Wall clock time and date at job start Wed Apr 1 2020 03:06:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42906 * 109.46752 * 2 1 4 4 C 1.42898 * 113.99824 * 180.02562 * 3 2 1 5 5 C 1.52999 * 109.47174 * 180.02562 * 4 3 2 6 6 C 1.52999 * 109.47137 * 180.02562 * 5 4 3 7 7 N 1.46902 * 109.47233 * 179.97438 * 6 5 4 8 8 C 1.46846 * 110.99824 * 45.78642 * 7 6 5 9 9 C 1.53034 * 109.52006 * 185.84182 * 8 7 6 10 10 C 1.53115 * 109.28153 * 300.81851 * 9 8 7 11 11 H 1.09000 * 109.52812 * 177.55807 * 10 9 8 12 12 N 1.46499 * 109.52506 * 297.75290 * 10 9 8 13 13 C 1.34779 * 120.00278 * 274.68194 * 12 10 9 14 14 O 1.21288 * 119.99582 * 359.97438 * 13 12 10 15 15 C 1.50697 * 120.00415 * 179.97438 * 13 12 10 16 16 S 1.80998 * 109.47007 * 179.97438 * 15 13 12 17 17 C 1.76207 * 99.99809 * 180.02562 * 16 15 13 18 18 H 1.08003 * 119.99676 * 359.97438 * 17 16 15 19 19 C 1.38795 * 119.99906 * 180.02562 * 17 16 15 20 20 N 1.31631 * 120.00024 * 180.02562 * 19 17 16 21 21 Si 1.86795 * 120.00063 * 359.97438 * 19 17 16 22 22 H 1.48502 * 109.47122 * 90.00511 * 21 19 17 23 23 H 1.48500 * 109.47224 * 210.00466 * 21 19 17 24 24 H 1.48503 * 109.47058 * 330.00340 * 21 19 17 25 25 C 1.53124 * 109.15985 * 57.65658 * 10 9 8 26 26 C 1.46841 * 111.00157 * 169.99920 * 7 6 5 27 27 H 1.09001 * 109.46348 * 294.16405 * 26 7 6 28 28 C 1.52998 * 109.46339 * 54.13885 * 26 7 6 29 29 H 1.09001 * 109.46801 * 59.99865 * 1 2 3 30 30 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47050 * 299.99753 * 1 2 3 32 32 H 1.08993 * 109.46955 * 120.00418 * 2 1 3 33 33 H 1.09000 * 109.47050 * 240.00247 * 2 1 3 34 34 H 1.09008 * 109.46688 * 300.00244 * 4 3 2 35 35 H 1.09002 * 109.47367 * 59.99723 * 4 3 2 36 36 H 1.08995 * 109.46853 * 299.99672 * 5 4 3 37 37 H 1.08998 * 109.47106 * 59.99533 * 5 4 3 38 38 H 1.09008 * 109.46645 * 299.99752 * 6 5 4 39 39 H 1.09002 * 109.47448 * 59.99254 * 6 5 4 40 40 H 1.09002 * 109.46496 * 305.86020 * 8 7 6 41 41 H 1.09004 * 109.46529 * 65.82268 * 8 7 6 42 42 H 1.09005 * 109.50017 * 180.87885 * 9 8 7 43 43 H 1.09004 * 109.50706 * 60.76697 * 9 8 7 44 44 H 0.97000 * 119.99915 * 94.67783 * 12 10 9 45 45 H 1.09001 * 109.46724 * 299.99748 * 15 13 12 46 46 H 1.08995 * 109.46856 * 59.99667 * 15 13 12 47 47 H 0.97001 * 120.00216 * 179.97438 * 20 19 17 48 48 H 1.08994 * 109.50508 * 182.40954 * 25 10 9 49 49 H 1.08996 * 109.49947 * 62.28359 * 25 10 9 50 50 H 1.09003 * 109.46819 * 60.00682 * 28 26 7 51 51 H 1.09004 * 109.46899 * 179.97438 * 28 26 7 52 52 H 1.08996 * 109.47825 * 300.00027 * 28 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 3.4308 1.4602 -0.0006 5 6 3.8253 2.9385 0.0001 6 6 5.3505 3.0594 -0.0012 7 7 5.7293 4.4787 -0.0011 8 6 4.9421 5.2334 0.9824 9 6 5.2578 6.7253 0.8538 10 6 6.7540 6.9477 1.0908 11 1 6.9911 8.0033 0.9575 12 7 7.1006 6.5352 2.4531 13 6 6.9486 7.3976 3.4777 14 8 6.5254 8.5154 3.2717 15 6 7.3046 6.9730 4.8792 16 16 6.9929 8.3418 6.0217 17 6 7.4813 7.5909 7.5391 18 1 7.8398 6.5722 7.5466 19 6 7.4042 8.3084 8.7248 20 7 7.7695 7.7476 9.8582 21 14 6.7834 10.0701 8.7117 22 1 5.3105 10.0773 8.9015 23 1 7.4280 10.8302 9.8126 24 1 7.1181 10.7032 7.4108 25 6 7.5518 6.1132 0.0849 26 6 7.1696 4.6390 0.2358 27 1 7.4115 4.3026 1.2440 28 6 7.9496 3.8034 -0.7812 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5139 0.8899 33 1 1.8934 -0.5138 -0.8900 34 1 3.8340 0.9765 0.8892 35 1 3.8333 0.9768 -0.8908 36 1 3.4222 3.4225 -0.8894 37 1 3.4229 3.4215 0.8905 38 1 5.7540 2.5752 0.8882 39 1 5.7526 2.5764 -0.8918 40 1 3.8800 5.0698 0.8001 41 1 5.1944 4.8940 1.9871 42 1 4.6850 7.2835 1.5944 43 1 4.9927 7.0685 -0.1463 44 1 7.4394 5.6413 2.6178 45 1 6.6957 6.1152 5.1645 46 1 8.3589 6.6997 4.9192 47 1 7.7160 8.2491 10.6868 48 1 8.6180 6.2341 0.2762 49 1 7.3228 6.4467 -0.9272 50 1 7.7076 4.1395 -1.7895 51 1 9.0188 3.9227 -0.6057 52 1 7.6783 2.7533 -0.6733 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733894694.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:06:10 Heat of formation + Delta-G solvation = -117.133091 kcal Electronic energy + Delta-G solvation = -28142.950387 eV Core-core repulsion = 24267.205676 eV Total energy + Delta-G solvation = -3875.744711 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.192 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.43381 -39.90426 -39.00109 -36.50962 -34.69072 -34.38139 -33.30594 -32.58053 -31.22888 -30.09152 -28.04745 -27.85133 -26.36880 -24.55376 -23.69973 -22.67644 -22.13842 -21.70096 -20.06408 -19.93029 -17.99252 -17.76270 -17.42045 -17.18761 -17.03210 -16.89587 -16.53185 -16.16716 -15.89325 -15.58133 -15.38495 -15.11373 -15.05746 -14.87872 -14.53133 -14.24490 -13.84822 -13.66440 -13.43900 -13.37271 -13.31711 -13.03747 -12.96941 -12.82452 -12.76121 -12.63674 -12.54812 -12.42147 -12.29950 -11.99158 -11.90660 -11.87875 -11.76710 -11.39787 -11.18651 -11.15400 -10.98532 -10.55895 -10.55609 -10.12102 -9.24264 -9.01225 -8.53121 -6.23963 0.97335 1.30260 1.45583 1.54641 1.55985 2.21217 2.25538 2.55457 2.70299 2.85020 3.01482 3.66642 3.76605 3.86159 3.88464 4.02999 4.07466 4.14914 4.15961 4.18645 4.24223 4.33362 4.38402 4.40232 4.42774 4.46492 4.47533 4.50852 4.55013 4.68571 4.78559 4.80904 4.83209 4.90751 4.95568 5.00600 5.01963 5.06993 5.14535 5.18390 5.20269 5.23028 5.26998 5.42015 5.53205 5.69047 6.08671 6.09493 6.17027 6.29001 6.43777 6.91958 7.18096 8.59267 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.010705 B = 0.002198 C = 0.001947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2614.894360 B =12737.652196 C =14377.559442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.050 3.950 3 O -0.416 6.416 4 C 0.064 3.936 5 C -0.118 4.118 6 C 0.062 3.938 7 N -0.530 5.530 8 C 0.056 3.944 9 C -0.122 4.122 10 C 0.142 3.858 11 H 0.073 0.927 12 N -0.707 5.707 13 C 0.537 3.463 14 O -0.559 6.559 15 C -0.112 4.112 16 S -0.173 6.173 17 C -0.529 4.529 18 H 0.061 0.939 19 C 0.045 3.955 20 N -0.916 5.916 21 Si 0.915 3.085 22 H -0.263 1.263 23 H -0.258 1.258 24 H -0.237 1.237 25 C -0.108 4.108 26 C 0.078 3.922 27 H 0.038 0.962 28 C -0.143 4.143 29 H 0.058 0.942 30 H 0.090 0.910 31 H 0.053 0.947 32 H 0.053 0.947 33 H 0.060 0.940 34 H 0.051 0.949 35 H 0.064 0.936 36 H 0.073 0.927 37 H 0.060 0.940 38 H 0.036 0.964 39 H 0.094 0.906 40 H 0.083 0.917 41 H 0.024 0.976 42 H 0.048 0.952 43 H 0.089 0.911 44 H 0.409 0.591 45 H 0.108 0.892 46 H 0.112 0.888 47 H 0.277 0.723 48 H 0.085 0.915 49 H 0.097 0.903 50 H 0.067 0.933 51 H 0.069 0.931 52 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.436 -16.681 -27.694 32.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.026 4.026 3 O -0.337 6.337 4 C -0.013 4.013 5 C -0.156 4.156 6 C -0.065 4.065 7 N -0.256 5.256 8 C -0.072 4.072 9 C -0.161 4.161 10 C 0.038 3.962 11 H 0.091 0.909 12 N -0.361 5.361 13 C 0.322 3.678 14 O -0.437 6.437 15 C -0.263 4.263 16 S 0.054 5.946 17 C -0.677 4.677 18 H 0.079 0.921 19 C -0.161 4.161 20 N -0.554 5.554 21 Si 0.737 3.263 22 H -0.187 1.187 23 H -0.182 1.182 24 H -0.161 1.161 25 C -0.146 4.146 26 C -0.030 4.030 27 H 0.056 0.944 28 C -0.200 4.200 29 H 0.078 0.922 30 H 0.108 0.892 31 H 0.073 0.927 32 H 0.071 0.929 33 H 0.078 0.922 34 H 0.070 0.930 35 H 0.082 0.918 36 H 0.092 0.908 37 H 0.079 0.921 38 H 0.054 0.946 39 H 0.113 0.887 40 H 0.101 0.899 41 H 0.042 0.958 42 H 0.066 0.934 43 H 0.108 0.892 44 H 0.246 0.754 45 H 0.126 0.874 46 H 0.130 0.870 47 H 0.087 0.913 48 H 0.103 0.897 49 H 0.115 0.885 50 H 0.086 0.914 51 H 0.088 0.912 52 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -6.316 -14.494 -28.327 32.440 hybrid contribution 0.685 -1.576 2.059 2.682 sum -5.632 -16.070 -26.267 31.304 Atomic orbital electron populations 1.21781 0.93276 1.03329 1.02538 1.22637 0.96148 0.82907 1.00875 1.87858 1.22157 1.28045 1.95613 1.22479 0.80689 0.97144 1.00967 1.21591 0.95647 0.95238 1.03079 1.22028 0.94126 0.88570 1.01773 1.62050 1.04355 1.09793 1.49391 1.22086 0.98895 0.93152 0.93048 1.21900 0.95638 0.96024 1.02561 1.21093 0.95010 0.99660 0.80432 0.90885 1.45931 1.66907 1.16660 1.06641 1.19915 0.76848 0.84790 0.86218 1.90687 1.46125 1.21887 1.85050 1.23272 1.06462 1.02495 0.94077 1.84701 1.87087 1.21130 1.01689 1.22458 1.50076 1.02319 0.92835 0.92052 1.25575 0.93980 1.02465 0.94050 1.70016 1.46985 1.39360 0.99075 0.85859 0.79768 0.80070 0.80621 1.18732 1.18247 1.16072 1.21895 0.99869 0.93409 0.99414 1.21696 0.87326 0.95772 0.98188 0.94417 1.21864 0.99730 0.99386 0.99034 0.92242 0.89165 0.92741 0.92882 0.92192 0.93040 0.91817 0.90842 0.92098 0.94587 0.88731 0.89909 0.95762 0.93366 0.89241 0.75424 0.87363 0.86978 0.91348 0.89669 0.88473 0.91444 0.91169 0.91864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.68 10.28 71.98 0.74 -0.94 16 2 C 0.05 0.64 6.66 71.98 0.48 1.12 16 3 O -0.42 -7.53 10.34 -148.98 -1.54 -9.07 16 4 C 0.06 0.87 5.94 71.98 0.43 1.29 16 5 C -0.12 -1.70 4.83 30.59 0.15 -1.56 16 6 C 0.06 0.78 4.36 86.30 0.38 1.15 16 7 N -0.53 -7.82 4.64 -871.11 -4.04 -11.86 16 8 C 0.06 1.04 4.70 86.33 0.41 1.45 16 9 C -0.12 -2.60 5.76 30.64 0.18 -2.42 16 10 C 0.14 3.00 2.81 45.07 0.13 3.13 16 11 H 0.07 1.85 7.58 -2.39 -0.02 1.84 16 12 N -0.71 -16.96 4.34 -442.15 -1.92 -18.88 16 13 C 0.54 18.51 7.82 87.66 0.69 19.20 16 14 O -0.56 -23.88 15.53 -3.05 -0.05 -23.93 16 15 C -0.11 -4.27 6.16 71.24 0.44 -3.83 16 16 S -0.17 -8.79 18.55 -56.49 -1.05 -9.84 16 17 C -0.53 -31.02 10.04 67.95 0.68 -30.34 16 18 H 0.06 3.79 8.03 -2.91 -0.02 3.77 16 19 C 0.04 2.64 5.50 84.86 0.47 3.11 16 20 N -0.92 -56.04 13.97 21.65 0.30 -55.74 16 21 Si 0.91 45.33 27.74 68.60 1.90 47.23 16 22 H -0.26 -12.71 7.11 99.48 0.71 -12.01 16 23 H -0.26 -11.97 7.11 99.48 0.71 -11.26 16 24 H -0.24 -11.72 6.74 99.48 0.67 -11.05 16 25 C -0.11 -1.53 5.04 30.65 0.15 -1.37 16 26 C 0.08 1.02 2.24 44.94 0.10 1.12 16 27 H 0.04 0.52 6.64 -2.39 -0.02 0.51 16 28 C -0.14 -1.34 8.78 71.98 0.63 -0.71 16 29 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 30 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.05 0.59 8.14 -2.39 -0.02 0.58 16 33 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 34 H 0.05 0.65 8.14 -2.38 -0.02 0.63 16 35 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 36 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 37 H 0.06 1.06 6.21 -2.39 -0.01 1.05 16 38 H 0.04 0.46 8.08 -2.38 -0.02 0.44 16 39 H 0.09 0.93 6.84 -2.39 -0.02 0.91 16 40 H 0.08 1.56 5.81 -2.39 -0.01 1.54 16 41 H 0.02 0.51 7.69 -2.39 -0.02 0.49 16 42 H 0.05 1.30 8.14 -2.38 -0.02 1.28 16 43 H 0.09 1.70 8.14 -2.38 -0.02 1.68 16 44 H 0.41 7.74 7.01 -92.71 -0.65 7.09 16 45 H 0.11 3.84 8.14 -2.39 -0.02 3.82 16 46 H 0.11 3.92 8.14 -2.40 -0.02 3.90 16 47 H 0.28 15.65 8.31 -92.71 -0.77 14.88 16 48 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 49 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 50 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 51 H 0.07 0.57 8.14 -2.38 -0.02 0.55 16 52 H 0.06 0.53 6.55 -2.39 -0.02 0.51 16 Total: -1.00 -73.17 416.00 -0.16 -73.33 By element: Atomic # 1 Polarization: 18.16 SS G_CDS: 0.20 Total: 18.35 kcal Atomic # 6 Polarization: -15.64 SS G_CDS: 6.04 Total: -9.60 kcal Atomic # 7 Polarization: -80.83 SS G_CDS: -5.66 Total: -86.49 kcal Atomic # 8 Polarization: -31.41 SS G_CDS: -1.59 Total: -32.99 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 1.90 Total: 47.23 kcal Atomic # 16 Polarization: -8.79 SS G_CDS: -1.05 Total: -9.84 kcal Total: -73.17 -0.16 -73.33 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733894694.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.804 kcal (2) G-P(sol) polarization free energy of solvation -73.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds