Wall clock time and date at job start Wed Apr 1 2020 03:04:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42893 * 109.47286 * 2 1 4 4 C 1.42904 * 114.00222 * 179.97438 * 3 2 1 5 5 C 1.52999 * 109.47311 * 179.97438 * 4 3 2 6 6 C 1.50700 * 115.55389 * 294.85452 * 5 4 3 7 7 O 1.21286 * 119.99796 * 99.24091 * 6 5 4 8 8 N 1.34770 * 120.00078 * 279.24712 * 6 5 4 9 9 C 1.46500 * 120.00239 * 174.98263 * 8 6 5 10 10 C 1.50701 * 109.47207 * 179.97438 * 9 8 6 11 11 C 1.38247 * 120.01915 * 90.00637 * 10 9 8 12 12 C 1.38143 * 119.96130 * 179.97438 * 11 10 9 13 13 C 1.38453 * 120.10576 * 0.27025 * 12 11 10 14 14 C 1.38065 * 119.92733 * 359.45172 * 13 12 11 15 15 C 1.38155 * 120.01851 * 269.97934 * 10 9 8 16 16 C 1.50778 * 108.85925 * 180.35285 * 14 13 12 17 17 N 1.46639 * 107.70353 * 0.25170 * 16 14 13 18 18 C 1.36932 * 126.56759 * 180.02562 * 17 16 14 19 19 H 1.07999 * 120.00149 * 0.02562 * 18 17 16 20 20 C 1.38807 * 120.00176 * 179.97438 * 18 17 16 21 21 N 1.31617 * 119.99955 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00166 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47115 * 0.02562 * 22 20 18 24 24 H 1.48496 * 109.47459 * 119.99786 * 22 20 18 25 25 H 1.48504 * 109.47304 * 240.00364 * 22 20 18 26 26 C 1.46644 * 106.87061 * 359.97438 * 17 16 14 27 27 C 1.53004 * 117.51356 * 80.55474 * 5 4 3 28 28 C 1.52993 * 117.49578 * 149.18128 * 5 4 3 29 29 H 1.09007 * 109.47278 * 60.00027 * 1 2 3 30 30 H 1.08994 * 109.47566 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47133 * 300.00472 * 1 2 3 32 32 H 1.08996 * 109.46779 * 239.99858 * 2 1 3 33 33 H 1.08997 * 109.46769 * 120.00208 * 2 1 3 34 34 H 1.09002 * 109.46603 * 59.99742 * 4 3 2 35 35 H 1.08996 * 109.46998 * 299.99979 * 4 3 2 36 36 H 0.97003 * 119.99895 * 354.98597 * 8 6 5 37 37 H 1.09007 * 109.46565 * 60.00239 * 9 8 6 38 38 H 1.08993 * 109.47062 * 300.00377 * 9 8 6 39 39 H 1.08003 * 120.02220 * 359.97438 * 11 10 9 40 40 H 1.08008 * 119.94605 * 180.02562 * 12 11 10 41 41 H 1.08005 * 119.94603 * 0.02562 * 15 10 9 42 42 H 1.09000 * 109.81853 * 119.79903 * 16 14 13 43 43 H 1.09005 * 109.81271 * 240.70344 * 16 14 13 44 44 H 0.97009 * 119.99876 * 179.97438 * 21 20 18 45 45 H 1.08997 * 109.80954 * 119.54510 * 26 17 16 46 46 H 1.08995 * 109.81215 * 240.38652 * 26 17 16 47 47 H 1.09002 * 117.49467 * 214.97039 * 27 5 4 48 48 H 1.08994 * 117.50282 * 359.97438 * 27 5 4 49 49 H 1.08998 * 117.50191 * 359.97438 * 28 5 4 50 50 H 1.09008 * 117.49897 * 144.97318 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4309 1.4600 0.0006 5 6 3.8255 2.9383 -0.0001 6 6 3.4416 3.7130 -1.2344 7 8 2.4467 4.4067 -1.2299 8 7 4.2036 3.6348 -2.3432 9 6 3.7731 4.2987 -3.5762 10 6 4.7945 4.0599 -4.6583 11 6 4.6808 2.9583 -5.4858 12 6 5.6175 2.7409 -6.4776 13 6 6.6733 3.6215 -6.6408 14 6 6.7836 4.7248 -5.8180 15 6 5.8447 4.9421 -4.8242 16 6 8.0076 5.5097 -6.2168 17 7 8.6357 4.8140 -7.3445 18 6 9.7722 5.1943 -8.0069 19 1 10.2977 6.0892 -7.7079 20 6 10.2496 4.4290 -9.0620 21 7 9.6101 3.3376 -9.4255 22 14 11.8004 4.9474 -9.9652 23 1 12.3268 6.2000 -9.3660 24 1 12.8223 3.8763 -9.8491 25 1 11.4852 5.1778 -11.3980 26 6 7.8143 3.6323 -7.6263 27 6 3.7920 3.6794 1.3380 28 6 5.1334 3.3206 0.6955 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 3.8340 0.9763 -0.8892 35 1 3.8333 0.9767 0.8908 36 1 5.0371 3.1389 -2.3250 37 1 3.6771 5.3697 -3.3976 38 1 2.8104 3.8948 -3.8893 39 1 3.8602 2.2681 -5.3570 40 1 5.5282 1.8804 -7.1243 41 1 5.9333 5.8026 -4.1775 42 1 7.7189 6.5166 -6.5184 43 1 8.7037 5.5594 -5.3794 44 1 9.9435 2.8030 -10.1631 45 1 7.4269 3.6858 -8.6437 46 1 8.4127 2.7293 -7.5059 47 1 3.4922 4.7273 1.3255 48 1 3.4884 3.1141 2.2191 49 1 5.7126 2.5191 1.1541 50 1 5.7165 4.1322 0.2602 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733835595.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:04:12 Heat of formation + Delta-G solvation = -22.827371 kcal Electronic energy + Delta-G solvation = -29162.632799 eV Core-core repulsion = 25155.533539 eV Total energy + Delta-G solvation = -4007.099260 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.39938 -40.91235 -39.03577 -37.94413 -37.26762 -35.73617 -34.08615 -32.50533 -32.21578 -31.42110 -29.17841 -28.08348 -27.66897 -26.22486 -23.99798 -23.72549 -23.44062 -23.23573 -22.11236 -21.47683 -20.57069 -19.00560 -18.35708 -17.45049 -17.23242 -17.10106 -16.92580 -16.69472 -16.33385 -16.10002 -16.05037 -15.73793 -15.49306 -15.05885 -14.86427 -14.51541 -14.38965 -14.23086 -13.59978 -13.51041 -13.47559 -13.39083 -13.31931 -13.09251 -13.06572 -13.03437 -12.73441 -12.47337 -12.40446 -12.14001 -12.06002 -11.99594 -11.84048 -11.68328 -11.61283 -11.24186 -10.98166 -10.82482 -10.51142 -10.13577 -9.73541 -9.59380 -8.85684 -7.94255 -5.31047 0.25341 0.43739 1.45893 1.47342 1.57428 1.58054 2.12672 2.36513 2.44068 2.83709 3.02354 3.28398 3.44423 3.52883 3.63054 3.73113 3.79206 3.91057 3.96048 4.03605 4.12208 4.17005 4.30336 4.32154 4.46125 4.49413 4.50498 4.57624 4.63058 4.69180 4.73218 4.76336 4.82388 4.83589 4.88838 4.96158 4.97606 5.02819 5.16328 5.17778 5.26024 5.28934 5.31280 5.36586 5.43711 5.51549 5.55452 5.85293 6.02776 6.09106 6.27274 6.53681 6.99866 7.21781 7.64625 8.32440 9.19113 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.019417 B = 0.001939 C = 0.001879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1441.724885 B =14437.420910 C =14901.552766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.051 3.949 3 O -0.411 6.411 4 C 0.106 3.894 5 C -0.177 4.177 6 C 0.552 3.448 7 O -0.577 6.577 8 N -0.711 5.711 9 C 0.175 3.825 10 C -0.107 4.107 11 C -0.088 4.088 12 C -0.109 4.109 13 C -0.111 4.111 14 C -0.116 4.116 15 C -0.075 4.075 16 C 0.171 3.829 17 N -0.624 5.624 18 C -0.243 4.243 19 H 0.091 0.909 20 C -0.066 4.066 21 N -0.953 5.953 22 Si 0.988 3.012 23 H -0.263 1.263 24 H -0.289 1.289 25 H -0.291 1.291 26 C 0.221 3.779 27 C -0.144 4.144 28 C -0.130 4.130 29 H 0.048 0.952 30 H 0.091 0.909 31 H 0.057 0.943 32 H 0.054 0.946 33 H 0.065 0.935 34 H 0.064 0.936 35 H 0.085 0.915 36 H 0.413 0.587 37 H 0.073 0.927 38 H 0.077 0.923 39 H 0.152 0.848 40 H 0.131 0.869 41 H 0.140 0.860 42 H 0.040 0.960 43 H 0.044 0.956 44 H 0.251 0.749 45 H 0.023 0.977 46 H 0.026 0.974 47 H 0.086 0.914 48 H 0.119 0.881 49 H 0.133 0.867 50 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.861 -6.945 22.599 27.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.025 4.025 3 O -0.331 6.331 4 C 0.030 3.970 5 C -0.180 4.180 6 C 0.339 3.661 7 O -0.456 6.456 8 N -0.363 5.363 9 C 0.052 3.948 10 C -0.108 4.108 11 C -0.106 4.106 12 C -0.128 4.128 13 C -0.112 4.112 14 C -0.116 4.116 15 C -0.094 4.094 16 C 0.047 3.953 17 N -0.351 5.351 18 C -0.371 4.371 19 H 0.109 0.891 20 C -0.259 4.259 21 N -0.601 5.601 22 Si 0.815 3.185 23 H -0.187 1.187 24 H -0.216 1.216 25 H -0.218 1.218 26 C 0.096 3.904 27 C -0.181 4.181 28 C -0.167 4.167 29 H 0.067 0.933 30 H 0.110 0.890 31 H 0.076 0.924 32 H 0.072 0.928 33 H 0.083 0.917 34 H 0.082 0.918 35 H 0.103 0.897 36 H 0.249 0.751 37 H 0.092 0.908 38 H 0.095 0.905 39 H 0.170 0.830 40 H 0.149 0.851 41 H 0.158 0.842 42 H 0.058 0.942 43 H 0.062 0.938 44 H 0.060 0.940 45 H 0.041 0.959 46 H 0.044 0.956 47 H 0.105 0.895 48 H 0.137 0.863 49 H 0.152 0.848 50 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -14.560 -6.336 22.414 27.468 hybrid contribution 1.366 -0.208 -1.270 1.876 sum -13.194 -6.543 21.144 25.768 Atomic orbital electron populations 1.21763 0.93573 1.03218 1.02281 1.22641 0.95992 0.82793 1.01102 1.87980 1.21572 1.27960 1.95609 1.21930 0.81449 0.91260 1.02369 1.21356 1.07246 0.96281 0.93101 1.19847 0.82077 0.80190 0.83966 1.90676 1.28526 1.42083 1.84311 1.46012 1.25713 1.54567 1.09961 1.20017 0.95238 0.98203 0.81323 1.19596 0.96528 0.96212 0.98439 1.21127 0.98547 0.97134 0.93835 1.20675 0.93368 0.99256 0.99484 1.21195 0.96561 0.96130 0.97287 1.20563 0.97137 0.96755 0.97179 1.20478 0.92574 0.99911 0.96405 1.19806 0.90871 0.94488 0.90165 1.44265 1.27981 1.26511 1.36320 1.19442 0.99746 1.07524 1.10387 0.89127 1.25768 1.02779 0.97458 0.99861 1.70162 1.41839 1.17355 1.30723 0.84878 0.78172 0.77746 0.77703 1.18676 1.21628 1.21767 1.19280 0.87765 0.89948 0.93413 1.23007 1.00330 1.00846 0.93927 1.23285 0.89018 1.04124 1.00232 0.93281 0.88987 0.92379 0.92787 0.91672 0.91807 0.89715 0.75080 0.90850 0.90503 0.82998 0.85069 0.84247 0.94192 0.93828 0.94021 0.95861 0.95641 0.89508 0.86322 0.84849 0.87519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.94 10.28 71.98 0.74 -1.20 16 2 C 0.05 0.69 6.66 71.98 0.48 1.16 16 3 O -0.41 -8.19 10.27 -148.98 -1.53 -9.72 16 4 C 0.11 1.52 5.76 71.98 0.41 1.93 16 5 C -0.18 -2.92 2.13 -52.93 -0.11 -3.04 16 6 C 0.55 12.82 6.91 87.66 0.61 13.43 16 7 O -0.58 -18.67 17.01 -3.05 -0.05 -18.73 16 8 N -0.71 -13.71 5.55 -466.79 -2.59 -16.30 16 9 C 0.18 3.71 5.80 85.63 0.50 4.20 16 10 C -0.11 -2.54 5.25 -19.88 -0.10 -2.65 16 11 C -0.09 -2.14 9.70 22.25 0.22 -1.92 16 12 C -0.11 -3.43 10.05 22.30 0.22 -3.20 16 13 C -0.11 -4.42 6.22 -19.83 -0.12 -4.55 16 14 C -0.12 -4.25 6.22 -19.83 -0.12 -4.37 16 15 C -0.07 -2.08 9.70 22.30 0.22 -1.86 16 16 C 0.17 7.32 7.25 85.63 0.62 7.94 16 17 N -0.62 -33.24 3.41 -709.70 -2.42 -35.66 16 18 C -0.24 -13.72 10.32 84.03 0.87 -12.85 16 19 H 0.09 4.83 7.83 -2.91 -0.02 4.80 16 20 C -0.07 -3.73 5.49 84.86 0.47 -3.26 16 21 N -0.95 -57.24 10.44 21.65 0.23 -57.02 16 22 Si 0.99 45.34 29.55 68.60 2.03 47.36 16 23 H -0.26 -11.25 7.11 99.48 0.71 -10.54 16 24 H -0.29 -13.20 7.11 99.48 0.71 -12.49 16 25 H -0.29 -13.33 7.11 99.48 0.71 -12.62 16 26 C 0.22 11.36 5.40 85.63 0.46 11.82 16 27 C -0.14 -2.11 9.88 30.60 0.30 -1.81 16 28 C -0.13 -1.35 9.92 30.59 0.30 -1.05 16 29 H 0.05 0.77 8.14 -2.38 -0.02 0.75 16 30 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 33 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 34 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 35 H 0.08 0.77 8.09 -2.39 -0.02 0.75 16 36 H 0.41 6.43 8.47 -92.71 -0.79 5.65 16 37 H 0.07 1.63 8.09 -2.38 -0.02 1.61 16 38 H 0.08 1.64 8.09 -2.39 -0.02 1.63 16 39 H 0.15 2.76 8.06 -2.91 -0.02 2.74 16 40 H 0.13 3.76 8.06 -2.91 -0.02 3.74 16 41 H 0.14 3.24 8.06 -2.91 -0.02 3.22 16 42 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 43 H 0.04 1.78 8.14 -2.38 -0.02 1.77 16 44 H 0.25 14.50 8.31 -92.70 -0.77 13.73 16 45 H 0.02 1.35 7.49 -2.39 -0.02 1.33 16 46 H 0.03 1.46 7.48 -2.39 -0.02 1.44 16 47 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 48 H 0.12 1.37 8.14 -2.39 -0.02 1.35 16 49 H 0.13 0.70 8.14 -2.39 -0.02 0.68 16 50 H 0.11 1.13 8.14 -2.38 -0.02 1.11 16 Total: -1.00 -75.77 416.23 1.76 -74.01 By element: Atomic # 1 Polarization: 17.18 SS G_CDS: 0.15 Total: 17.33 kcal Atomic # 6 Polarization: -7.23 SS G_CDS: 5.95 Total: -1.28 kcal Atomic # 7 Polarization: -104.20 SS G_CDS: -4.78 Total: -108.98 kcal Atomic # 8 Polarization: -26.86 SS G_CDS: -1.58 Total: -28.44 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 2.03 Total: 47.36 kcal Total: -75.77 1.76 -74.01 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733835595.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.180 kcal (2) G-P(sol) polarization free energy of solvation -75.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.007 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds