Wall clock time and date at job start Wed Apr 1 2020 03:04:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42893 * 109.47286 * 2 1 4 4 C 1.42904 * 114.00222 * 179.97438 * 3 2 1 5 5 C 1.52999 * 109.47311 * 179.97438 * 4 3 2 6 6 C 1.50700 * 115.55389 * 294.85452 * 5 4 3 7 7 O 1.21286 * 119.99796 * 99.24091 * 6 5 4 8 8 N 1.34770 * 120.00078 * 279.24712 * 6 5 4 9 9 C 1.46500 * 120.00239 * 174.98263 * 8 6 5 10 10 C 1.50701 * 109.47207 * 179.97438 * 9 8 6 11 11 C 1.38247 * 120.01915 * 90.00637 * 10 9 8 12 12 C 1.38143 * 119.96130 * 179.97438 * 11 10 9 13 13 C 1.38453 * 120.10576 * 0.27025 * 12 11 10 14 14 C 1.38065 * 119.92733 * 359.45172 * 13 12 11 15 15 C 1.38155 * 120.01851 * 269.97934 * 10 9 8 16 16 C 1.50778 * 108.85925 * 180.35285 * 14 13 12 17 17 N 1.46639 * 107.70353 * 0.25170 * 16 14 13 18 18 C 1.36932 * 126.56759 * 180.02562 * 17 16 14 19 19 H 1.07999 * 120.00149 * 0.02562 * 18 17 16 20 20 C 1.38807 * 120.00176 * 179.97438 * 18 17 16 21 21 N 1.31617 * 119.99955 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00166 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47115 * 0.02562 * 22 20 18 24 24 H 1.48496 * 109.47459 * 119.99786 * 22 20 18 25 25 H 1.48504 * 109.47304 * 240.00364 * 22 20 18 26 26 C 1.46644 * 106.87061 * 359.97438 * 17 16 14 27 27 C 1.53004 * 117.51356 * 80.55474 * 5 4 3 28 28 C 1.52993 * 117.49578 * 149.18128 * 5 4 3 29 29 H 1.09007 * 109.47278 * 60.00027 * 1 2 3 30 30 H 1.08994 * 109.47566 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47133 * 300.00472 * 1 2 3 32 32 H 1.08996 * 109.46779 * 239.99858 * 2 1 3 33 33 H 1.08997 * 109.46769 * 120.00208 * 2 1 3 34 34 H 1.09002 * 109.46603 * 59.99742 * 4 3 2 35 35 H 1.08996 * 109.46998 * 299.99979 * 4 3 2 36 36 H 0.97003 * 119.99895 * 354.98597 * 8 6 5 37 37 H 1.09007 * 109.46565 * 60.00239 * 9 8 6 38 38 H 1.08993 * 109.47062 * 300.00377 * 9 8 6 39 39 H 1.08003 * 120.02220 * 359.97438 * 11 10 9 40 40 H 1.08008 * 119.94605 * 180.02562 * 12 11 10 41 41 H 1.08005 * 119.94603 * 0.02562 * 15 10 9 42 42 H 1.09000 * 109.81853 * 119.79903 * 16 14 13 43 43 H 1.09005 * 109.81271 * 240.70344 * 16 14 13 44 44 H 0.97009 * 119.99876 * 179.97438 * 21 20 18 45 45 H 1.08997 * 109.80954 * 119.54510 * 26 17 16 46 46 H 1.08995 * 109.81215 * 240.38652 * 26 17 16 47 47 H 1.09002 * 117.49467 * 214.97039 * 27 5 4 48 48 H 1.08994 * 117.50282 * 359.97438 * 27 5 4 49 49 H 1.08998 * 117.50191 * 359.97438 * 28 5 4 50 50 H 1.09008 * 117.49897 * 144.97318 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4309 1.4600 0.0006 5 6 3.8255 2.9383 -0.0001 6 6 3.4416 3.7130 -1.2344 7 8 2.4467 4.4067 -1.2299 8 7 4.2036 3.6348 -2.3432 9 6 3.7731 4.2987 -3.5762 10 6 4.7945 4.0599 -4.6583 11 6 4.6808 2.9583 -5.4858 12 6 5.6175 2.7409 -6.4776 13 6 6.6733 3.6215 -6.6408 14 6 6.7836 4.7248 -5.8180 15 6 5.8447 4.9421 -4.8242 16 6 8.0076 5.5097 -6.2168 17 7 8.6357 4.8140 -7.3445 18 6 9.7722 5.1943 -8.0069 19 1 10.2977 6.0892 -7.7079 20 6 10.2496 4.4290 -9.0620 21 7 9.6101 3.3376 -9.4255 22 14 11.8004 4.9474 -9.9652 23 1 12.3268 6.2000 -9.3660 24 1 12.8223 3.8763 -9.8491 25 1 11.4852 5.1778 -11.3980 26 6 7.8143 3.6323 -7.6263 27 6 3.7920 3.6794 1.3380 28 6 5.1334 3.3206 0.6955 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 3.8340 0.9763 -0.8892 35 1 3.8333 0.9767 0.8908 36 1 5.0371 3.1389 -2.3250 37 1 3.6771 5.3697 -3.3976 38 1 2.8104 3.8948 -3.8893 39 1 3.8602 2.2681 -5.3570 40 1 5.5282 1.8804 -7.1243 41 1 5.9333 5.8026 -4.1775 42 1 7.7189 6.5166 -6.5184 43 1 8.7037 5.5594 -5.3794 44 1 9.9435 2.8030 -10.1631 45 1 7.4269 3.6858 -8.6437 46 1 8.4127 2.7293 -7.5059 47 1 3.4922 4.7273 1.3255 48 1 3.4884 3.1141 2.2191 49 1 5.7126 2.5191 1.1541 50 1 5.7165 4.1322 0.2602 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733835595.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:04:13 Heat of formation + Delta-G solvation = -2.857597 kcal Electronic energy + Delta-G solvation = -29161.766844 eV Core-core repulsion = 25155.533539 eV Total energy + Delta-G solvation = -4006.233305 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.42356 -39.62489 -38.27782 -36.78944 -36.22254 -34.47637 -32.27290 -31.66639 -31.18573 -29.78007 -27.86639 -27.20714 -26.05714 -24.78442 -23.24335 -22.88289 -22.66328 -22.01791 -20.45446 -20.25674 -19.60068 -17.61471 -17.04738 -16.78548 -16.33716 -16.07426 -15.87809 -15.56283 -15.03256 -14.91172 -14.39596 -14.34170 -14.27275 -14.11105 -13.69234 -13.57186 -13.22035 -13.04125 -12.90623 -12.50822 -12.32273 -12.00735 -11.93131 -11.88484 -11.81305 -11.69222 -11.57436 -11.55894 -11.11055 -10.99895 -10.88226 -10.63019 -10.49807 -10.23931 -10.14383 -10.01075 -9.84219 -9.81385 -9.15543 -8.98530 -8.44218 -8.04630 -6.88883 -5.85128 -3.18399 1.55425 1.72078 2.49561 2.87460 3.14055 3.34607 3.39959 3.42671 3.60997 4.10096 4.25972 4.37812 4.43535 4.50209 4.64093 4.69510 4.74152 4.83661 4.96244 5.00529 5.02056 5.16086 5.23390 5.23538 5.29525 5.34179 5.39944 5.41008 5.49901 5.53995 5.55500 5.57294 5.69623 5.73605 5.79914 5.83834 5.99872 6.08915 6.30875 6.47400 6.51134 6.52625 6.74280 6.77312 6.84361 7.02537 7.29419 7.31925 7.42695 7.49802 7.65895 8.09660 8.13159 9.07870 9.67729 10.34676 11.29047 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.019417 B = 0.001939 C = 0.001879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1441.724885 B =14437.420910 C =14901.552766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.056 3.944 3 O -0.378 6.378 4 C 0.108 3.892 5 C -0.160 4.160 6 C 0.554 3.446 7 O -0.530 6.530 8 N -0.721 5.721 9 C 0.170 3.830 10 C -0.131 4.131 11 C -0.103 4.103 12 C -0.112 4.112 13 C -0.081 4.081 14 C -0.107 4.107 15 C -0.084 4.084 16 C 0.175 3.825 17 N -0.601 5.601 18 C -0.225 4.225 19 H 0.084 0.916 20 C -0.008 4.008 21 N -0.923 5.923 22 Si 0.918 3.082 23 H -0.278 1.278 24 H -0.289 1.289 25 H -0.289 1.289 26 C 0.205 3.795 27 C -0.135 4.135 28 C -0.155 4.155 29 H 0.064 0.936 30 H 0.070 0.930 31 H 0.063 0.937 32 H 0.048 0.952 33 H 0.047 0.953 34 H 0.058 0.942 35 H 0.060 0.940 36 H 0.403 0.597 37 H 0.073 0.927 38 H 0.073 0.927 39 H 0.118 0.882 40 H 0.121 0.879 41 H 0.116 0.884 42 H 0.037 0.963 43 H 0.036 0.964 44 H 0.255 0.745 45 H 0.065 0.935 46 H 0.064 0.936 47 H 0.103 0.897 48 H 0.104 0.896 49 H 0.106 0.894 50 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.431 -6.397 20.291 25.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.020 4.020 3 O -0.298 6.298 4 C 0.031 3.969 5 C -0.163 4.163 6 C 0.339 3.661 7 O -0.405 6.405 8 N -0.373 5.373 9 C 0.048 3.952 10 C -0.131 4.131 11 C -0.122 4.122 12 C -0.131 4.131 13 C -0.082 4.082 14 C -0.107 4.107 15 C -0.103 4.103 16 C 0.050 3.950 17 N -0.327 5.327 18 C -0.353 4.353 19 H 0.102 0.898 20 C -0.204 4.204 21 N -0.570 5.570 22 Si 0.748 3.252 23 H -0.203 1.203 24 H -0.216 1.216 25 H -0.216 1.216 26 C 0.081 3.919 27 C -0.173 4.173 28 C -0.193 4.193 29 H 0.083 0.917 30 H 0.089 0.911 31 H 0.082 0.918 32 H 0.066 0.934 33 H 0.065 0.935 34 H 0.076 0.924 35 H 0.078 0.922 36 H 0.237 0.763 37 H 0.092 0.908 38 H 0.091 0.909 39 H 0.136 0.864 40 H 0.139 0.861 41 H 0.134 0.866 42 H 0.054 0.946 43 H 0.054 0.946 44 H 0.065 0.935 45 H 0.082 0.918 46 H 0.082 0.918 47 H 0.122 0.878 48 H 0.123 0.877 49 H 0.125 0.875 50 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -14.145 -5.790 20.082 25.236 hybrid contribution 1.344 -0.390 -0.640 1.539 sum -12.802 -6.180 19.442 24.084 Atomic orbital electron populations 1.21731 0.93580 1.02152 1.03363 1.22474 0.95865 0.83695 0.99990 1.88013 1.20158 1.26236 1.95359 1.21780 0.82284 0.91913 1.00879 1.21319 1.04855 0.95908 0.94265 1.19308 0.82901 0.80836 0.83066 1.90698 1.26469 1.39924 1.83431 1.46127 1.25519 1.55031 1.10593 1.20106 0.95753 0.97929 0.81445 1.19463 0.97469 0.97301 0.98899 1.20818 0.98893 0.96921 0.95573 1.20499 0.94124 0.99674 0.98757 1.21548 0.96068 0.93623 0.96956 1.20720 0.96959 0.97260 0.95761 1.20301 0.93463 0.99017 0.97474 1.19707 0.89640 0.94337 0.91333 1.43966 1.27956 1.25628 1.35167 1.19028 0.98915 1.07289 1.10057 0.89781 1.24844 0.99503 0.97262 0.98820 1.69935 1.40361 1.16294 1.30413 0.85948 0.82120 0.77700 0.79408 1.20349 1.21621 1.21597 1.19741 0.86799 0.91605 0.93777 1.22947 0.98826 1.01636 0.93844 1.23167 0.89982 1.03831 1.02280 0.91719 0.91106 0.91819 0.93355 0.93457 0.92418 0.92219 0.76290 0.90831 0.90917 0.86377 0.86134 0.86553 0.94565 0.94614 0.93507 0.91750 0.91811 0.87827 0.87719 0.87547 0.87557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 10.28 37.16 0.38 -0.68 16 2 C 0.06 0.44 6.66 37.16 0.25 0.68 16 3 O -0.38 -4.09 10.27 -35.23 -0.36 -4.45 16 4 C 0.11 0.92 5.76 37.16 0.21 1.14 16 5 C -0.16 -1.51 2.13 -155.66 -0.33 -1.85 16 6 C 0.55 6.93 6.91 -10.99 -0.08 6.85 16 7 O -0.53 -8.76 17.01 5.55 0.09 -8.67 16 8 N -0.72 -7.97 5.55 -61.47 -0.34 -8.31 16 9 C 0.17 2.06 5.80 -5.19 -0.03 2.03 16 10 C -0.13 -1.76 5.25 -104.65 -0.55 -2.31 16 11 C -0.10 -1.42 9.70 -39.61 -0.38 -1.81 16 12 C -0.11 -1.82 10.05 -39.54 -0.40 -2.22 16 13 C -0.08 -1.59 6.22 -104.57 -0.65 -2.24 16 14 C -0.11 -1.98 6.22 -104.57 -0.65 -2.64 16 15 C -0.08 -1.26 9.70 -39.54 -0.38 -1.65 16 16 C 0.18 3.70 7.25 -5.08 -0.04 3.67 16 17 N -0.60 -15.38 3.41 -175.67 -0.60 -15.98 16 18 C -0.23 -6.18 10.32 -15.06 -0.16 -6.33 16 19 H 0.08 2.21 7.83 -52.49 -0.41 1.79 16 20 C -0.01 -0.22 5.49 -17.43 -0.10 -0.31 16 21 N -0.92 -26.45 10.44 55.49 0.58 -25.87 16 22 Si 0.92 21.60 29.55 -169.99 -5.02 16.58 16 23 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 24 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 25 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 26 C 0.21 4.97 5.40 -5.08 -0.03 4.94 16 27 C -0.14 -1.12 9.88 -26.73 -0.26 -1.39 16 28 C -0.16 -1.06 9.92 -26.73 -0.27 -1.33 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 34 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.06 0.38 8.09 -51.93 -0.42 -0.04 16 36 H 0.40 3.83 8.47 -40.82 -0.35 3.48 16 37 H 0.07 0.92 8.09 -51.93 -0.42 0.50 16 38 H 0.07 0.89 8.09 -51.93 -0.42 0.47 16 39 H 0.12 1.35 8.06 -52.48 -0.42 0.93 16 40 H 0.12 1.78 8.06 -52.48 -0.42 1.35 16 41 H 0.12 1.54 8.06 -52.48 -0.42 1.12 16 42 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 44 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 45 H 0.06 1.71 7.49 -51.93 -0.39 1.33 16 46 H 0.06 1.69 7.48 -51.93 -0.39 1.30 16 47 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 48 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 49 H 0.11 0.52 8.14 -51.93 -0.42 0.10 16 50 H 0.11 0.73 8.14 -51.92 -0.42 0.31 16 LS Contribution 416.23 15.07 6.27 6.27 Total: -1.00 -32.86 416.23 -11.10 -43.96 By element: Atomic # 1 Polarization: 10.17 SS G_CDS: -8.27 Total: 1.90 kcal Atomic # 6 Polarization: -1.98 SS G_CDS: -3.45 Total: -5.43 kcal Atomic # 7 Polarization: -49.80 SS G_CDS: -0.36 Total: -50.16 kcal Atomic # 8 Polarization: -12.85 SS G_CDS: -0.27 Total: -13.12 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 6.27 Total: 6.27 kcal Total: -32.86 -11.10 -43.96 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733835595.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.101 kcal (2) G-P(sol) polarization free energy of solvation -32.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.959 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds