Wall clock time and date at job start Wed Apr 1 2020 03:07:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35643 * 117.00403 * 2 1 4 4 C 1.38716 * 120.14862 * 0.25244 * 3 2 1 5 5 C 1.38058 * 120.08353 * 180.27167 * 4 3 2 6 6 C 1.38546 * 120.38779 * 359.75003 * 5 4 3 7 7 C 1.37780 * 120.30557 * 359.97438 * 6 5 4 8 8 C 1.39708 * 119.90729 * 0.02562 * 7 6 5 9 9 C 1.47539 * 120.19156 * 179.97438 * 8 7 6 10 10 O 1.21586 * 119.99862 * 217.23285 * 9 8 7 11 11 N 1.34770 * 119.99878 * 37.50658 * 9 8 7 12 12 C 1.47486 * 125.66672 * 4.67388 * 11 9 8 13 13 C 1.55280 * 104.78167 * 155.88030 * 12 11 9 14 14 C 1.54483 * 101.41958 * 36.67291 * 13 12 11 15 15 C 1.47185 * 125.66087 * 184.97645 * 11 9 8 16 16 C 1.52234 * 110.29365 * 206.46135 * 14 13 12 17 17 C 1.53171 * 109.65213 * 178.00569 * 16 14 13 18 18 C 1.53185 * 109.27066 * 60.17939 * 17 16 14 19 19 N 1.46929 * 108.93328 * 304.78239 * 18 17 16 20 20 C 1.36939 * 120.69951 * 234.13902 * 19 18 17 21 21 H 1.08003 * 119.99852 * 155.01257 * 20 19 18 22 22 C 1.38808 * 119.99940 * 335.00704 * 20 19 18 23 23 N 1.31622 * 119.99476 * 157.60626 * 22 20 19 24 24 Si 1.86799 * 120.00376 * 337.60758 * 22 20 19 25 25 H 1.48500 * 109.46921 * 91.35866 * 24 22 20 26 26 H 1.48489 * 109.47312 * 211.36078 * 24 22 20 27 27 H 1.48502 * 109.46966 * 331.36139 * 24 22 20 28 28 C 1.47080 * 118.60089 * 54.15322 * 19 18 17 29 29 H 1.08996 * 109.46875 * 60.00036 * 1 2 3 30 30 H 1.09002 * 109.47028 * 180.02562 * 1 2 3 31 31 H 1.08991 * 109.46963 * 299.99850 * 1 2 3 32 32 H 1.07998 * 119.95886 * 0.02662 * 4 3 2 33 33 H 1.07999 * 119.80242 * 179.76762 * 5 4 3 34 34 H 1.08002 * 119.84391 * 179.97438 * 6 5 4 35 35 H 1.08005 * 120.04710 * 180.02562 * 7 6 5 36 36 H 1.08994 * 110.35336 * 274.84959 * 12 11 9 37 37 H 1.09004 * 110.35159 * 37.12877 * 12 11 9 38 38 H 1.09001 * 111.23382 * 278.57911 * 13 12 11 39 39 H 1.08999 * 110.90132 * 154.62702 * 13 12 11 40 40 H 1.08993 * 109.91101 * 300.90577 * 15 11 9 41 41 H 1.09006 * 109.90574 * 62.17072 * 15 11 9 42 42 H 1.09003 * 109.44358 * 298.06157 * 16 14 13 43 43 H 1.09002 * 109.44419 * 57.98773 * 16 14 13 44 44 H 1.08997 * 109.50736 * 180.12199 * 17 16 14 45 45 H 1.08999 * 109.50038 * 300.24577 * 17 16 14 46 46 H 1.09004 * 109.56518 * 64.61650 * 18 17 16 47 47 H 1.09004 * 109.56329 * 184.94599 * 18 17 16 48 48 H 0.97010 * 119.99578 * 179.97438 * 23 22 20 49 49 H 1.08998 * 109.58088 * 187.75577 * 28 19 18 50 50 H 1.08994 * 109.57655 * 67.35664 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2085 0.0000 4 6 1.2925 2.3739 0.0053 5 6 1.9207 3.6033 -0.0004 6 6 3.3039 3.6835 -0.0062 7 6 4.0668 2.5362 -0.0058 8 6 3.4442 1.2856 -0.0001 9 6 4.2551 0.0530 -0.0002 10 8 3.8863 -0.9172 -0.6333 11 7 5.4018 0.0008 0.7060 12 6 5.9128 1.0603 1.5957 13 6 6.8426 0.3225 2.5969 14 6 7.4837 -0.7485 1.6868 15 6 6.3552 -1.1205 0.7125 16 6 7.9046 -1.9578 2.5102 17 6 8.4923 -3.0299 1.5875 18 6 9.7155 -2.4587 0.8636 19 7 9.3235 -1.2273 0.1643 20 6 9.5620 -1.0783 -1.1759 21 1 8.9522 -0.4061 -1.7614 22 6 10.5873 -1.7912 -1.7819 23 7 10.5599 -2.0086 -3.0797 24 14 12.0060 -2.4419 -0.7556 25 1 11.6937 -3.8192 -0.2965 26 1 13.2427 -2.4625 -1.5771 27 1 12.2091 -1.5614 0.4229 28 6 8.6700 -0.1580 0.9342 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8899 32 1 0.2139 2.3195 0.0098 33 1 1.3305 4.5077 0.0000 34 1 3.7862 4.6498 -0.0110 35 1 5.1448 2.6036 -0.0099 36 1 6.4763 1.7970 1.0231 37 1 5.0899 1.5397 2.1259 38 1 6.2695 -0.1398 3.4006 39 1 7.5981 0.9988 2.9967 40 1 5.8572 -2.0291 1.0507 41 1 6.7620 -1.2676 -0.2880 42 1 8.6556 -1.6561 3.2403 43 1 7.0362 -2.3633 3.0295 44 1 8.7908 -3.8954 2.1791 45 1 7.7431 -3.3300 0.8549 46 1 10.4969 -2.2332 1.5894 47 1 10.0851 -3.1866 0.1413 48 1 11.2767 -2.5065 -3.5033 49 1 8.3212 0.6201 0.2553 50 1 9.3792 0.2659 1.6451 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001040501518.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:07:11 Heat of formation + Delta-G solvation = -7.594884 kcal Electronic energy + Delta-G solvation = -31442.924499 eV Core-core repulsion = 27436.485770 eV Total energy + Delta-G solvation = -4006.438729 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -40.78500 -39.86723 -38.20308 -37.38536 -35.92897 -33.20336 -31.86286 -30.96669 -30.86106 -30.34053 -28.95689 -27.57425 -26.12412 -25.34899 -24.06062 -22.78045 -22.24844 -21.90098 -20.97220 -19.83790 -18.28822 -18.04407 -17.07307 -16.69020 -16.40479 -16.11242 -15.76789 -15.41513 -15.31416 -14.93208 -14.46755 -14.12950 -13.93780 -13.76531 -13.62531 -13.44253 -13.15192 -12.97572 -12.84750 -12.62897 -12.39729 -12.22467 -12.10129 -11.91846 -11.76841 -11.58369 -11.40441 -11.33130 -11.28150 -11.09950 -10.76236 -10.47765 -10.37117 -10.02192 -9.83017 -9.62576 -9.58616 -9.33681 -9.19569 -8.57125 -8.46498 -8.27313 -6.98568 -5.90900 -3.24616 0.80880 1.19508 2.94480 3.07447 3.18911 3.34438 3.50742 3.53471 3.66871 4.41829 4.55653 4.56051 4.62374 4.71375 4.83329 4.86696 4.92406 4.99725 5.04583 5.11334 5.13692 5.26811 5.30290 5.35995 5.42287 5.49001 5.55108 5.59461 5.65585 5.75358 5.89639 5.94288 5.97102 6.05344 6.05814 6.12366 6.22317 6.26660 6.32411 6.38387 6.46573 6.48804 6.50619 6.60021 6.69133 6.73405 6.76472 6.96440 7.17549 7.78181 7.96467 8.35395 8.45616 8.96355 9.75597 10.11814 11.24850 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.016542 B = 0.003010 C = 0.002962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1692.272601 B = 9298.645408 C = 9450.766449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.292 6.292 3 C 0.176 3.824 4 C -0.220 4.220 5 C -0.061 4.061 6 C -0.166 4.166 7 C -0.049 4.049 8 C -0.158 4.158 9 C 0.575 3.425 10 O -0.522 6.522 11 N -0.612 5.612 12 C 0.099 3.901 13 C -0.124 4.124 14 C -0.085 4.085 15 C 0.127 3.873 16 C -0.092 4.092 17 C -0.139 4.139 18 C 0.123 3.877 19 N -0.603 5.603 20 C -0.258 4.258 21 H 0.085 0.915 22 C 0.023 3.977 23 N -0.906 5.906 24 Si 0.882 3.118 25 H -0.289 1.289 26 H -0.305 1.305 27 H -0.272 1.272 28 C 0.165 3.835 29 H 0.056 0.944 30 H 0.101 0.899 31 H 0.054 0.946 32 H 0.132 0.868 33 H 0.127 0.873 34 H 0.130 0.870 35 H 0.139 0.861 36 H 0.071 0.929 37 H 0.072 0.928 38 H 0.073 0.927 39 H 0.084 0.916 40 H 0.060 0.940 41 H 0.089 0.911 42 H 0.061 0.939 43 H 0.054 0.946 44 H 0.054 0.946 45 H 0.066 0.934 46 H 0.024 0.976 47 H 0.073 0.927 48 H 0.262 0.738 49 H 0.063 0.937 50 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.707 10.716 13.257 24.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.203 6.203 3 C 0.129 3.871 4 C -0.239 4.239 5 C -0.079 4.079 6 C -0.184 4.184 7 C -0.068 4.068 8 C -0.161 4.161 9 C 0.363 3.637 10 O -0.398 6.398 11 N -0.346 5.346 12 C -0.024 4.024 13 C -0.163 4.163 14 C -0.088 4.088 15 C 0.005 3.995 16 C -0.130 4.130 17 C -0.178 4.178 18 C -0.002 4.002 19 N -0.326 5.326 20 C -0.386 4.386 21 H 0.103 0.897 22 C -0.176 4.176 23 N -0.549 5.549 24 Si 0.713 3.287 25 H -0.217 1.217 26 H -0.234 1.234 27 H -0.197 1.197 28 C 0.039 3.961 29 H 0.075 0.925 30 H 0.120 0.880 31 H 0.073 0.927 32 H 0.150 0.850 33 H 0.145 0.855 34 H 0.148 0.852 35 H 0.157 0.843 36 H 0.089 0.911 37 H 0.091 0.909 38 H 0.092 0.908 39 H 0.102 0.898 40 H 0.079 0.921 41 H 0.107 0.893 42 H 0.079 0.921 43 H 0.072 0.928 44 H 0.073 0.927 45 H 0.085 0.915 46 H 0.042 0.958 47 H 0.091 0.909 48 H 0.072 0.928 49 H 0.081 0.919 50 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -17.810 9.915 12.677 24.004 hybrid contribution 0.616 -0.204 0.453 0.791 sum -17.194 9.711 13.129 23.713 Atomic orbital electron populations 1.23126 0.78531 1.04278 1.01115 1.86273 1.21032 1.25930 1.87085 1.18999 0.90870 0.84786 0.92480 1.21194 1.00147 0.92061 1.10475 1.21081 0.94760 0.96936 0.95105 1.21003 0.93766 0.98491 1.05134 1.21396 1.00677 0.90452 0.94247 1.19313 0.90728 0.94379 1.11717 1.17588 0.79612 0.87131 0.79322 1.90816 1.69555 1.36616 1.42848 1.48435 1.21240 1.19620 1.45340 1.22535 0.97321 0.90934 0.91596 1.22843 0.98410 0.97990 0.97012 1.21609 0.96252 0.95853 0.95064 1.21980 0.87692 0.88098 1.01731 1.21271 0.99827 0.94845 0.97085 1.22073 1.00022 0.97077 0.98618 1.21359 0.94148 0.89402 0.95306 1.44366 1.69674 1.11980 1.06601 1.18885 1.12004 1.26140 0.81597 0.89729 1.25204 0.98219 0.98982 0.95163 1.69875 1.33394 1.41885 1.09698 0.86991 0.83305 0.78339 0.80035 1.21660 1.23361 1.19735 1.20795 0.90896 0.90768 0.93689 0.92505 0.88028 0.92713 0.84995 0.85484 0.85236 0.84336 0.91120 0.90930 0.90823 0.89762 0.92130 0.89281 0.92071 0.92760 0.92698 0.91520 0.95818 0.90860 0.92816 0.91896 0.95610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.81 101.05 0.99 1.20 16 2 O -0.29 -4.13 9.18 -35.74 -0.33 -4.46 16 3 C 0.18 2.36 6.67 -38.69 -0.26 2.10 16 4 C -0.22 -2.16 9.03 -39.47 -0.36 -2.52 16 5 C -0.06 -0.52 10.03 -39.53 -0.40 -0.91 16 6 C -0.17 -1.52 10.02 -39.64 -0.40 -1.91 16 7 C -0.05 -0.57 8.18 -39.20 -0.32 -0.89 16 8 C -0.16 -2.29 5.40 -104.84 -0.57 -2.86 16 9 C 0.58 10.37 7.34 -12.47 -0.09 10.28 16 10 O -0.52 -11.60 16.35 -11.82 -0.19 -11.79 16 11 N -0.61 -9.91 3.33 -171.75 -0.57 -10.49 16 12 C 0.10 1.19 4.94 -2.29 -0.01 1.18 16 13 C -0.12 -1.45 6.01 -24.74 -0.15 -1.60 16 14 C -0.09 -1.32 0.54 -154.09 -0.08 -1.41 16 15 C 0.13 2.27 5.06 -3.33 -0.02 2.25 16 16 C -0.09 -1.38 4.52 -27.03 -0.12 -1.50 16 17 C -0.14 -2.45 5.92 -26.55 -0.16 -2.60 16 18 C 0.12 2.66 4.20 -3.71 -0.02 2.65 16 19 N -0.60 -13.99 2.42 -172.68 -0.42 -14.40 16 20 C -0.26 -7.18 10.06 -15.06 -0.15 -7.33 16 21 H 0.09 2.54 8.04 -52.48 -0.42 2.12 16 22 C 0.02 0.67 5.22 -17.43 -0.09 0.58 16 23 N -0.91 -28.12 13.97 55.49 0.78 -27.34 16 24 Si 0.88 22.46 24.36 -169.99 -4.14 18.32 16 25 H -0.29 -7.10 6.51 56.52 0.37 -6.74 16 26 H -0.31 -7.94 7.11 56.52 0.40 -7.54 16 27 H -0.27 -6.76 6.79 56.52 0.38 -6.38 16 28 C 0.16 3.07 4.97 -4.03 -0.02 3.05 16 29 H 0.06 0.40 7.67 -51.93 -0.40 0.01 16 30 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.05 0.35 7.65 -51.93 -0.40 -0.04 16 32 H 0.13 0.95 6.30 -52.49 -0.33 0.62 16 33 H 0.13 0.71 8.06 -52.49 -0.42 0.29 16 34 H 0.13 0.86 8.06 -52.49 -0.42 0.44 16 35 H 0.14 1.47 5.84 -52.48 -0.31 1.17 16 36 H 0.07 0.79 6.69 -51.93 -0.35 0.44 16 37 H 0.07 0.75 7.27 -51.93 -0.38 0.37 16 38 H 0.07 0.80 8.02 -51.93 -0.42 0.38 16 39 H 0.08 0.85 7.98 -51.93 -0.41 0.43 16 40 H 0.06 1.11 7.61 -51.93 -0.40 0.72 16 41 H 0.09 1.97 7.55 -51.93 -0.39 1.58 16 42 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 43 H 0.05 0.73 8.11 -51.93 -0.42 0.31 16 44 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 45 H 0.07 1.27 7.28 -51.93 -0.38 0.89 16 46 H 0.02 0.50 7.26 -51.93 -0.38 0.13 16 47 H 0.07 1.77 4.20 -51.93 -0.22 1.55 16 48 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 49 H 0.06 1.20 7.46 -51.93 -0.39 0.81 16 50 H 0.03 0.46 8.11 -51.93 -0.42 0.04 16 LS Contribution 379.83 15.07 5.72 5.72 Total: -1.00 -35.47 379.83 -9.07 -44.54 By element: Atomic # 1 Polarization: 7.85 SS G_CDS: -7.70 Total: 0.15 kcal Atomic # 6 Polarization: 1.96 SS G_CDS: -2.21 Total: -0.25 kcal Atomic # 7 Polarization: -52.02 SS G_CDS: -0.22 Total: -52.24 kcal Atomic # 8 Polarization: -15.73 SS G_CDS: -0.52 Total: -16.25 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -4.14 Total: 18.32 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -35.47 -9.07 -44.54 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040501518.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.945 kcal (2) G-P(sol) polarization free energy of solvation -35.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds