Wall clock time and date at job start Wed Apr 1 2020 03:05:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 O 1.20761 * 120.00285 * 2 1 4 4 C 1.50698 * 119.99472 * 179.97438 * 2 1 3 5 5 C 1.53005 * 109.46904 * 179.97438 * 4 2 1 6 6 C 1.52999 * 109.47416 * 180.02562 * 5 4 2 7 7 C 1.50690 * 109.47228 * 180.02562 * 6 5 4 8 8 O 1.21288 * 120.00242 * 359.97438 * 7 6 5 9 9 N 1.34774 * 120.00160 * 180.02562 * 7 6 5 10 10 C 1.46501 * 120.00589 * 179.97438 * 9 7 6 11 11 C 1.52999 * 109.47657 * 179.97438 * 10 9 7 12 12 H 1.08996 * 109.76235 * 65.73578 * 11 10 9 13 13 C 1.52782 * 109.77156 * 186.53542 * 11 10 9 14 14 C 1.50598 * 110.85604 * 167.07324 * 13 11 10 15 15 C 1.38981 * 117.61872 * 160.53308 * 14 13 11 16 16 C 1.37905 * 120.57929 * 178.80218 * 15 14 13 17 17 C 1.38269 * 119.82975 * 0.02562 * 16 15 14 18 18 C 1.37956 * 119.71686 * 0.26171 * 17 16 15 19 19 C 1.37678 * 122.85906 * 339.80166 * 14 13 11 20 20 C 1.50803 * 122.34785 * 1.52314 * 19 14 13 21 21 N 1.46684 * 109.67435 * 348.40461 * 20 19 14 22 22 C 1.36941 * 121.32894 * 224.43092 * 21 20 19 23 23 H 1.08007 * 119.99363 * 151.86401 * 22 21 20 24 24 C 1.38810 * 120.00433 * 331.85786 * 22 21 20 25 25 N 1.31622 * 119.99807 * 349.10176 * 24 22 21 26 26 Si 1.86793 * 120.00368 * 169.10056 * 24 22 21 27 27 H 1.48499 * 109.47421 * 89.99901 * 26 24 22 28 28 H 1.48496 * 109.47265 * 210.00218 * 26 24 22 29 29 H 1.48507 * 109.46977 * 330.00190 * 26 24 22 30 30 H 1.09005 * 109.46776 * 270.00488 * 1 2 3 31 31 H 1.09001 * 109.47004 * 29.99997 * 1 2 3 32 32 H 1.08995 * 109.47243 * 150.00233 * 1 2 3 33 33 H 1.08995 * 109.47434 * 299.99737 * 4 2 1 34 34 H 1.08998 * 109.47339 * 60.00446 * 4 2 1 35 35 H 1.09002 * 109.47306 * 300.00844 * 5 4 2 36 36 H 1.09001 * 109.46989 * 60.00037 * 5 4 2 37 37 H 1.09008 * 109.46889 * 300.00189 * 6 5 4 38 38 H 1.08996 * 109.46687 * 59.99940 * 6 5 4 39 39 H 0.97002 * 120.00119 * 359.97438 * 9 7 6 40 40 H 1.09002 * 109.47035 * 300.00652 * 10 9 7 41 41 H 1.09001 * 109.47020 * 59.99697 * 10 9 7 42 42 H 1.08999 * 109.19811 * 287.42025 * 13 11 10 43 43 H 1.08995 * 109.20280 * 46.71196 * 13 11 10 44 44 H 1.08001 * 119.71015 * 358.76265 * 15 14 13 45 45 H 1.08006 * 120.08605 * 180.02562 * 16 15 14 46 46 H 1.08003 * 120.13992 * 180.29109 * 17 16 15 47 47 H 1.07997 * 119.74751 * 179.97438 * 18 17 16 48 48 H 1.08992 * 109.44420 * 228.34187 * 20 19 14 49 49 H 1.08996 * 109.43632 * 108.46014 * 20 19 14 50 50 H 0.96989 * 120.00012 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1109 1.0458 0.0000 4 6 2.2604 -1.3052 0.0006 5 6 3.7648 -1.0256 -0.0002 6 6 4.5297 -2.3507 -0.0002 7 6 6.0113 -2.0753 -0.0004 8 8 6.4156 -0.9318 -0.0009 9 7 6.8871 -3.0997 -0.0009 10 6 8.3275 -2.8322 -0.0016 11 6 9.0924 -4.1572 -0.0016 12 1 8.9113 -4.6874 -0.9365 13 6 10.5880 -3.8905 0.1614 14 6 11.3280 -5.1631 0.4788 15 6 12.6992 -5.1845 0.2530 16 6 13.4409 -6.3097 0.5454 17 6 12.8174 -7.4279 1.0675 18 6 11.4556 -7.4116 1.2872 19 6 10.7072 -6.2807 0.9897 20 6 9.2216 -6.3335 1.2433 21 7 8.6537 -4.9855 1.1338 22 6 7.7519 -4.5161 2.0512 23 1 7.6842 -3.4563 2.2485 24 6 6.9246 -5.4021 2.7275 25 7 6.8505 -6.6583 2.3417 26 14 5.9167 -4.8118 4.1852 27 1 4.5953 -4.3285 3.7102 28 1 5.7201 -5.9337 5.1380 29 1 6.6334 -3.7037 4.8663 30 1 -0.3633 0.0001 1.0277 31 1 -0.3633 0.8900 -0.5138 32 1 -0.3633 -0.8900 -0.5138 33 1 1.9972 -1.8763 0.8908 34 1 1.9972 -1.8771 -0.8892 35 1 4.0278 -0.4545 -0.8906 36 1 4.0284 -0.4535 0.8893 37 1 4.2668 -2.9220 0.8901 38 1 4.2659 -2.9224 -0.8900 39 1 6.5638 -4.0143 -0.0009 40 1 8.5904 -2.2604 -0.8916 41 1 8.5913 -2.2607 0.8883 42 1 10.9799 -3.4694 -0.7644 43 1 10.7387 -3.1766 0.9710 44 1 13.1880 -4.3125 -0.1558 45 1 14.5061 -6.3175 0.3671 46 1 13.3942 -8.3102 1.3028 47 1 10.9680 -8.2849 1.6946 48 1 9.0380 -6.7241 2.2441 49 1 8.7510 -6.9860 0.5079 50 1 6.2722 -7.2774 2.8140 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733809114.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:05:35 Heat of formation + Delta-G solvation = -58.450269 kcal Electronic energy + Delta-G solvation = -30127.751966 eV Core-core repulsion = 26119.107981 eV Total energy + Delta-G solvation = -4008.643984 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.01188 -40.56966 -40.18315 -38.11447 -35.41615 -35.12857 -34.47719 -32.96128 -31.92501 -31.50746 -30.51285 -28.90624 -27.35300 -26.56743 -24.53627 -23.46604 -22.89300 -22.33339 -21.10006 -20.58634 -20.43159 -18.49861 -17.76060 -17.53060 -17.14625 -16.97857 -16.66545 -16.31559 -16.14534 -16.03244 -15.82422 -15.72942 -15.49303 -15.11639 -14.77644 -14.53005 -14.32769 -14.03278 -13.78031 -13.66137 -13.36820 -13.24465 -13.15255 -13.01811 -12.77091 -12.75962 -12.69037 -12.55579 -12.50552 -12.36698 -12.27228 -12.15915 -11.86726 -11.72397 -11.60369 -11.30573 -10.84002 -10.64013 -10.49146 -9.79647 -9.53478 -9.26012 -8.65126 -7.85078 -5.29573 0.58956 0.63069 1.06559 1.41620 1.48506 1.54609 1.80630 2.42674 2.51897 2.98621 3.22132 3.33268 3.51943 3.82117 3.85449 4.05807 4.10585 4.12634 4.19093 4.23741 4.25052 4.39993 4.41360 4.46896 4.53751 4.56521 4.66616 4.70955 4.73138 4.76044 4.80586 4.82734 4.88106 4.92380 4.94598 5.16954 5.20986 5.23328 5.25043 5.27690 5.35602 5.44007 5.52440 5.66031 5.70746 5.74380 5.75308 6.02193 6.28149 6.37373 6.63992 6.80495 7.16402 7.44051 7.81658 8.38218 9.22111 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.015319 B = 0.002702 C = 0.002397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1827.311695 B =10361.337782 C =11678.327136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.350 3.650 3 O -0.514 6.514 4 C -0.171 4.171 5 C -0.090 4.090 6 C -0.133 4.133 7 C 0.500 3.500 8 O -0.602 6.602 9 N -0.695 5.695 10 C 0.141 3.859 11 C 0.161 3.839 12 H 0.044 0.956 13 C -0.085 4.085 14 C -0.085 4.085 15 C -0.128 4.128 16 C -0.131 4.131 17 C -0.127 4.127 18 C -0.137 4.137 19 C -0.108 4.108 20 C 0.224 3.776 21 N -0.600 5.600 22 C -0.233 4.233 23 H 0.059 0.941 24 C -0.028 4.028 25 N -0.925 5.925 26 Si 0.939 3.061 27 H -0.271 1.271 28 H -0.296 1.296 29 H -0.292 1.292 30 H 0.108 0.892 31 H 0.080 0.920 32 H 0.115 0.885 33 H 0.121 0.879 34 H 0.133 0.867 35 H 0.053 0.947 36 H 0.039 0.961 37 H 0.100 0.900 38 H 0.122 0.878 39 H 0.414 0.586 40 H 0.072 0.928 41 H 0.042 0.958 42 H 0.094 0.906 43 H 0.065 0.935 44 H 0.139 0.861 45 H 0.148 0.852 46 H 0.143 0.857 47 H 0.116 0.884 48 H 0.060 0.940 49 H 0.017 0.983 50 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.884 0.831 -7.217 7.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.255 4.255 2 C 0.230 3.770 3 O -0.392 6.392 4 C -0.208 4.208 5 C -0.128 4.128 6 C -0.172 4.172 7 C 0.288 3.712 8 O -0.485 6.485 9 N -0.344 5.344 10 C 0.016 3.984 11 C 0.055 3.945 12 H 0.062 0.938 13 C -0.124 4.124 14 C -0.085 4.085 15 C -0.146 4.146 16 C -0.149 4.149 17 C -0.145 4.145 18 C -0.155 4.155 19 C -0.110 4.110 20 C 0.099 3.901 21 N -0.323 5.323 22 C -0.363 4.363 23 H 0.077 0.923 24 C -0.225 4.225 25 N -0.572 5.572 26 Si 0.769 3.231 27 H -0.197 1.197 28 H -0.222 1.222 29 H -0.219 1.219 30 H 0.126 0.874 31 H 0.099 0.901 32 H 0.133 0.867 33 H 0.139 0.861 34 H 0.151 0.849 35 H 0.071 0.929 36 H 0.058 0.942 37 H 0.118 0.882 38 H 0.140 0.860 39 H 0.251 0.749 40 H 0.091 0.909 41 H 0.060 0.940 42 H 0.112 0.888 43 H 0.083 0.917 44 H 0.156 0.844 45 H 0.166 0.834 46 H 0.161 0.839 47 H 0.134 0.866 48 H 0.079 0.921 49 H 0.034 0.966 50 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -2.408 2.040 -7.143 7.809 hybrid contribution -0.585 -0.377 1.310 1.484 sum -2.993 1.662 -5.833 6.763 Atomic orbital electron populations 1.22309 0.91323 1.05996 1.05837 1.25342 0.93773 0.89873 0.68015 1.90436 1.73386 1.37047 1.38300 1.22266 0.93571 0.97593 1.07336 1.21018 0.94444 0.95418 1.01914 1.21670 0.89456 0.99905 1.06182 1.21247 0.90315 0.84396 0.75284 1.90630 1.81488 1.23101 1.53271 1.45994 1.06135 1.10104 1.72194 1.21160 0.80596 0.96200 1.00395 1.20808 0.92475 0.90555 0.90670 0.93808 1.20825 0.95136 0.94507 1.01962 1.19658 0.94497 0.94974 0.99365 1.21430 0.92755 0.99472 1.00949 1.21323 1.00792 0.93047 0.99737 1.21310 0.93900 0.99561 0.99689 1.21233 0.95091 0.97748 1.01459 1.20804 0.97927 0.94266 0.97990 1.19337 0.85080 0.86314 0.99393 1.44165 1.48867 1.13069 1.26245 1.19064 1.10422 0.92137 1.14656 0.92337 1.25422 0.99018 0.96358 1.01664 1.70072 1.41462 1.04011 1.41608 0.85718 0.79952 0.76622 0.80833 1.19722 1.22238 1.21870 0.87356 0.90135 0.86690 0.86125 0.84894 0.92852 0.94173 0.88210 0.85965 0.74903 0.90946 0.93959 0.88800 0.91686 0.84354 0.83428 0.83925 0.86613 0.92145 0.96555 0.93989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.19 10.25 71.24 0.73 -1.46 16 2 C 0.35 7.15 7.27 29.10 0.21 7.37 16 3 O -0.51 -16.17 16.72 -1.45 -0.02 -16.20 16 4 C -0.17 -3.00 5.62 29.85 0.17 -2.83 16 5 C -0.09 -2.50 3.79 30.60 0.12 -2.38 16 6 C -0.13 -3.66 5.70 29.84 0.17 -3.49 16 7 C 0.50 18.52 7.83 87.65 0.69 19.20 16 8 O -0.60 -26.72 15.98 -3.05 -0.05 -26.77 16 9 N -0.69 -25.82 4.01 -463.06 -1.86 -27.68 16 10 C 0.14 5.22 4.45 86.38 0.38 5.61 16 11 C 0.16 6.02 3.02 44.78 0.14 6.16 16 12 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 13 C -0.09 -2.80 5.21 29.74 0.15 -2.65 16 14 C -0.08 -2.93 5.76 -19.85 -0.11 -3.04 16 15 C -0.13 -3.59 9.59 22.37 0.21 -3.37 16 16 C -0.13 -3.30 10.04 22.20 0.22 -3.08 16 17 C -0.13 -3.45 10.05 22.21 0.22 -3.23 16 18 C -0.14 -4.64 9.62 22.35 0.22 -4.43 16 19 C -0.11 -4.21 5.82 -19.82 -0.12 -4.33 16 20 C 0.22 10.23 4.80 85.63 0.41 10.64 16 21 N -0.60 -27.02 2.85 -680.37 -1.94 -28.96 16 22 C -0.23 -11.42 6.96 84.03 0.58 -10.84 16 23 H 0.06 3.01 6.19 -2.91 -0.02 2.99 16 24 C -0.03 -1.42 5.08 84.86 0.43 -0.99 16 25 N -0.93 -48.65 11.07 21.65 0.24 -48.41 16 26 Si 0.94 42.14 29.57 68.60 2.03 44.17 16 27 H -0.27 -11.44 7.11 99.48 0.71 -10.74 16 28 H -0.30 -13.52 7.11 99.48 0.71 -12.81 16 29 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 30 H 0.11 0.95 8.14 -2.38 -0.02 0.94 16 31 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.11 0.60 8.12 -2.39 -0.02 0.58 16 33 H 0.12 1.69 8.14 -2.39 -0.02 1.67 16 34 H 0.13 1.47 8.14 -2.39 -0.02 1.45 16 35 H 0.05 1.67 8.06 -2.39 -0.02 1.65 16 36 H 0.04 1.36 8.06 -2.39 -0.02 1.34 16 37 H 0.10 2.71 8.14 -2.38 -0.02 2.69 16 38 H 0.12 2.57 8.14 -2.39 -0.02 2.55 16 39 H 0.41 15.83 7.34 -92.71 -0.68 15.15 16 40 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 41 H 0.04 1.76 7.31 -2.39 -0.02 1.74 16 42 H 0.09 2.49 8.11 -2.39 -0.02 2.47 16 43 H 0.06 2.25 8.01 -2.39 -0.02 2.23 16 44 H 0.14 3.09 8.05 -2.91 -0.02 3.06 16 45 H 0.15 2.66 8.06 -2.91 -0.02 2.64 16 46 H 0.14 2.97 8.06 -2.91 -0.02 2.95 16 47 H 0.12 3.82 8.05 -2.91 -0.02 3.79 16 48 H 0.06 3.14 6.46 -2.39 -0.02 3.13 16 49 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 50 H 0.25 12.99 8.31 -92.72 -0.77 12.22 16 Total: -1.00 -69.91 403.86 3.48 -66.43 By element: Atomic # 1 Polarization: 34.31 SS G_CDS: 0.25 Total: 34.57 kcal Atomic # 6 Polarization: -1.98 SS G_CDS: 4.83 Total: 2.85 kcal Atomic # 7 Polarization: -101.49 SS G_CDS: -3.56 Total: -105.05 kcal Atomic # 8 Polarization: -42.90 SS G_CDS: -0.07 Total: -42.97 kcal Atomic # 14 Polarization: 42.14 SS G_CDS: 2.03 Total: 44.17 kcal Total: -69.91 3.48 -66.43 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733809114.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.983 kcal (2) G-P(sol) polarization free energy of solvation -69.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds