Wall clock time and date at job start Wed Apr 1 2020 03:07:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35654 * 116.99939 * 2 1 4 4 C 1.38705 * 120.14997 * 359.97438 * 3 2 1 5 5 C 1.38058 * 120.08239 * 179.72512 * 4 3 2 6 6 C 1.38548 * 120.38942 * 0.30028 * 5 4 3 7 7 C 1.37784 * 120.30312 * 0.02562 * 6 5 4 8 8 C 1.39708 * 119.90735 * 359.97438 * 7 6 5 9 9 C 1.47539 * 120.19620 * 179.97438 * 8 7 6 10 10 O 1.21590 * 120.00299 * 133.09647 * 9 8 7 11 11 N 1.34783 * 119.99649 * 313.10090 * 9 8 7 12 12 C 1.47090 * 125.62722 * 4.79856 * 11 9 8 13 13 C 1.54466 * 107.30238 * 180.98089 * 12 11 9 14 14 C 1.54355 * 102.85404 * 21.47266 * 13 12 11 15 15 C 1.47577 * 125.62614 * 184.48742 * 11 9 8 16 16 C 1.52067 * 110.61048 * 83.54337 * 14 13 12 17 17 C 1.53196 * 109.67789 * 64.18492 * 16 14 13 18 18 C 1.53188 * 109.27856 * 59.96353 * 17 16 14 19 19 N 1.46932 * 108.92598 * 304.67759 * 18 17 16 20 20 C 1.36937 * 120.71112 * 234.27907 * 19 18 17 21 21 H 1.07999 * 120.00157 * 148.29401 * 20 19 18 22 22 C 1.38811 * 120.00227 * 328.29499 * 20 19 18 23 23 N 1.31620 * 120.00468 * 162.11367 * 22 20 19 24 24 Si 1.86809 * 119.99611 * 342.11338 * 22 20 19 25 25 H 1.48503 * 109.46986 * 89.39535 * 24 22 20 26 26 H 1.48504 * 109.46931 * 209.39093 * 24 22 20 27 27 H 1.48493 * 109.47095 * 329.39187 * 24 22 20 28 28 C 1.47109 * 118.57791 * 54.26445 * 19 18 17 29 29 H 1.09001 * 109.47237 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46787 * 299.99688 * 1 2 3 31 31 H 1.08998 * 109.47392 * 59.99852 * 1 2 3 32 32 H 1.07998 * 119.95866 * 0.02562 * 4 3 2 33 33 H 1.07994 * 119.80242 * 180.28195 * 5 4 3 34 34 H 1.08003 * 119.84862 * 179.97438 * 6 5 4 35 35 H 1.07999 * 120.05103 * 179.97438 * 7 6 5 36 36 H 1.08999 * 109.87152 * 300.40617 * 12 11 9 37 37 H 1.08994 * 109.87908 * 61.40270 * 12 11 9 38 38 H 1.08998 * 110.73850 * 139.81878 * 13 12 11 39 39 H 1.08999 * 110.73409 * 263.13037 * 13 12 11 40 40 H 1.08995 * 110.37614 * 275.54919 * 15 11 9 41 41 H 1.09003 * 110.37738 * 37.89992 * 15 11 9 42 42 H 1.08994 * 109.43873 * 184.25036 * 16 14 13 43 43 H 1.09005 * 109.43886 * 304.16686 * 16 14 13 44 44 H 1.08999 * 109.49972 * 179.90324 * 17 16 14 45 45 H 1.08996 * 109.50256 * 299.98137 * 17 16 14 46 46 H 1.09000 * 109.55717 * 64.51456 * 18 17 16 47 47 H 1.08999 * 109.55622 * 184.73068 * 18 17 16 48 48 H 0.96994 * 119.99948 * 179.97438 * 23 22 20 49 49 H 1.09005 * 109.57703 * 187.93695 * 28 19 18 50 50 H 1.08999 * 109.58001 * 67.54844 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2087 0.0000 4 6 1.2924 2.3739 -0.0005 5 6 1.9206 3.6033 0.0052 6 6 3.3038 3.6836 0.0053 7 6 4.0668 2.5363 -0.0010 8 6 3.4442 1.2857 -0.0068 9 6 4.2550 0.0531 -0.0140 10 8 3.9889 -0.8542 0.7504 11 7 5.2908 -0.0671 -0.8680 12 6 5.7828 0.9842 -1.7715 13 6 6.9613 0.3874 -2.5720 14 6 6.7149 -1.1325 -2.4644 15 6 6.1224 -1.2731 -1.0463 16 6 5.7189 -1.5893 -3.5188 17 6 6.3097 -1.3714 -4.9153 18 6 7.6033 -2.1810 -5.0492 19 7 8.5146 -1.8069 -3.9590 20 6 9.7895 -1.3851 -4.2269 21 1 10.2671 -0.6644 -3.5797 22 6 10.4681 -1.8837 -5.3304 23 7 11.5225 -1.2488 -5.7969 24 14 9.8849 -3.4561 -6.1534 25 1 8.8935 -3.1243 -7.2082 26 1 11.0441 -4.1538 -6.7656 27 1 9.2535 -4.3399 -5.1409 28 6 8.0279 -1.8950 -2.5735 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 0.2138 2.3194 -0.0005 33 1 1.3304 4.5077 0.0094 34 1 3.7861 4.6499 0.0093 35 1 5.1447 2.6037 -0.0013 36 1 4.9885 1.2888 -2.4528 37 1 6.1226 1.8421 -1.1915 38 1 6.9250 0.7116 -3.6120 39 1 7.9137 0.6572 -2.1157 40 1 6.9171 -1.2997 -0.3008 41 1 5.5081 -2.1711 -0.9796 42 1 5.5016 -2.6481 -3.3780 43 1 4.7981 -1.0141 -3.4214 44 1 5.5943 -1.7012 -5.6686 45 1 6.5260 -0.3126 -5.0577 46 1 7.3759 -3.2451 -4.9860 47 1 8.0717 -1.9643 -6.0092 48 1 11.9968 -1.5975 -6.5677 49 1 8.7629 -1.4549 -1.8995 50 1 7.8665 -2.9400 -2.3088 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001040501519.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:07:15 Heat of formation + Delta-G solvation = -10.298222 kcal Electronic energy + Delta-G solvation = -31230.795551 eV Core-core repulsion = 27224.239596 eV Total energy + Delta-G solvation = -4006.555955 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -40.89947 -39.94362 -38.34013 -37.50553 -35.99248 -33.10653 -31.95591 -30.88837 -30.84739 -30.46089 -29.44595 -27.66814 -26.15780 -25.32441 -24.04072 -22.63076 -22.37597 -21.95339 -21.21813 -19.81293 -18.55525 -17.98812 -17.08761 -16.73725 -16.59560 -16.11274 -15.77265 -15.66280 -15.36717 -15.11165 -14.46278 -14.22466 -14.02189 -13.84515 -13.65965 -13.50588 -13.32084 -13.13390 -12.82377 -12.74417 -12.41891 -12.31877 -12.15295 -12.00084 -11.86619 -11.51005 -11.46105 -11.44738 -11.33572 -10.86760 -10.70731 -10.46481 -10.41925 -10.00521 -9.84963 -9.81392 -9.61484 -9.47046 -9.31538 -8.61774 -8.56661 -8.44275 -6.90741 -5.95709 -3.35762 0.72747 1.09319 2.73064 2.95179 3.02593 3.32277 3.48687 3.51489 3.52527 4.31814 4.45820 4.53062 4.56290 4.72818 4.75742 4.80888 4.83289 4.96564 4.99956 5.07419 5.15935 5.17396 5.20428 5.32582 5.34066 5.48822 5.51401 5.60172 5.68200 5.79082 5.84763 5.88768 5.94565 5.97286 6.04449 6.11567 6.14640 6.20861 6.31473 6.36219 6.37452 6.43506 6.52483 6.59402 6.62496 6.69724 6.76977 6.96666 7.05393 7.59769 7.99383 8.23407 8.33522 8.93937 9.71366 10.11528 11.20343 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.020982 B = 0.002732 C = 0.002623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1334.137477 B =10245.160219 C =10674.230097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.297 6.297 3 C 0.174 3.826 4 C -0.217 4.217 5 C -0.061 4.061 6 C -0.163 4.163 7 C -0.052 4.052 8 C -0.157 4.157 9 C 0.579 3.421 10 O -0.530 6.530 11 N -0.610 5.610 12 C 0.098 3.902 13 C -0.110 4.110 14 C -0.084 4.084 15 C 0.119 3.881 16 C -0.092 4.092 17 C -0.135 4.135 18 C 0.125 3.875 19 N -0.602 5.602 20 C -0.257 4.257 21 H 0.084 0.916 22 C 0.026 3.974 23 N -0.910 5.910 24 Si 0.885 3.115 25 H -0.288 1.288 26 H -0.304 1.304 27 H -0.271 1.271 28 C 0.165 3.835 29 H 0.102 0.898 30 H 0.057 0.943 31 H 0.056 0.944 32 H 0.133 0.867 33 H 0.128 0.872 34 H 0.130 0.870 35 H 0.138 0.862 36 H 0.064 0.936 37 H 0.066 0.934 38 H 0.089 0.911 39 H 0.079 0.921 40 H 0.070 0.930 41 H 0.075 0.925 42 H 0.057 0.943 43 H 0.051 0.949 44 H 0.052 0.948 45 H 0.066 0.934 46 H 0.023 0.977 47 H 0.072 0.928 48 H 0.262 0.738 49 H 0.066 0.934 50 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.674 9.380 10.083 25.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.209 6.209 3 C 0.127 3.873 4 C -0.236 4.236 5 C -0.079 4.079 6 C -0.181 4.181 7 C -0.070 4.070 8 C -0.161 4.161 9 C 0.368 3.632 10 O -0.407 6.407 11 N -0.343 5.343 12 C -0.025 4.025 13 C -0.147 4.147 14 C -0.087 4.087 15 C -0.003 4.003 16 C -0.130 4.130 17 C -0.174 4.174 18 C -0.001 4.001 19 N -0.326 5.326 20 C -0.386 4.386 21 H 0.101 0.899 22 C -0.173 4.173 23 N -0.553 5.553 24 Si 0.716 3.284 25 H -0.215 1.215 26 H -0.233 1.233 27 H -0.196 1.196 28 C 0.038 3.962 29 H 0.120 0.880 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.151 0.849 33 H 0.146 0.854 34 H 0.148 0.852 35 H 0.155 0.845 36 H 0.083 0.917 37 H 0.084 0.916 38 H 0.108 0.892 39 H 0.097 0.903 40 H 0.088 0.912 41 H 0.094 0.906 42 H 0.075 0.925 43 H 0.070 0.930 44 H 0.071 0.929 45 H 0.085 0.915 46 H 0.040 0.960 47 H 0.090 0.910 48 H 0.072 0.928 49 H 0.084 0.916 50 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -21.634 8.686 10.430 25.539 hybrid contribution -0.566 -0.621 -0.645 1.060 sum -22.200 8.065 9.785 25.566 Atomic orbital electron populations 1.23130 0.78285 1.04339 1.01232 1.86221 1.21290 1.26075 1.87270 1.18951 0.90766 0.84791 0.92824 1.21201 1.00205 0.92044 1.10128 1.21091 0.94761 0.96993 0.95093 1.21008 0.93796 0.98491 1.04831 1.21309 1.00474 0.90423 0.94786 1.19226 0.90786 0.94334 1.11707 1.17606 0.79132 0.86536 0.79945 1.90792 1.69313 1.41181 1.39377 1.48462 1.30995 1.15503 1.39383 1.22329 0.97355 0.90580 0.92253 1.22573 0.96678 0.94455 1.01029 1.21656 0.97862 0.96365 0.92796 1.22262 0.93622 0.87705 0.96750 1.21182 0.96717 1.00447 0.94654 1.22075 0.98056 1.01672 0.95589 1.21346 0.90124 0.95561 0.93043 1.44302 1.10716 1.78246 0.99309 1.18852 0.88725 1.19190 1.11814 0.89864 1.25364 0.95655 0.97974 0.98291 1.69804 1.21472 1.39075 1.24961 0.86916 0.76535 0.85800 0.79155 1.21533 1.23261 1.19634 1.20705 0.91584 0.96273 0.87606 0.87984 0.92488 0.92556 0.84927 0.85396 0.85183 0.84451 0.91718 0.91631 0.89240 0.90267 0.91157 0.90635 0.92465 0.93008 0.92907 0.91519 0.95959 0.91036 0.92766 0.91551 0.95720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 9.81 101.05 0.99 1.18 16 2 O -0.30 -3.82 9.47 -30.18 -0.29 -4.11 16 3 C 0.17 2.13 6.67 -38.69 -0.26 1.87 16 4 C -0.22 -1.95 9.03 -39.47 -0.36 -2.30 16 5 C -0.06 -0.47 10.03 -39.53 -0.40 -0.87 16 6 C -0.16 -1.34 10.02 -39.63 -0.40 -1.74 16 7 C -0.05 -0.53 8.52 -39.20 -0.33 -0.86 16 8 C -0.16 -2.05 5.44 -104.84 -0.57 -2.62 16 9 C 0.58 9.14 7.15 -12.47 -0.09 9.05 16 10 O -0.53 -10.21 16.73 -6.23 -0.10 -10.31 16 11 N -0.61 -8.74 3.32 -171.85 -0.57 -9.31 16 12 C 0.10 1.19 5.27 -2.95 -0.02 1.18 16 13 C -0.11 -1.58 5.67 -25.25 -0.14 -1.72 16 14 C -0.08 -1.31 0.55 -153.97 -0.08 -1.40 16 15 C 0.12 1.77 5.81 -2.76 -0.02 1.76 16 16 C -0.09 -1.44 4.69 -27.10 -0.13 -1.56 16 17 C -0.13 -2.29 5.91 -26.53 -0.16 -2.45 16 18 C 0.12 2.63 4.18 -3.71 -0.02 2.61 16 19 N -0.60 -13.59 2.60 -172.75 -0.45 -14.04 16 20 C -0.26 -6.89 10.03 -15.06 -0.15 -7.04 16 21 H 0.08 2.38 8.06 -52.49 -0.42 1.96 16 22 C 0.03 0.74 5.25 -17.43 -0.09 0.65 16 23 N -0.91 -27.39 13.97 55.49 0.78 -26.62 16 24 Si 0.89 22.21 24.38 -169.99 -4.14 18.07 16 25 H -0.29 -6.95 6.54 56.52 0.37 -6.58 16 26 H -0.30 -7.82 7.11 56.52 0.40 -7.42 16 27 H -0.27 -6.75 6.82 56.52 0.39 -6.36 16 28 C 0.16 3.09 5.20 -4.10 -0.02 3.07 16 29 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.06 0.34 7.66 -51.93 -0.40 -0.06 16 31 H 0.06 0.33 7.66 -51.93 -0.40 -0.07 16 32 H 0.13 0.85 6.30 -52.49 -0.33 0.52 16 33 H 0.13 0.63 8.06 -52.49 -0.42 0.21 16 34 H 0.13 0.76 8.06 -52.48 -0.42 0.33 16 35 H 0.14 1.24 5.88 -52.49 -0.31 0.93 16 36 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.07 0.68 5.94 -51.93 -0.31 0.37 16 38 H 0.09 1.37 6.09 -51.93 -0.32 1.05 16 39 H 0.08 1.18 7.87 -51.93 -0.41 0.78 16 40 H 0.07 1.02 8.01 -51.93 -0.42 0.60 16 41 H 0.08 1.18 7.99 -51.93 -0.41 0.77 16 42 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 43 H 0.05 0.76 7.83 -51.93 -0.41 0.36 16 44 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 45 H 0.07 1.14 6.31 -51.93 -0.33 0.81 16 46 H 0.02 0.48 7.14 -51.93 -0.37 0.11 16 47 H 0.07 1.66 4.75 -51.93 -0.25 1.41 16 48 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 49 H 0.07 1.24 7.76 -51.93 -0.40 0.84 16 50 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 LS Contribution 380.56 15.07 5.74 5.74 Total: -1.00 -33.67 380.56 -8.89 -42.57 By element: Atomic # 1 Polarization: 6.83 SS G_CDS: -7.62 Total: -0.79 kcal Atomic # 6 Polarization: 1.04 SS G_CDS: -2.23 Total: -1.19 kcal Atomic # 7 Polarization: -49.72 SS G_CDS: -0.24 Total: -49.96 kcal Atomic # 8 Polarization: -14.03 SS G_CDS: -0.39 Total: -14.42 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -4.14 Total: 18.07 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -33.67 -8.89 -42.57 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040501519.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.268 kcal (2) G-P(sol) polarization free energy of solvation -33.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.566 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds