Wall clock time and date at job start Wed Apr 1 2020 03:06:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42906 * 109.46752 * 2 1 4 4 C 1.42898 * 113.99824 * 180.02562 * 3 2 1 5 5 C 1.52999 * 109.47174 * 180.02562 * 4 3 2 6 6 C 1.52999 * 109.47137 * 180.02562 * 5 4 3 7 7 N 1.46902 * 109.47233 * 179.97438 * 6 5 4 8 8 C 1.46846 * 110.99824 * 45.78642 * 7 6 5 9 9 C 1.53034 * 109.52006 * 185.84182 * 8 7 6 10 10 C 1.53115 * 109.28153 * 300.81851 * 9 8 7 11 11 H 1.09000 * 109.52812 * 177.55807 * 10 9 8 12 12 N 1.46499 * 109.52506 * 297.75290 * 10 9 8 13 13 C 1.34779 * 120.00278 * 274.68194 * 12 10 9 14 14 O 1.21288 * 119.99582 * 359.97438 * 13 12 10 15 15 C 1.50697 * 120.00415 * 179.97438 * 13 12 10 16 16 S 1.80998 * 109.47007 * 179.97438 * 15 13 12 17 17 C 1.76207 * 99.99809 * 180.02562 * 16 15 13 18 18 H 1.08003 * 119.99676 * 359.97438 * 17 16 15 19 19 C 1.38795 * 119.99906 * 180.02562 * 17 16 15 20 20 N 1.31631 * 120.00024 * 180.02562 * 19 17 16 21 21 Si 1.86795 * 120.00063 * 359.97438 * 19 17 16 22 22 H 1.48502 * 109.47122 * 90.00511 * 21 19 17 23 23 H 1.48500 * 109.47224 * 210.00466 * 21 19 17 24 24 H 1.48503 * 109.47058 * 330.00340 * 21 19 17 25 25 C 1.53124 * 109.15985 * 57.65658 * 10 9 8 26 26 C 1.46841 * 111.00157 * 169.99920 * 7 6 5 27 27 H 1.09001 * 109.46348 * 294.16405 * 26 7 6 28 28 C 1.52998 * 109.46339 * 54.13885 * 26 7 6 29 29 H 1.09001 * 109.46801 * 59.99865 * 1 2 3 30 30 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47050 * 299.99753 * 1 2 3 32 32 H 1.08993 * 109.46955 * 120.00418 * 2 1 3 33 33 H 1.09000 * 109.47050 * 240.00247 * 2 1 3 34 34 H 1.09008 * 109.46688 * 300.00244 * 4 3 2 35 35 H 1.09002 * 109.47367 * 59.99723 * 4 3 2 36 36 H 1.08995 * 109.46853 * 299.99672 * 5 4 3 37 37 H 1.08998 * 109.47106 * 59.99533 * 5 4 3 38 38 H 1.09008 * 109.46645 * 299.99752 * 6 5 4 39 39 H 1.09002 * 109.47448 * 59.99254 * 6 5 4 40 40 H 1.09002 * 109.46496 * 305.86020 * 8 7 6 41 41 H 1.09004 * 109.46529 * 65.82268 * 8 7 6 42 42 H 1.09005 * 109.50017 * 180.87885 * 9 8 7 43 43 H 1.09004 * 109.50706 * 60.76697 * 9 8 7 44 44 H 0.97000 * 119.99915 * 94.67783 * 12 10 9 45 45 H 1.09001 * 109.46724 * 299.99748 * 15 13 12 46 46 H 1.08995 * 109.46856 * 59.99667 * 15 13 12 47 47 H 0.97001 * 120.00216 * 179.97438 * 20 19 17 48 48 H 1.08994 * 109.50508 * 182.40954 * 25 10 9 49 49 H 1.08996 * 109.49947 * 62.28359 * 25 10 9 50 50 H 1.09003 * 109.46819 * 60.00682 * 28 26 7 51 51 H 1.09004 * 109.46899 * 179.97438 * 28 26 7 52 52 H 1.08996 * 109.47825 * 300.00027 * 28 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 3.4308 1.4602 -0.0006 5 6 3.8253 2.9385 0.0001 6 6 5.3505 3.0594 -0.0012 7 7 5.7293 4.4787 -0.0011 8 6 4.9421 5.2334 0.9824 9 6 5.2578 6.7253 0.8538 10 6 6.7540 6.9477 1.0908 11 1 6.9911 8.0033 0.9575 12 7 7.1006 6.5352 2.4531 13 6 6.9486 7.3976 3.4777 14 8 6.5254 8.5154 3.2717 15 6 7.3046 6.9730 4.8792 16 16 6.9929 8.3418 6.0217 17 6 7.4813 7.5909 7.5391 18 1 7.8398 6.5722 7.5466 19 6 7.4042 8.3084 8.7248 20 7 7.7695 7.7476 9.8582 21 14 6.7834 10.0701 8.7117 22 1 5.3105 10.0773 8.9015 23 1 7.4280 10.8302 9.8126 24 1 7.1181 10.7032 7.4108 25 6 7.5518 6.1132 0.0849 26 6 7.1696 4.6390 0.2358 27 1 7.4115 4.3026 1.2440 28 6 7.9496 3.8034 -0.7812 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5139 0.8899 33 1 1.8934 -0.5138 -0.8900 34 1 3.8340 0.9765 0.8892 35 1 3.8333 0.9768 -0.8908 36 1 3.4222 3.4225 -0.8894 37 1 3.4229 3.4215 0.8905 38 1 5.7540 2.5752 0.8882 39 1 5.7526 2.5764 -0.8918 40 1 3.8800 5.0698 0.8001 41 1 5.1944 4.8940 1.9871 42 1 4.6850 7.2835 1.5944 43 1 4.9927 7.0685 -0.1463 44 1 7.4394 5.6413 2.6178 45 1 6.6957 6.1152 5.1645 46 1 8.3589 6.6997 4.9192 47 1 7.7160 8.2491 10.6868 48 1 8.6180 6.2341 0.2762 49 1 7.3228 6.4467 -0.9272 50 1 7.7076 4.1395 -1.7895 51 1 9.0188 3.9227 -0.6057 52 1 7.6783 2.7533 -0.6733 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733894694.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:06:11 Heat of formation + Delta-G solvation = -94.232037 kcal Electronic energy + Delta-G solvation = -28141.957323 eV Core-core repulsion = 24267.205676 eV Total energy + Delta-G solvation = -3874.751647 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.192 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.45682 -38.83661 -38.30339 -35.56510 -33.60723 -32.46166 -32.43048 -31.77905 -30.41549 -28.82081 -27.35565 -25.73214 -25.55758 -23.84711 -23.18914 -21.75589 -21.14357 -20.94510 -19.11553 -17.91178 -17.17353 -16.78877 -16.51997 -16.17212 -16.05018 -15.46682 -15.24782 -15.05917 -14.94239 -14.72893 -14.17311 -14.11297 -13.95195 -13.50384 -13.36505 -13.09142 -12.91240 -12.80921 -12.70450 -12.36914 -12.19651 -12.17641 -12.05953 -11.89815 -11.80445 -11.63738 -11.34764 -11.27749 -11.26285 -11.13299 -11.01005 -10.62962 -10.59794 -10.38818 -9.98298 -9.85615 -9.48950 -9.01682 -8.95170 -8.54321 -8.50045 -6.91724 -6.29231 -4.00828 2.77572 2.99086 3.12120 3.31623 3.35155 3.50561 3.63366 3.69868 4.33021 4.42528 4.49272 4.52974 4.62787 4.65831 4.69417 4.73490 4.85234 4.88908 4.95116 4.96765 4.99910 5.05944 5.08657 5.09846 5.12726 5.23734 5.31032 5.32950 5.35465 5.41837 5.45880 5.49042 5.56159 5.66830 5.71307 5.74387 5.75373 5.79407 5.81917 5.85385 5.96212 5.98981 6.01514 6.10126 6.62390 6.76138 6.84254 6.85792 7.62810 7.93818 8.41070 8.51565 9.16987 10.79995 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.010705 B = 0.002198 C = 0.001947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2614.894360 B =12737.652196 C =14377.559442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.057 3.943 3 O -0.390 6.390 4 C 0.065 3.935 5 C -0.124 4.124 6 C 0.059 3.941 7 N -0.530 5.530 8 C 0.049 3.951 9 C -0.127 4.127 10 C 0.144 3.856 11 H 0.090 0.910 12 N -0.732 5.732 13 C 0.531 3.469 14 O -0.519 6.519 15 C -0.125 4.125 16 S -0.140 6.140 17 C -0.521 4.521 18 H 0.087 0.913 19 C 0.095 3.905 20 N -0.881 5.881 21 Si 0.857 3.143 22 H -0.267 1.267 23 H -0.274 1.274 24 H -0.235 1.235 25 C -0.117 4.117 26 C 0.081 3.919 27 H 0.040 0.960 28 C -0.148 4.148 29 H 0.063 0.937 30 H 0.070 0.930 31 H 0.064 0.936 32 H 0.048 0.952 33 H 0.047 0.953 34 H 0.047 0.953 35 H 0.048 0.952 36 H 0.080 0.920 37 H 0.076 0.924 38 H 0.034 0.966 39 H 0.079 0.921 40 H 0.083 0.917 41 H 0.036 0.964 42 H 0.075 0.925 43 H 0.078 0.922 44 H 0.395 0.605 45 H 0.094 0.906 46 H 0.096 0.904 47 H 0.271 0.729 48 H 0.074 0.926 49 H 0.086 0.914 50 H 0.065 0.935 51 H 0.061 0.939 52 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.818 -15.589 -25.595 30.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.019 4.019 3 O -0.309 6.309 4 C -0.012 4.012 5 C -0.161 4.161 6 C -0.069 4.069 7 N -0.256 5.256 8 C -0.078 4.078 9 C -0.166 4.166 10 C 0.039 3.961 11 H 0.108 0.892 12 N -0.387 5.387 13 C 0.317 3.683 14 O -0.393 6.393 15 C -0.275 4.275 16 S 0.086 5.914 17 C -0.669 4.669 18 H 0.105 0.895 19 C -0.114 4.114 20 N -0.517 5.517 21 Si 0.682 3.318 22 H -0.192 1.192 23 H -0.199 1.199 24 H -0.159 1.159 25 C -0.156 4.156 26 C -0.028 4.028 27 H 0.058 0.942 28 C -0.205 4.205 29 H 0.082 0.918 30 H 0.089 0.911 31 H 0.083 0.917 32 H 0.066 0.934 33 H 0.065 0.935 34 H 0.066 0.934 35 H 0.067 0.933 36 H 0.099 0.901 37 H 0.094 0.906 38 H 0.053 0.947 39 H 0.097 0.903 40 H 0.101 0.899 41 H 0.054 0.946 42 H 0.094 0.906 43 H 0.097 0.903 44 H 0.229 0.771 45 H 0.113 0.887 46 H 0.114 0.886 47 H 0.081 0.919 48 H 0.093 0.907 49 H 0.105 0.895 50 H 0.084 0.916 51 H 0.080 0.920 52 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -6.715 -13.348 -26.201 30.162 hybrid contribution 0.804 -1.767 1.520 2.466 sum -5.911 -15.115 -24.681 29.539 Atomic orbital electron populations 1.21752 0.93664 1.02269 1.03269 1.22458 0.95708 0.83757 1.00003 1.87890 1.21120 1.26470 1.95426 1.22422 0.81312 0.97429 1.00071 1.21671 0.95275 0.94968 1.04231 1.22012 0.94606 0.89297 1.01005 1.62035 1.04089 1.09182 1.50252 1.22212 0.98509 0.93841 0.93249 1.21977 0.96318 0.95442 1.02850 1.20940 0.94234 0.99878 0.81013 0.89161 1.46134 1.68724 1.16893 1.06925 1.20261 0.76971 0.84872 0.86161 1.90695 1.43861 1.20096 1.84651 1.23283 1.05080 1.04760 0.94408 1.84782 1.86948 1.17860 1.01826 1.22319 1.50481 1.03192 0.90902 0.89457 1.24720 0.93761 0.98578 0.94307 1.69940 1.45860 1.37604 0.98316 0.86726 0.80094 0.84621 0.80357 1.19206 1.19945 1.15914 1.21931 0.99896 0.93623 1.00110 1.21625 0.87589 0.95945 0.97621 0.94184 1.21903 0.99543 0.99408 0.99671 0.91829 0.91094 0.91726 0.93414 0.93487 0.93434 0.93334 0.90126 0.90552 0.94733 0.90287 0.89888 0.94562 0.90605 0.90347 0.77079 0.88747 0.88615 0.91948 0.90694 0.89528 0.91600 0.92025 0.92546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.91 10.28 37.16 0.38 -0.53 16 2 C 0.06 0.40 6.66 37.16 0.25 0.64 16 3 O -0.39 -3.67 10.34 -35.23 -0.36 -4.04 16 4 C 0.06 0.49 5.94 37.16 0.22 0.71 16 5 C -0.12 -0.97 4.83 -26.73 -0.13 -1.10 16 6 C 0.06 0.43 4.36 -3.82 -0.02 0.41 16 7 N -0.53 -4.47 4.64 -226.69 -1.05 -5.52 16 8 C 0.05 0.48 4.70 -3.84 -0.02 0.47 16 9 C -0.13 -1.39 5.76 -26.65 -0.15 -1.54 16 10 C 0.14 1.61 2.81 -67.81 -0.19 1.42 16 11 H 0.09 1.17 7.58 -51.93 -0.39 0.78 16 12 N -0.73 -9.27 4.34 -53.69 -0.23 -9.51 16 13 C 0.53 9.34 7.82 -10.99 -0.09 9.26 16 14 O -0.52 -11.04 15.53 5.55 0.09 -10.95 16 15 C -0.12 -2.42 6.16 36.00 0.22 -2.20 16 16 S -0.14 -3.57 18.55 -107.50 -1.99 -5.57 16 17 C -0.52 -15.08 10.04 30.94 0.31 -14.77 16 18 H 0.09 2.63 8.03 -52.48 -0.42 2.21 16 19 C 0.09 2.79 5.50 -17.43 -0.10 2.69 16 20 N -0.88 -26.66 13.97 55.49 0.78 -25.88 16 21 Si 0.86 21.90 27.74 -169.99 -4.71 17.18 16 22 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 23 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 24 H -0.24 -6.00 6.74 56.52 0.38 -5.62 16 25 C -0.12 -0.98 5.04 -26.65 -0.13 -1.12 16 26 C 0.08 0.63 2.24 -67.73 -0.15 0.48 16 27 H 0.04 0.34 6.64 -51.93 -0.34 -0.01 16 28 C -0.15 -0.94 8.78 37.16 0.33 -0.62 16 29 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.07 0.30 8.14 -51.93 -0.42 -0.13 16 31 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.05 0.30 8.14 -51.93 -0.42 -0.13 16 33 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 34 H 0.05 0.33 8.14 -51.92 -0.42 -0.09 16 35 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 36 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.08 0.68 6.21 -51.93 -0.32 0.36 16 38 H 0.03 0.26 8.08 -51.92 -0.42 -0.16 16 39 H 0.08 0.51 6.84 -51.93 -0.36 0.16 16 40 H 0.08 0.80 5.81 -51.93 -0.30 0.50 16 41 H 0.04 0.40 7.69 -51.93 -0.40 0.00 16 42 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 43 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 44 H 0.39 4.17 7.01 -40.82 -0.29 3.88 16 45 H 0.09 1.72 8.14 -51.92 -0.42 1.30 16 46 H 0.10 1.73 8.14 -51.92 -0.42 1.31 16 47 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 48 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 49 H 0.09 0.69 8.14 -51.93 -0.42 0.26 16 50 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 51 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 52 H 0.06 0.34 6.55 -51.93 -0.34 -0.01 16 LS Contribution 416.00 15.07 6.27 6.27 Total: -1.00 -33.57 416.00 -10.00 -43.57 By element: Atomic # 1 Polarization: 9.73 SS G_CDS: -9.50 Total: 0.22 kcal Atomic # 6 Polarization: -6.51 SS G_CDS: 0.73 Total: -5.78 kcal Atomic # 7 Polarization: -40.40 SS G_CDS: -0.51 Total: -40.91 kcal Atomic # 8 Polarization: -14.71 SS G_CDS: -0.28 Total: -14.99 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -4.71 Total: 17.18 kcal Atomic # 16 Polarization: -3.57 SS G_CDS: -1.99 Total: -5.57 kcal Total LS contribution 6.27 Total: 6.27 kcal Total: -33.57 -10.00 -43.57 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733894694.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.663 kcal (2) G-P(sol) polarization free energy of solvation -33.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds