Wall clock time and date at job start Wed Apr 1 2020 03:07:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35643 * 117.00403 * 2 1 4 4 C 1.38716 * 120.14862 * 0.25244 * 3 2 1 5 5 C 1.38058 * 120.08353 * 180.27167 * 4 3 2 6 6 C 1.38546 * 120.38779 * 359.75003 * 5 4 3 7 7 C 1.37780 * 120.30557 * 359.97438 * 6 5 4 8 8 C 1.39708 * 119.90729 * 0.02562 * 7 6 5 9 9 C 1.47539 * 120.19156 * 179.97438 * 8 7 6 10 10 O 1.21586 * 119.99862 * 217.23285 * 9 8 7 11 11 N 1.34770 * 119.99878 * 37.50658 * 9 8 7 12 12 C 1.47486 * 125.66672 * 4.67388 * 11 9 8 13 13 C 1.55280 * 104.78167 * 155.88030 * 12 11 9 14 14 C 1.54483 * 101.41958 * 36.67291 * 13 12 11 15 15 C 1.47185 * 125.66087 * 184.97645 * 11 9 8 16 16 C 1.52234 * 110.29365 * 206.46135 * 14 13 12 17 17 C 1.53171 * 109.65213 * 178.00569 * 16 14 13 18 18 C 1.53185 * 109.27066 * 60.17939 * 17 16 14 19 19 N 1.46929 * 108.93328 * 304.78239 * 18 17 16 20 20 C 1.36939 * 120.69951 * 234.13902 * 19 18 17 21 21 H 1.08003 * 119.99852 * 155.01257 * 20 19 18 22 22 C 1.38808 * 119.99940 * 335.00704 * 20 19 18 23 23 N 1.31622 * 119.99476 * 157.60626 * 22 20 19 24 24 Si 1.86799 * 120.00376 * 337.60758 * 22 20 19 25 25 H 1.48500 * 109.46921 * 91.35866 * 24 22 20 26 26 H 1.48489 * 109.47312 * 211.36078 * 24 22 20 27 27 H 1.48502 * 109.46966 * 331.36139 * 24 22 20 28 28 C 1.47080 * 118.60089 * 54.15322 * 19 18 17 29 29 H 1.08996 * 109.46875 * 60.00036 * 1 2 3 30 30 H 1.09002 * 109.47028 * 180.02562 * 1 2 3 31 31 H 1.08991 * 109.46963 * 299.99850 * 1 2 3 32 32 H 1.07998 * 119.95886 * 0.02662 * 4 3 2 33 33 H 1.07999 * 119.80242 * 179.76762 * 5 4 3 34 34 H 1.08002 * 119.84391 * 179.97438 * 6 5 4 35 35 H 1.08005 * 120.04710 * 180.02562 * 7 6 5 36 36 H 1.08994 * 110.35336 * 274.84959 * 12 11 9 37 37 H 1.09004 * 110.35159 * 37.12877 * 12 11 9 38 38 H 1.09001 * 111.23382 * 278.57911 * 13 12 11 39 39 H 1.08999 * 110.90132 * 154.62702 * 13 12 11 40 40 H 1.08993 * 109.91101 * 300.90577 * 15 11 9 41 41 H 1.09006 * 109.90574 * 62.17072 * 15 11 9 42 42 H 1.09003 * 109.44358 * 298.06157 * 16 14 13 43 43 H 1.09002 * 109.44419 * 57.98773 * 16 14 13 44 44 H 1.08997 * 109.50736 * 180.12199 * 17 16 14 45 45 H 1.08999 * 109.50038 * 300.24577 * 17 16 14 46 46 H 1.09004 * 109.56518 * 64.61650 * 18 17 16 47 47 H 1.09004 * 109.56329 * 184.94599 * 18 17 16 48 48 H 0.97010 * 119.99578 * 179.97438 * 23 22 20 49 49 H 1.08998 * 109.58088 * 187.75577 * 28 19 18 50 50 H 1.08994 * 109.57655 * 67.35664 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2085 0.0000 4 6 1.2925 2.3739 0.0053 5 6 1.9207 3.6033 -0.0004 6 6 3.3039 3.6835 -0.0062 7 6 4.0668 2.5362 -0.0058 8 6 3.4442 1.2856 -0.0001 9 6 4.2551 0.0530 -0.0002 10 8 3.8863 -0.9172 -0.6333 11 7 5.4018 0.0008 0.7060 12 6 5.9128 1.0603 1.5957 13 6 6.8426 0.3225 2.5969 14 6 7.4837 -0.7485 1.6868 15 6 6.3552 -1.1205 0.7125 16 6 7.9046 -1.9578 2.5102 17 6 8.4923 -3.0299 1.5875 18 6 9.7155 -2.4587 0.8636 19 7 9.3235 -1.2273 0.1643 20 6 9.5620 -1.0783 -1.1759 21 1 8.9522 -0.4061 -1.7614 22 6 10.5873 -1.7912 -1.7819 23 7 10.5599 -2.0086 -3.0797 24 14 12.0060 -2.4419 -0.7556 25 1 11.6937 -3.8192 -0.2965 26 1 13.2427 -2.4625 -1.5771 27 1 12.2091 -1.5614 0.4229 28 6 8.6700 -0.1580 0.9342 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8899 32 1 0.2139 2.3195 0.0098 33 1 1.3305 4.5077 0.0000 34 1 3.7862 4.6498 -0.0110 35 1 5.1448 2.6036 -0.0099 36 1 6.4763 1.7970 1.0231 37 1 5.0899 1.5397 2.1259 38 1 6.2695 -0.1398 3.4006 39 1 7.5981 0.9988 2.9967 40 1 5.8572 -2.0291 1.0507 41 1 6.7620 -1.2676 -0.2880 42 1 8.6556 -1.6561 3.2403 43 1 7.0362 -2.3633 3.0295 44 1 8.7908 -3.8954 2.1791 45 1 7.7431 -3.3300 0.8549 46 1 10.4969 -2.2332 1.5894 47 1 10.0851 -3.1866 0.1413 48 1 11.2767 -2.5065 -3.5033 49 1 8.3212 0.6201 0.2553 50 1 9.3792 0.2659 1.6451 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001040501518.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:07:10 Heat of formation + Delta-G solvation = -31.194163 kcal Electronic energy + Delta-G solvation = -31443.947841 eV Core-core repulsion = 27436.485770 eV Total energy + Delta-G solvation = -4007.462071 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.88784 -40.97803 -39.53705 -38.28299 -37.46525 -34.92746 -33.26431 -32.66702 -32.05608 -31.14147 -30.18490 -28.35421 -27.58840 -27.06175 -25.22136 -23.91440 -23.59405 -23.08141 -22.38123 -20.93860 -19.70737 -18.94468 -18.68685 -18.17085 -17.37897 -17.31514 -17.26132 -16.67309 -16.43687 -15.94261 -15.71768 -15.50668 -15.23106 -15.13551 -15.06615 -14.61085 -14.53047 -14.41570 -13.91665 -13.89147 -13.66347 -13.56719 -13.35760 -13.20961 -13.02808 -12.81947 -12.69105 -12.49857 -12.45649 -12.12242 -12.06948 -12.00328 -11.78044 -11.70364 -11.54339 -11.20130 -11.07949 -10.93127 -10.61838 -10.05799 -9.68203 -9.24289 -8.94501 -8.15846 -5.44744 -0.07134 0.39646 1.30500 1.40822 1.51326 1.75529 1.97792 2.31112 2.42687 2.76379 3.02302 3.30579 3.43471 3.67120 3.72037 3.78467 3.86402 3.98577 4.15367 4.21054 4.24905 4.26014 4.34455 4.34543 4.36807 4.39583 4.46557 4.53389 4.62406 4.65330 4.67122 4.77143 4.79550 4.87154 4.93512 4.98705 5.02447 5.06596 5.12477 5.16651 5.18626 5.22917 5.33275 5.39533 5.42007 5.46778 5.50797 5.76734 5.84512 6.11812 6.36594 6.53614 6.92136 7.12086 7.64288 8.02759 9.04547 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.016542 B = 0.003010 C = 0.002962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1692.272601 B = 9298.645408 C = 9450.766449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.333 6.333 3 C 0.155 3.845 4 C -0.216 4.216 5 C -0.047 4.047 6 C -0.159 4.159 7 C -0.054 4.054 8 C -0.192 4.192 9 C 0.564 3.436 10 O -0.586 6.586 11 N -0.613 5.613 12 C 0.094 3.906 13 C -0.108 4.108 14 C -0.078 4.078 15 C 0.133 3.867 16 C -0.087 4.087 17 C -0.135 4.135 18 C 0.117 3.883 19 N -0.618 5.618 20 C -0.242 4.242 21 H 0.040 0.960 22 C -0.042 4.042 23 N -0.962 5.962 24 Si 0.955 3.045 25 H -0.276 1.276 26 H -0.315 1.315 27 H -0.253 1.253 28 C 0.163 3.837 29 H 0.070 0.930 30 H 0.106 0.894 31 H 0.078 0.922 32 H 0.160 0.840 33 H 0.168 0.832 34 H 0.162 0.838 35 H 0.140 0.860 36 H 0.079 0.921 37 H 0.098 0.902 38 H 0.094 0.906 39 H 0.116 0.884 40 H 0.048 0.952 41 H 0.029 0.971 42 H 0.089 0.911 43 H 0.076 0.924 44 H 0.084 0.916 45 H 0.037 0.963 46 H 0.044 0.956 47 H 0.042 0.958 48 H 0.260 0.740 49 H 0.046 0.954 50 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.569 13.591 17.756 29.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.246 6.246 3 C 0.107 3.893 4 C -0.234 4.234 5 C -0.065 4.065 6 C -0.177 4.177 7 C -0.073 4.073 8 C -0.196 4.196 9 C 0.355 3.645 10 O -0.467 6.467 11 N -0.346 5.346 12 C -0.027 4.027 13 C -0.146 4.146 14 C -0.080 4.080 15 C 0.011 3.989 16 C -0.125 4.125 17 C -0.174 4.174 18 C -0.008 4.008 19 N -0.342 5.342 20 C -0.372 4.372 21 H 0.058 0.942 22 C -0.236 4.236 23 N -0.609 5.609 24 Si 0.784 3.216 25 H -0.203 1.203 26 H -0.244 1.244 27 H -0.177 1.177 28 C 0.038 3.962 29 H 0.088 0.912 30 H 0.125 0.875 31 H 0.097 0.903 32 H 0.178 0.822 33 H 0.186 0.814 34 H 0.179 0.821 35 H 0.158 0.842 36 H 0.097 0.903 37 H 0.116 0.884 38 H 0.112 0.888 39 H 0.134 0.866 40 H 0.066 0.934 41 H 0.047 0.953 42 H 0.108 0.892 43 H 0.095 0.905 44 H 0.102 0.898 45 H 0.056 0.944 46 H 0.062 0.938 47 H 0.060 0.940 48 H 0.069 0.931 49 H 0.065 0.935 50 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -18.681 12.836 17.267 28.494 hybrid contribution 0.697 -1.016 -1.019 1.598 sum -17.984 11.820 16.248 26.966 Atomic orbital electron populations 1.23402 0.76190 1.05337 1.02850 1.86219 1.23735 1.27251 1.87415 1.19323 0.90798 0.85749 0.93381 1.21539 1.01409 0.91225 1.09258 1.21608 0.94841 0.97788 0.92247 1.21395 0.94210 0.98715 1.03360 1.21484 1.01056 0.90178 0.94556 1.19253 0.91271 0.93597 1.15502 1.18396 0.79975 0.87847 0.78289 1.90752 1.71282 1.39182 1.45509 1.48574 1.20418 1.20120 1.45438 1.22839 0.98426 0.90111 0.91311 1.22877 0.98677 0.96807 0.96257 1.21500 0.93840 0.97757 0.94949 1.21719 0.88992 0.88935 0.99294 1.21295 1.01319 0.93236 0.96607 1.22000 0.97646 0.99091 0.98626 1.21453 0.96348 0.88029 0.94956 1.44458 1.70192 1.14201 1.05332 1.18755 1.10466 1.24105 0.83873 0.94225 1.25908 1.01046 1.00449 0.96226 1.70037 1.34383 1.44475 1.12002 0.85807 0.78720 0.78564 0.78512 1.20350 1.24385 1.17702 1.20983 0.92108 0.89481 0.93603 0.91184 0.87546 0.90344 0.82249 0.81411 0.82053 0.84223 0.90288 0.88426 0.88794 0.86570 0.93375 0.95258 0.89227 0.90498 0.89799 0.94406 0.93795 0.93980 0.93128 0.93496 0.92780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 9.81 113.37 1.11 1.38 16 2 O -0.33 -9.84 9.18 -73.21 -0.67 -10.51 16 3 C 0.15 4.14 6.67 22.85 0.15 4.29 16 4 C -0.22 -3.67 9.03 22.34 0.20 -3.47 16 5 C -0.05 -0.60 10.03 22.30 0.22 -0.38 16 6 C -0.16 -2.35 10.02 22.23 0.22 -2.13 16 7 C -0.05 -1.19 8.18 22.52 0.18 -1.01 16 8 C -0.19 -5.74 5.40 -20.01 -0.11 -5.85 16 9 C 0.56 21.87 7.34 86.70 0.64 22.51 16 10 O -0.59 -28.78 16.35 12.37 0.20 -28.58 16 11 N -0.61 -20.70 3.33 -815.55 -2.72 -23.42 16 12 C 0.09 2.11 4.94 86.97 0.43 2.54 16 13 C -0.11 -2.11 6.01 31.88 0.19 -1.92 16 14 C -0.08 -2.31 0.54 -51.91 -0.03 -2.34 16 15 C 0.13 5.07 5.06 86.47 0.44 5.50 16 16 C -0.09 -2.31 4.52 30.40 0.14 -2.17 16 17 C -0.13 -4.57 5.92 30.71 0.18 -4.39 16 18 C 0.12 4.93 4.20 86.36 0.36 5.29 16 19 N -0.62 -29.10 2.42 -700.22 -1.70 -30.80 16 20 C -0.24 -14.26 10.06 84.03 0.85 -13.42 16 21 H 0.04 2.62 8.04 -2.91 -0.02 2.60 16 22 C -0.04 -2.57 5.22 84.86 0.44 -2.12 16 23 N -0.96 -63.47 13.97 21.65 0.30 -63.17 16 24 Si 0.96 47.70 24.36 68.60 1.67 49.37 16 25 H -0.28 -13.12 6.51 99.48 0.65 -12.47 16 26 H -0.31 -16.05 7.11 99.48 0.71 -15.34 16 27 H -0.25 -11.70 6.79 99.48 0.68 -11.03 16 28 C 0.16 5.92 4.97 86.07 0.43 6.35 16 29 H 0.07 0.93 7.67 -2.39 -0.02 0.91 16 30 H 0.11 1.56 8.14 -2.39 -0.02 1.54 16 31 H 0.08 0.87 7.65 -2.39 -0.02 0.86 16 32 H 0.16 1.72 6.30 -2.91 -0.02 1.70 16 33 H 0.17 0.83 8.06 -2.91 -0.02 0.81 16 34 H 0.16 1.36 8.06 -2.91 -0.02 1.34 16 35 H 0.14 2.87 5.84 -2.91 -0.02 2.86 16 36 H 0.08 1.64 6.69 -2.39 -0.02 1.63 16 37 H 0.10 1.74 7.27 -2.39 -0.02 1.73 16 38 H 0.09 1.55 8.02 -2.39 -0.02 1.54 16 39 H 0.12 1.64 7.98 -2.39 -0.02 1.62 16 40 H 0.05 1.90 7.61 -2.39 -0.02 1.88 16 41 H 0.03 1.44 7.55 -2.38 -0.02 1.42 16 42 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 43 H 0.08 1.77 8.11 -2.39 -0.02 1.75 16 44 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 45 H 0.04 1.48 7.28 -2.39 -0.02 1.46 16 46 H 0.04 1.70 7.26 -2.39 -0.02 1.68 16 47 H 0.04 2.03 4.20 -2.38 -0.01 2.02 16 48 H 0.26 16.26 8.31 -92.70 -0.77 15.49 16 49 H 0.05 1.82 7.46 -2.39 -0.02 1.80 16 50 H 0.05 1.72 8.11 -2.39 -0.02 1.70 16 Total: -1.00 -88.64 379.83 3.99 -84.64 By element: Atomic # 1 Polarization: 12.94 SS G_CDS: 0.85 Total: 13.79 kcal Atomic # 6 Polarization: 2.62 SS G_CDS: 6.05 Total: 8.67 kcal Atomic # 7 Polarization: -113.27 SS G_CDS: -4.11 Total: -117.38 kcal Atomic # 8 Polarization: -38.62 SS G_CDS: -0.47 Total: -39.09 kcal Atomic # 14 Polarization: 47.70 SS G_CDS: 1.67 Total: 49.37 kcal Total: -88.64 3.99 -84.64 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040501518.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.449 kcal (2) G-P(sol) polarization free energy of solvation -88.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds