Wall clock time and date at job start Wed Apr 1 2020 02:58:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35903 * 117.00224 * 2 1 4 4 C 1.38755 * 120.05492 * 359.97438 * 3 2 1 5 5 C 1.38116 * 119.94123 * 179.72926 * 4 3 2 6 6 C 1.38287 * 120.06102 * 0.02562 * 5 4 3 7 7 C 1.38241 * 120.10676 * 359.97438 * 6 5 4 8 8 C 1.50705 * 119.97218 * 180.02562 * 7 6 5 9 9 H 1.08991 * 115.55256 * 154.32978 * 8 7 6 10 10 C 1.53003 * 117.49468 * 8.61631 * 8 7 6 11 11 C 1.52997 * 60.00061 * 252.51104 * 10 8 7 12 12 H 1.09005 * 117.49630 * 107.48917 * 11 10 8 13 13 C 1.50697 * 117.52365 * 252.51726 * 11 10 8 14 14 O 1.21282 * 119.99834 * 68.63102 * 13 11 10 15 15 N 1.34778 * 120.00259 * 248.63309 * 13 11 10 16 16 C 1.46500 * 119.99934 * 180.02562 * 15 13 11 17 17 C 1.52997 * 109.47006 * 179.97438 * 16 15 13 18 18 H 1.09006 * 110.88493 * 51.11725 * 17 16 15 19 19 C 1.55159 * 111.00609 * 174.99788 * 17 16 15 20 20 C 1.54316 * 102.94252 * 153.57735 * 19 17 16 21 21 N 1.47028 * 107.27352 * 337.80302 * 20 19 17 22 22 C 1.36927 * 125.65023 * 178.96194 * 21 20 19 23 23 H 1.08002 * 120.00170 * 179.97438 * 22 21 20 24 24 C 1.38820 * 120.00022 * 359.97438 * 22 21 20 25 25 N 1.31610 * 120.00025 * 359.97438 * 24 22 21 26 26 Si 1.86797 * 119.99763 * 179.97438 * 24 22 21 27 27 H 1.48495 * 109.47491 * 0.02562 * 26 24 22 28 28 H 1.48505 * 109.46990 * 120.00358 * 26 24 22 29 29 H 1.48499 * 109.47065 * 239.99697 * 26 24 22 30 30 C 1.47427 * 108.69850 * 358.94768 * 21 20 19 31 31 C 1.38168 * 120.05773 * 359.97438 * 7 6 5 32 32 H 1.09004 * 109.46917 * 300.00870 * 1 2 3 33 33 H 1.08998 * 109.46815 * 60.00240 * 1 2 3 34 34 H 1.08999 * 109.47402 * 180.02562 * 1 2 3 35 35 H 1.08000 * 120.02684 * 359.70397 * 4 3 2 36 36 H 1.08002 * 119.97134 * 180.02562 * 5 4 3 37 37 H 1.08000 * 119.94875 * 179.97438 * 6 5 4 38 38 H 1.08998 * 117.50263 * 0.02562 * 10 8 7 39 39 H 1.09007 * 117.49436 * 145.02309 * 10 8 7 40 40 H 0.96994 * 119.99796 * 359.97438 * 15 13 11 41 41 H 1.08997 * 109.46708 * 299.99688 * 16 15 13 42 42 H 1.08996 * 109.46998 * 59.99870 * 16 15 13 43 43 H 1.08997 * 110.71988 * 271.93954 * 19 17 16 44 44 H 1.08998 * 110.71894 * 35.03526 * 19 17 16 45 45 H 1.08998 * 109.88610 * 97.22950 * 20 19 17 46 46 H 1.09004 * 109.88312 * 218.39411 * 20 19 17 47 47 H 0.97002 * 120.00048 * 179.97438 * 25 24 22 48 48 H 1.08997 * 110.36210 * 265.27926 * 30 21 20 49 49 H 1.08999 * 110.36190 * 142.96405 * 30 21 20 50 50 H 1.08008 * 120.02680 * 180.02562 * 31 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2109 0.0000 4 6 1.2915 2.3753 -0.0005 5 6 1.9210 3.6047 0.0051 6 6 3.3020 3.6757 0.0108 7 6 4.0560 2.5170 0.0113 8 6 5.5609 2.5980 0.0181 9 1 6.0761 1.7372 0.4443 10 6 6.1932 3.9754 0.2274 11 6 6.2349 3.3163 -1.1526 12 1 5.5899 3.7302 -1.9278 13 6 7.5603 2.7796 -1.6283 14 8 8.0529 1.8129 -1.0861 15 7 8.1984 3.3737 -2.6561 16 6 9.4866 2.8515 -3.1188 17 6 9.9909 3.7005 -4.2874 18 1 9.9735 4.7605 -4.0337 19 6 11.4118 3.2566 -4.7249 20 6 11.4614 3.6714 -6.2105 21 7 10.0725 3.7758 -6.6812 22 6 9.6825 4.1404 -7.9421 23 1 8.6324 4.1869 -8.1903 24 6 10.6368 4.4504 -8.9014 25 7 11.9164 4.3942 -8.5989 26 14 10.1046 4.9472 -10.6217 27 1 8.6221 4.9334 -10.7047 28 1 10.6039 6.3138 -10.9190 29 1 10.6651 3.9899 -11.6090 30 6 9.1693 3.4224 -5.5709 31 6 3.4311 1.2847 0.0068 32 1 -0.3633 0.5140 0.8899 33 1 -0.3633 0.5138 -0.8900 34 1 -0.3634 -1.0276 0.0005 35 1 0.2129 2.3204 -0.0058 36 1 1.3342 4.5113 0.0051 37 1 3.7924 4.6380 0.0148 38 1 5.5209 4.8229 0.3607 39 1 7.1247 4.0210 0.7917 40 1 7.8042 4.1466 -3.0899 41 1 10.2084 2.8903 -2.3030 42 1 9.3636 1.8193 -3.4465 43 1 12.1742 3.7840 -4.1516 44 1 11.5286 2.1781 -4.6187 45 1 11.9600 4.6355 -6.3097 46 1 11.9929 2.9156 -6.7888 47 1 12.5832 4.6105 -9.2693 48 1 8.8955 2.3688 -5.6253 49 1 8.2774 4.0486 -5.5935 50 1 4.0207 0.3797 0.0076 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028855607.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:58:23 Heat of formation + Delta-G solvation = -22.104127 kcal Electronic energy + Delta-G solvation = -28618.148849 eV Core-core repulsion = 24611.080952 eV Total energy + Delta-G solvation = -4007.067897 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.44335 -40.81926 -39.47967 -38.83392 -36.89355 -35.97256 -34.30049 -32.10224 -31.65944 -30.84419 -29.94623 -28.18493 -27.49088 -26.03387 -24.54346 -24.14299 -23.40261 -22.05506 -21.53715 -21.33566 -20.70738 -18.94746 -18.78323 -18.18753 -17.32687 -17.16831 -16.91408 -16.68575 -16.63930 -16.43380 -16.02210 -15.79491 -15.50750 -15.00604 -14.69038 -14.56809 -14.33884 -13.99422 -13.82864 -13.76516 -13.61067 -13.44086 -13.24445 -13.04154 -12.77096 -12.66465 -12.62041 -12.53119 -12.23525 -11.98071 -11.89290 -11.85416 -11.72449 -11.56516 -11.51831 -11.47579 -11.45751 -10.88457 -10.71607 -10.07391 -9.68700 -9.14417 -8.89741 -7.85090 -5.20528 0.27405 0.48916 1.45833 1.46852 1.50426 1.57166 2.13779 2.36157 2.49393 2.64740 3.07999 3.33223 3.54973 3.61490 3.71264 3.79750 3.87462 3.91963 4.00915 4.03357 4.06547 4.16271 4.21827 4.29755 4.38412 4.38870 4.45269 4.55299 4.62169 4.70013 4.72093 4.75994 4.81857 4.82844 4.92034 5.00162 5.03129 5.06298 5.08243 5.13280 5.34556 5.35738 5.46008 5.49317 5.50818 5.65482 5.68002 5.78307 5.83830 6.20267 6.45954 6.56903 7.10574 7.24441 7.78212 8.42681 9.25611 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.013573 B = 0.001820 C = 0.001695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2062.470334 B =15382.758270 C =16519.934998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.343 6.343 3 C 0.113 3.887 4 C -0.215 4.215 5 C -0.076 4.076 6 C -0.158 4.158 7 C -0.019 4.019 8 C -0.095 4.095 9 H 0.106 0.894 10 C -0.118 4.118 11 C -0.178 4.178 12 H 0.146 0.854 13 C 0.538 3.462 14 O -0.587 6.587 15 N -0.712 5.712 16 C 0.144 3.856 17 C -0.093 4.093 18 H 0.093 0.907 19 C -0.123 4.123 20 C 0.183 3.817 21 N -0.629 5.629 22 C -0.240 4.240 23 H 0.084 0.916 24 C -0.070 4.070 25 N -0.952 5.952 26 Si 0.979 3.021 27 H -0.264 1.264 28 H -0.291 1.291 29 H -0.295 1.295 30 C 0.137 3.863 31 C -0.169 4.169 32 H 0.067 0.933 33 H 0.064 0.936 34 H 0.115 0.885 35 H 0.148 0.852 36 H 0.155 0.845 37 H 0.151 0.849 38 H 0.140 0.860 39 H 0.104 0.896 40 H 0.415 0.585 41 H 0.074 0.926 42 H 0.055 0.945 43 H 0.086 0.914 44 H 0.069 0.931 45 H 0.014 0.986 46 H 0.002 0.998 47 H 0.246 0.754 48 H 0.015 0.985 49 H 0.050 0.950 50 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.689 0.208 22.830 32.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.257 6.257 3 C 0.068 3.932 4 C -0.234 4.234 5 C -0.094 4.094 6 C -0.175 4.175 7 C -0.019 4.019 8 C -0.114 4.114 9 H 0.124 0.876 10 C -0.155 4.155 11 C -0.199 4.199 12 H 0.164 0.836 13 C 0.326 3.674 14 O -0.468 6.468 15 N -0.362 5.362 16 C 0.020 3.980 17 C -0.113 4.113 18 H 0.111 0.889 19 C -0.162 4.162 20 C 0.058 3.942 21 N -0.355 5.355 22 C -0.369 4.369 23 H 0.101 0.899 24 C -0.263 4.263 25 N -0.601 5.601 26 Si 0.807 3.193 27 H -0.188 1.188 28 H -0.218 1.218 29 H -0.222 1.222 30 C 0.012 3.988 31 C -0.188 4.188 32 H 0.086 0.914 33 H 0.083 0.917 34 H 0.133 0.867 35 H 0.166 0.834 36 H 0.173 0.827 37 H 0.169 0.831 38 H 0.157 0.843 39 H 0.122 0.878 40 H 0.251 0.749 41 H 0.092 0.908 42 H 0.073 0.927 43 H 0.105 0.895 44 H 0.087 0.913 45 H 0.032 0.968 46 H 0.021 0.979 47 H 0.055 0.945 48 H 0.033 0.967 49 H 0.068 0.932 50 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -22.177 -0.617 22.999 31.956 hybrid contribution 0.019 0.119 -1.666 1.670 sum -22.159 -0.498 21.334 30.763 Atomic orbital electron populations 1.23330 0.76383 1.05448 1.02338 1.86050 1.23580 1.27311 1.88794 1.19162 0.92215 0.85025 0.96810 1.21539 1.01122 0.92079 1.08636 1.21298 0.94559 0.97812 0.95749 1.21270 0.94110 0.98424 1.03729 1.18901 0.92804 0.92652 0.97519 1.20948 0.90829 0.98451 1.01181 0.87629 1.23287 1.03226 0.95455 0.93498 1.22349 0.95465 1.07076 0.94962 0.83628 1.20107 0.85903 0.82266 0.79130 1.90680 1.68936 1.28777 1.58360 1.45892 1.22194 1.33891 1.34262 1.21151 0.84598 0.96838 0.95436 1.22407 0.95551 1.00267 0.93076 0.88885 1.22723 0.96501 1.01161 0.95835 1.20918 0.85628 0.97233 0.90450 1.44820 1.02440 1.79853 1.08415 1.19513 0.92702 1.37634 0.87093 0.89854 1.25683 0.95526 1.02755 1.02315 1.70198 0.99934 1.56117 1.33885 0.84998 0.77938 0.76909 0.79419 1.18843 1.21806 1.22204 1.21765 0.93322 0.96851 0.86822 1.20340 0.92010 0.98520 1.07954 0.91404 0.91713 0.86720 0.83447 0.82741 0.83141 0.84256 0.87763 0.74856 0.90773 0.92697 0.89518 0.91278 0.96755 0.97926 0.94466 0.96712 0.93203 0.86508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 9.81 113.37 1.11 1.30 16 2 O -0.34 -6.59 10.50 -92.45 -0.97 -7.56 16 3 C 0.11 2.19 6.69 22.50 0.15 2.34 16 4 C -0.22 -3.06 9.04 22.36 0.20 -2.85 16 5 C -0.08 -0.91 10.04 22.25 0.22 -0.69 16 6 C -0.16 -2.09 9.30 22.28 0.21 -1.88 16 7 C -0.02 -0.34 5.61 -19.88 -0.11 -0.45 16 8 C -0.10 -1.77 5.55 -11.54 -0.06 -1.84 16 9 H 0.11 2.44 7.67 -2.39 -0.02 2.43 16 10 C -0.12 -1.54 9.56 30.59 0.29 -1.25 16 11 C -0.18 -3.13 5.82 -11.54 -0.07 -3.20 16 12 H 0.15 2.01 8.14 -2.38 -0.02 2.00 16 13 C 0.54 13.52 7.61 87.66 0.67 14.19 16 14 O -0.59 -19.68 16.26 -3.04 -0.05 -19.73 16 15 N -0.71 -16.37 5.50 -463.07 -2.55 -18.91 16 16 C 0.14 3.88 5.13 86.38 0.44 4.32 16 17 C -0.09 -2.89 3.05 -9.40 -0.03 -2.92 16 18 H 0.09 2.70 8.14 -2.38 -0.02 2.68 16 19 C -0.12 -4.37 6.42 31.78 0.20 -4.16 16 20 C 0.18 9.03 5.37 86.73 0.47 9.50 16 21 N -0.63 -32.16 3.39 -691.99 -2.35 -34.51 16 22 C -0.24 -13.47 10.28 84.04 0.86 -12.61 16 23 H 0.08 4.44 7.83 -2.91 -0.02 4.42 16 24 C -0.07 -4.01 5.49 84.87 0.47 -3.55 16 25 N -0.95 -57.81 10.31 21.65 0.22 -57.59 16 26 Si 0.98 45.91 29.55 68.60 2.03 47.94 16 27 H -0.26 -11.56 7.11 99.48 0.71 -10.86 16 28 H -0.29 -13.56 7.11 99.48 0.71 -12.86 16 29 H -0.29 -13.92 7.11 99.48 0.71 -13.22 16 30 C 0.14 5.35 6.65 86.85 0.58 5.93 16 31 C -0.17 -3.63 9.68 22.36 0.22 -3.41 16 32 H 0.07 0.46 7.67 -2.39 -0.02 0.44 16 33 H 0.06 0.49 7.66 -2.39 -0.02 0.47 16 34 H 0.11 0.70 8.14 -2.39 -0.02 0.68 16 35 H 0.15 1.35 6.30 -2.91 -0.02 1.33 16 36 H 0.15 0.91 8.06 -2.91 -0.02 0.89 16 37 H 0.15 1.19 6.01 -2.91 -0.02 1.17 16 38 H 0.14 0.99 6.17 -2.39 -0.01 0.97 16 39 H 0.10 1.45 8.14 -2.38 -0.02 1.43 16 40 H 0.41 7.62 8.47 -92.71 -0.79 6.83 16 41 H 0.07 1.93 8.14 -2.39 -0.02 1.92 16 42 H 0.05 1.67 7.96 -2.39 -0.02 1.65 16 43 H 0.09 2.66 8.14 -2.39 -0.02 2.64 16 44 H 0.07 2.33 8.04 -2.39 -0.02 2.31 16 45 H 0.01 0.78 7.38 -2.39 -0.02 0.77 16 46 H 0.00 0.14 7.51 -2.38 -0.02 0.12 16 47 H 0.25 14.50 8.31 -92.71 -0.77 13.73 16 48 H 0.02 0.61 7.91 -2.39 -0.02 0.59 16 49 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 50 H 0.12 2.69 8.06 -2.91 -0.02 2.66 16 Total: -1.00 -76.94 405.92 2.32 -74.62 By element: Atomic # 1 Polarization: 16.80 SS G_CDS: 0.16 Total: 16.96 kcal Atomic # 6 Polarization: -7.05 SS G_CDS: 5.82 Total: -1.23 kcal Atomic # 7 Polarization: -106.33 SS G_CDS: -4.67 Total: -111.01 kcal Atomic # 8 Polarization: -26.27 SS G_CDS: -1.02 Total: -27.29 kcal Atomic # 14 Polarization: 45.91 SS G_CDS: 2.03 Total: 47.94 kcal Total: -76.94 2.32 -74.62 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028855607.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.519 kcal (2) G-P(sol) polarization free energy of solvation -76.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.623 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds