Wall clock time and date at job start Wed Apr 1 2020 02:58:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35903 * 117.00224 * 2 1 4 4 C 1.38755 * 120.05492 * 359.97438 * 3 2 1 5 5 C 1.38116 * 119.94123 * 179.72926 * 4 3 2 6 6 C 1.38287 * 120.06102 * 0.02562 * 5 4 3 7 7 C 1.38241 * 120.10676 * 359.97438 * 6 5 4 8 8 C 1.50705 * 119.97218 * 180.02562 * 7 6 5 9 9 H 1.08991 * 115.55256 * 154.32978 * 8 7 6 10 10 C 1.53003 * 117.49468 * 8.61631 * 8 7 6 11 11 C 1.52997 * 60.00061 * 252.51104 * 10 8 7 12 12 H 1.09005 * 117.49630 * 107.48917 * 11 10 8 13 13 C 1.50697 * 117.52365 * 252.51726 * 11 10 8 14 14 O 1.21282 * 119.99834 * 68.63102 * 13 11 10 15 15 N 1.34778 * 120.00259 * 248.63309 * 13 11 10 16 16 C 1.46500 * 119.99934 * 180.02562 * 15 13 11 17 17 C 1.52997 * 109.47006 * 179.97438 * 16 15 13 18 18 H 1.09006 * 110.88493 * 51.11725 * 17 16 15 19 19 C 1.55159 * 111.00609 * 174.99788 * 17 16 15 20 20 C 1.54316 * 102.94252 * 153.57735 * 19 17 16 21 21 N 1.47028 * 107.27352 * 337.80302 * 20 19 17 22 22 C 1.36927 * 125.65023 * 178.96194 * 21 20 19 23 23 H 1.08002 * 120.00170 * 179.97438 * 22 21 20 24 24 C 1.38820 * 120.00022 * 359.97438 * 22 21 20 25 25 N 1.31610 * 120.00025 * 359.97438 * 24 22 21 26 26 Si 1.86797 * 119.99763 * 179.97438 * 24 22 21 27 27 H 1.48495 * 109.47491 * 0.02562 * 26 24 22 28 28 H 1.48505 * 109.46990 * 120.00358 * 26 24 22 29 29 H 1.48499 * 109.47065 * 239.99697 * 26 24 22 30 30 C 1.47427 * 108.69850 * 358.94768 * 21 20 19 31 31 C 1.38168 * 120.05773 * 359.97438 * 7 6 5 32 32 H 1.09004 * 109.46917 * 300.00870 * 1 2 3 33 33 H 1.08998 * 109.46815 * 60.00240 * 1 2 3 34 34 H 1.08999 * 109.47402 * 180.02562 * 1 2 3 35 35 H 1.08000 * 120.02684 * 359.70397 * 4 3 2 36 36 H 1.08002 * 119.97134 * 180.02562 * 5 4 3 37 37 H 1.08000 * 119.94875 * 179.97438 * 6 5 4 38 38 H 1.08998 * 117.50263 * 0.02562 * 10 8 7 39 39 H 1.09007 * 117.49436 * 145.02309 * 10 8 7 40 40 H 0.96994 * 119.99796 * 359.97438 * 15 13 11 41 41 H 1.08997 * 109.46708 * 299.99688 * 16 15 13 42 42 H 1.08996 * 109.46998 * 59.99870 * 16 15 13 43 43 H 1.08997 * 110.71988 * 271.93954 * 19 17 16 44 44 H 1.08998 * 110.71894 * 35.03526 * 19 17 16 45 45 H 1.08998 * 109.88610 * 97.22950 * 20 19 17 46 46 H 1.09004 * 109.88312 * 218.39411 * 20 19 17 47 47 H 0.97002 * 120.00048 * 179.97438 * 25 24 22 48 48 H 1.08997 * 110.36210 * 265.27926 * 30 21 20 49 49 H 1.08999 * 110.36190 * 142.96405 * 30 21 20 50 50 H 1.08008 * 120.02680 * 180.02562 * 31 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2109 0.0000 4 6 1.2915 2.3753 -0.0005 5 6 1.9210 3.6047 0.0051 6 6 3.3020 3.6757 0.0108 7 6 4.0560 2.5170 0.0113 8 6 5.5609 2.5980 0.0181 9 1 6.0761 1.7372 0.4443 10 6 6.1932 3.9754 0.2274 11 6 6.2349 3.3163 -1.1526 12 1 5.5899 3.7302 -1.9278 13 6 7.5603 2.7796 -1.6283 14 8 8.0529 1.8129 -1.0861 15 7 8.1984 3.3737 -2.6561 16 6 9.4866 2.8515 -3.1188 17 6 9.9909 3.7005 -4.2874 18 1 9.9735 4.7605 -4.0337 19 6 11.4118 3.2566 -4.7249 20 6 11.4614 3.6714 -6.2105 21 7 10.0725 3.7758 -6.6812 22 6 9.6825 4.1404 -7.9421 23 1 8.6324 4.1869 -8.1903 24 6 10.6368 4.4504 -8.9014 25 7 11.9164 4.3942 -8.5989 26 14 10.1046 4.9472 -10.6217 27 1 8.6221 4.9334 -10.7047 28 1 10.6039 6.3138 -10.9190 29 1 10.6651 3.9899 -11.6090 30 6 9.1693 3.4224 -5.5709 31 6 3.4311 1.2847 0.0068 32 1 -0.3633 0.5140 0.8899 33 1 -0.3633 0.5138 -0.8900 34 1 -0.3634 -1.0276 0.0005 35 1 0.2129 2.3204 -0.0058 36 1 1.3342 4.5113 0.0051 37 1 3.7924 4.6380 0.0148 38 1 5.5209 4.8229 0.3607 39 1 7.1247 4.0210 0.7917 40 1 7.8042 4.1466 -3.0899 41 1 10.2084 2.8903 -2.3030 42 1 9.3636 1.8193 -3.4465 43 1 12.1742 3.7840 -4.1516 44 1 11.5286 2.1781 -4.6187 45 1 11.9600 4.6355 -6.3097 46 1 11.9929 2.9156 -6.7888 47 1 12.5832 4.6105 -9.2693 48 1 8.8955 2.3688 -5.6253 49 1 8.2774 4.0486 -5.5935 50 1 4.0207 0.3797 0.0076 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028855607.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:58:24 Heat of formation + Delta-G solvation = -1.497958 kcal Electronic energy + Delta-G solvation = -28617.255299 eV Core-core repulsion = 24611.080952 eV Total energy + Delta-G solvation = -4006.174347 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.71471 -39.93999 -38.39364 -37.61073 -36.12210 -34.60705 -32.49806 -31.46191 -30.29772 -29.79009 -28.36198 -27.71918 -25.91426 -24.55187 -23.84336 -23.06361 -22.65788 -20.79330 -20.40063 -19.98308 -19.50324 -18.20110 -17.42085 -16.76355 -16.60028 -16.22041 -16.11670 -16.05551 -15.38577 -15.02027 -14.82328 -14.58242 -14.16348 -13.97339 -13.73604 -13.52822 -13.18551 -13.15017 -12.83650 -12.59016 -12.34747 -12.04579 -12.00861 -11.98142 -11.79227 -11.65191 -11.39121 -11.13153 -10.91107 -10.86289 -10.81665 -10.77823 -10.39843 -10.13959 -10.00018 -9.88791 -9.73166 -9.65556 -9.03026 -8.94926 -8.60788 -8.52476 -6.83378 -5.71667 -3.05073 0.90974 1.11635 2.46883 2.86980 3.11643 3.35883 3.39164 3.44596 3.47157 3.79041 4.26767 4.43082 4.47774 4.48975 4.58995 4.66834 4.69619 4.73571 4.75257 4.94946 4.97757 5.06080 5.12820 5.17764 5.23394 5.36489 5.38972 5.43114 5.55042 5.63881 5.65166 5.70536 5.81205 5.90136 5.95255 6.05031 6.06685 6.09307 6.28916 6.35264 6.41283 6.45285 6.50472 6.53872 6.69225 6.91556 7.04033 7.55702 7.56423 7.63338 7.82687 8.24963 8.25790 9.21908 9.82318 10.48479 11.40154 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.013573 B = 0.001820 C = 0.001695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2062.470334 B =15382.758270 C =16519.934998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.318 6.318 3 C 0.129 3.871 4 C -0.213 4.213 5 C -0.077 4.077 6 C -0.157 4.157 7 C -0.012 4.012 8 C -0.086 4.086 9 H 0.129 0.871 10 C -0.142 4.142 11 C -0.175 4.175 12 H 0.127 0.873 13 C 0.540 3.460 14 O -0.545 6.545 15 N -0.719 5.719 16 C 0.132 3.868 17 C -0.117 4.117 18 H 0.080 0.920 19 C -0.135 4.135 20 C 0.177 3.823 21 N -0.607 5.607 22 C -0.228 4.228 23 H 0.078 0.922 24 C -0.010 4.010 25 N -0.921 5.921 26 Si 0.912 3.088 27 H -0.280 1.280 28 H -0.291 1.291 29 H -0.291 1.291 30 C 0.142 3.858 31 C -0.141 4.141 32 H 0.055 0.945 33 H 0.055 0.945 34 H 0.100 0.900 35 H 0.127 0.873 36 H 0.125 0.875 37 H 0.127 0.873 38 H 0.109 0.891 39 H 0.106 0.894 40 H 0.403 0.597 41 H 0.065 0.935 42 H 0.068 0.932 43 H 0.061 0.939 44 H 0.059 0.941 45 H 0.046 0.954 46 H 0.043 0.957 47 H 0.251 0.749 48 H 0.019 0.981 49 H 0.035 0.965 50 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.163 -1.740 21.708 29.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.231 6.231 3 C 0.084 3.916 4 C -0.232 4.232 5 C -0.095 4.095 6 C -0.175 4.175 7 C -0.012 4.012 8 C -0.104 4.104 9 H 0.147 0.853 10 C -0.179 4.179 11 C -0.196 4.196 12 H 0.145 0.855 13 C 0.326 3.674 14 O -0.423 6.423 15 N -0.369 5.369 16 C 0.009 3.991 17 C -0.137 4.137 18 H 0.098 0.902 19 C -0.174 4.174 20 C 0.052 3.948 21 N -0.333 5.333 22 C -0.356 4.356 23 H 0.096 0.904 24 C -0.206 4.206 25 N -0.569 5.569 26 Si 0.742 3.258 27 H -0.205 1.205 28 H -0.218 1.218 29 H -0.218 1.218 30 C 0.016 3.984 31 C -0.160 4.160 32 H 0.073 0.927 33 H 0.074 0.926 34 H 0.118 0.882 35 H 0.144 0.856 36 H 0.143 0.857 37 H 0.145 0.855 38 H 0.127 0.873 39 H 0.124 0.876 40 H 0.237 0.763 41 H 0.083 0.917 42 H 0.087 0.913 43 H 0.080 0.920 44 H 0.078 0.922 45 H 0.065 0.935 46 H 0.061 0.939 47 H 0.062 0.938 48 H 0.037 0.963 49 H 0.054 0.946 50 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -19.605 -2.576 21.860 29.476 hybrid contribution -0.708 0.792 -1.341 1.710 sum -20.312 -1.785 20.519 28.928 Atomic orbital electron populations 1.23062 0.78332 1.04024 1.01329 1.86088 1.21416 1.26921 1.88665 1.18976 0.92201 0.84208 0.96239 1.21239 1.00014 0.92460 1.09443 1.20897 0.94443 0.97007 0.97170 1.20989 0.93735 0.98186 1.04566 1.18874 0.92998 0.92364 0.96967 1.21052 0.90562 0.97956 1.00863 0.85300 1.23142 1.03180 0.95808 0.95810 1.22368 0.97178 1.06269 0.93767 0.85531 1.19546 0.85072 0.82994 0.79749 1.90693 1.67644 1.26895 1.57035 1.45995 1.22864 1.33671 1.34390 1.21419 0.83444 0.98093 0.96169 1.22613 0.97725 0.99212 0.94150 0.90213 1.22857 0.94416 1.00240 0.99875 1.21147 0.86433 1.00085 0.87093 1.44491 1.01025 1.80020 1.07750 1.19102 0.92337 1.38465 0.85708 0.90438 1.24814 0.95385 1.01987 0.98407 1.69973 0.98998 1.54886 1.33066 0.86042 0.77585 0.77813 0.84310 1.20529 1.21780 1.21757 1.21582 0.93044 0.97040 0.86763 1.20244 0.91290 0.98372 1.06053 0.92670 0.92594 0.88178 0.85552 0.85656 0.85528 0.87277 0.87589 0.76270 0.91664 0.91319 0.92000 0.92203 0.93534 0.93907 0.93810 0.96316 0.94630 0.84913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 9.81 101.05 0.99 1.14 16 2 O -0.32 -3.02 10.50 -19.43 -0.20 -3.23 16 3 C 0.13 1.27 6.69 -39.22 -0.26 1.00 16 4 C -0.21 -1.72 9.04 -39.44 -0.36 -2.08 16 5 C -0.08 -0.58 10.04 -39.61 -0.40 -0.98 16 6 C -0.16 -1.27 9.30 -39.56 -0.37 -1.63 16 7 C -0.01 -0.11 5.61 -104.64 -0.59 -0.70 16 8 C -0.09 -0.83 5.55 -91.77 -0.51 -1.34 16 9 H 0.13 1.41 7.67 -51.93 -0.40 1.01 16 10 C -0.14 -1.12 9.56 -26.73 -0.26 -1.38 16 11 C -0.17 -1.71 5.82 -91.77 -0.53 -2.24 16 12 H 0.13 1.07 8.14 -51.93 -0.42 0.65 16 13 C 0.54 7.13 7.61 -10.99 -0.08 7.04 16 14 O -0.54 -9.15 16.26 5.56 0.09 -9.06 16 15 N -0.72 -9.03 5.50 -60.30 -0.33 -9.36 16 16 C 0.13 1.91 5.13 -4.04 -0.02 1.88 16 17 C -0.12 -1.93 3.05 -88.47 -0.27 -2.20 16 18 H 0.08 1.28 8.14 -51.93 -0.42 0.85 16 19 C -0.13 -2.46 6.42 -24.90 -0.16 -2.62 16 20 C 0.18 4.27 5.37 -3.06 -0.02 4.26 16 21 N -0.61 -15.40 3.39 -170.07 -0.58 -15.98 16 22 C -0.23 -6.35 10.28 -15.06 -0.15 -6.50 16 23 H 0.08 2.09 7.83 -52.49 -0.41 1.68 16 24 C -0.01 -0.28 5.49 -17.43 -0.10 -0.37 16 25 N -0.92 -27.13 10.31 55.49 0.57 -26.56 16 26 Si 0.91 22.12 29.55 -169.99 -5.02 17.10 16 27 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 28 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 29 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 30 C 0.14 2.85 6.65 -2.53 -0.02 2.83 16 31 C -0.14 -1.46 9.68 -39.44 -0.38 -1.84 16 32 H 0.05 0.23 7.67 -51.93 -0.40 -0.17 16 33 H 0.06 0.25 7.66 -51.93 -0.40 -0.14 16 34 H 0.10 0.36 8.14 -51.93 -0.42 -0.07 16 35 H 0.13 0.75 6.30 -52.49 -0.33 0.41 16 36 H 0.13 0.65 8.06 -52.49 -0.42 0.23 16 37 H 0.13 0.79 6.01 -52.49 -0.32 0.47 16 38 H 0.11 0.63 6.17 -51.93 -0.32 0.31 16 39 H 0.11 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.40 4.29 8.47 -40.82 -0.35 3.94 16 41 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 42 H 0.07 1.08 7.96 -51.93 -0.41 0.67 16 43 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 44 H 0.06 1.04 8.04 -51.93 -0.42 0.62 16 45 H 0.05 1.24 7.38 -51.93 -0.38 0.85 16 46 H 0.04 1.15 7.51 -51.93 -0.39 0.76 16 47 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 48 H 0.02 0.39 7.91 -51.93 -0.41 -0.02 16 49 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 50 H 0.13 1.35 8.06 -52.48 -0.42 0.93 16 LS Contribution 405.92 15.07 6.12 6.12 Total: -1.00 -33.93 405.92 -10.71 -44.64 By element: Atomic # 1 Polarization: 9.92 SS G_CDS: -7.87 Total: 2.05 kcal Atomic # 6 Polarization: -2.24 SS G_CDS: -3.48 Total: -5.72 kcal Atomic # 7 Polarization: -51.56 SS G_CDS: -0.34 Total: -51.90 kcal Atomic # 8 Polarization: -12.17 SS G_CDS: -0.11 Total: -12.29 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -33.93 -10.71 -44.64 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028855607.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.144 kcal (2) G-P(sol) polarization free energy of solvation -33.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds