1.216 29 H -0.205 1.205 30 H 0.112 0.888 31 H 0.100 0.900 32 H 0.103 0.897 33 H 0.118 0.882 34 H 0.117 0.883 35 H 0.091 0.909 36 H 0.092 0.908 37 H 0.113 0.887 38 H 0.107 0.893 39 H 0.253 0.747 40 H 0.074 0.926 41 H 0.083 0.917 42 H 0.081 0.919 43 H 0.092 0.908 44 H 0.129 0.871 45 H 0.129 0.871 46 H 0.130 0.870 47 H 0.135 0.865 48 H 0.114 0.886 49 H 0.060 0.940 50 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -2.875 2.720 -6.013 7.199 hybrid contribution -0.573 -0.566 0.981 1.269 sum -3.448 2.154 -5.032 6.469 Atomic orbital electron populations 1.22309 0.94807 1.04563 1.04555 1.24679 0.91793 0.90565 0.70342 1.90438 1.71964 1.35231 1.35270 1.22209 0.97001 0.97271 1.04744 1.21119 0.91246 0.96344 1.04482 1.21637 0.92656 0.99354 1.04459 1.20487 0.88612 0.85153 0.76461 1.90651 1.80570 1.21691 1.51606 1.45942 1.05985 1.10185 1.72440 1.21214 0.80352 0.96501 1.00765 1.20712 0.91153 0.91170 0.91867 0.94067 1.20884 0.96693 0.94657 1.00777 1.19493 0.93061 0.95404 0.98839 1.21128 0.93859 0.97981 1.01597 1.20851 0.99013 0.94076 1.01878 1.20952 0.94913 0.98084 1.00906 1.21114 0.93769 0.98305 1.01013 1.21015 0.99514 0.92296 0.95094 1.19772 0.82860 0.86904 1.02199 1.44039 1.48999 1.12739 1.25429 1.19128 1.10705 0.92862 1.14576 0.91061 1.25024 0.97867 0.96218 1.00037 1.69955 1.40731 1.03473 1.40852 0.86376 0.80281 0.77831 0.82852 1.21244 1.21554 1.20524 0.88800 0.89963 0.89710 0.88213 0.88334 0.90903 0.90789 0.88707 0.89314 0.74654 0.92588 0.91709 0.91877 0.90809 0.87088 0.87130 0.87001 0.86482 0.88579 0.94029 0.93439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -1.40 10.25 36.01 0.37 -1.04 16 2 C 0.35 3.77 7.27 -29.03 -0.21 3.56 16 3 O -0.46 -6.96 16.72 6.00 0.10 -6.86 16 4 C -0.17 -1.72 5.62 -27.88 -0.16 -1.88 16 5 C -0.09 -1.30 3.79 -26.73 -0.10 -1.41 16 6 C -0.14 -2.01 5.70 -27.89 -0.16 -2.17 16 7 C 0.51 9.27 7.83 -10.99 -0.09 9.18 16 8 O -0.56 -12.14 15.98 5.55 0.09 -12.05 16 9 N -0.69 -12.75 4.01 -60.30 -0.24 -12.99 16 10 C 0.14 2.49 4.45 -4.04 -0.02 2.47 16 11 C 0.16 2.94 3.02 -67.64 -0.20 2.73 16 12 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 13 C -0.09 -1.53 5.21 -28.05 -0.15 -1.68 16 14 C -0.07 -1.21 5.76 -104.60 -0.60 -1.81 16 15 C -0.13 -1.99 9.59 -39.43 -0.38 -2.37 16 16 C -0.14 -2.05 10.04 -39.69 -0.40 -2.44 16 17 C -0.13 -1.96 10.05 -39.67 -0.40 -2.36 16 18 C -0.12 -2.12 9.62 -39.46 -0.38 -2.50 16 19 C -0.08 -1.49 5.82 -104.55 -0.61 -2.10 16 20 C 0.21 4.54 4.80 -5.04 -0.02 4.51 16 21 N -0.59 -12.87 2.85 -166.40 -0.47 -13.35 16 22 C -0.24 -5.80 6.96 -15.06 -0.10 -5.90 16 23 H 0.07 1.77 6.19 -52.48 -0.32 1.45 16 24 C 0.01 0.18 5.08 -17.43 -0.09 0.09 16 25 N -0.91 -23.07 11.07 55.49 0.61 -22.46 16 26 Si 0.90 20.20 29.57 -169.99 -5.03 15.18 16 27 H -0.29 -6.27 7.11 56.52 0.40 -5.87 16 28 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 29 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 30 H 0.09 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 32 H 0.08 0.40 8.12 -51.93 -0.42 -0.02 16 33 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.10 0.74 8.14 -51.93 -0.42 0.31 16 35 H 0.07 1.11 8.06 -51.93 -0.42 0.69 16 36 H 0.07 1.20 8.06 -51.93 -0.42 0.78 16 37 H 0.09 1.35 8.14 -51.92 -0.42 0.93 16 38 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 39 H 0.42 7.87 7.34 -40.82 -0.30 7.57 16 40 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 41 H 0.06 1.30 7.31 -51.93 -0.38 0.92 16 42 H 0.06 0.91 8.11 -51.93 -0.42 0.49 16 43 H 0.07 1.29 8.01 -51.93 -0.42 0.88 16 44 H 0.11 1.48 8.05 -52.49 -0.42 1.06 16 45 H 0.11 1.31 8.06 -52.48 -0.42 0.89 16 46 H 0.11 1.39 8.06 -52.48 -0.42 0.96 16 47 H 0.12 1.89 8.05 -52.49 -0.42 1.46 16 48 H 0.10 2.36 6.46 -51.93 -0.34 2.02 16 49 H 0.04 0.97 8.14 -51.93 -0.42 0.54 16 50 H 0.26 6.43 8.31 -40.82 -0.34 6.10 16 LS Contribution 403.86 15.07 6.09 6.09 Total: -1.00 -29.94 403.86 -10.62 -40.56 By element: Atomic # 1 Polarization: 19.07 SS G_CDS: -8.07 Total: 11.00 kcal Atomic # 6 Polarization: -1.42 SS G_CDS: -3.70 Total: -5.12 kcal Atomic # 7 Polarization: -48.69 SS G_CDS: -0.10 Total: -48.79 kcal Atomic # 8 Polarization: -19.10 SS G_CDS: 0.19 Total: -18.91 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -5.03 Total: 15.18 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -29.94 -10.62 -40.56 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733809114.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.922 kcal (2) G-P(sol) polarization free energy of solvation -29.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds