Wall clock time and date at job start Wed Apr 1 2020 03:07:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35654 * 116.99939 * 2 1 4 4 C 1.38705 * 120.14997 * 359.97438 * 3 2 1 5 5 C 1.38058 * 120.08239 * 179.72512 * 4 3 2 6 6 C 1.38548 * 120.38942 * 0.30028 * 5 4 3 7 7 C 1.37784 * 120.30312 * 0.02562 * 6 5 4 8 8 C 1.39708 * 119.90735 * 359.97438 * 7 6 5 9 9 C 1.47539 * 120.19620 * 179.97438 * 8 7 6 10 10 O 1.21590 * 120.00299 * 133.09647 * 9 8 7 11 11 N 1.34783 * 119.99649 * 313.10090 * 9 8 7 12 12 C 1.47090 * 125.62722 * 4.79856 * 11 9 8 13 13 C 1.54466 * 107.30238 * 180.98089 * 12 11 9 14 14 C 1.54355 * 102.85404 * 21.47266 * 13 12 11 15 15 C 1.47577 * 125.62614 * 184.48742 * 11 9 8 16 16 C 1.52067 * 110.61048 * 83.54337 * 14 13 12 17 17 C 1.53196 * 109.67789 * 64.18492 * 16 14 13 18 18 C 1.53188 * 109.27856 * 59.96353 * 17 16 14 19 19 N 1.46932 * 108.92598 * 304.67759 * 18 17 16 20 20 C 1.36937 * 120.71112 * 234.27907 * 19 18 17 21 21 H 1.07999 * 120.00157 * 148.29401 * 20 19 18 22 22 C 1.38811 * 120.00227 * 328.29499 * 20 19 18 23 23 N 1.31620 * 120.00468 * 162.11367 * 22 20 19 24 24 Si 1.86809 * 119.99611 * 342.11338 * 22 20 19 25 25 H 1.48503 * 109.46986 * 89.39535 * 24 22 20 26 26 H 1.48504 * 109.46931 * 209.39093 * 24 22 20 27 27 H 1.48493 * 109.47095 * 329.39187 * 24 22 20 28 28 C 1.47109 * 118.57791 * 54.26445 * 19 18 17 29 29 H 1.09001 * 109.47237 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46787 * 299.99688 * 1 2 3 31 31 H 1.08998 * 109.47392 * 59.99852 * 1 2 3 32 32 H 1.07998 * 119.95866 * 0.02562 * 4 3 2 33 33 H 1.07994 * 119.80242 * 180.28195 * 5 4 3 34 34 H 1.08003 * 119.84862 * 179.97438 * 6 5 4 35 35 H 1.07999 * 120.05103 * 179.97438 * 7 6 5 36 36 H 1.08999 * 109.87152 * 300.40617 * 12 11 9 37 37 H 1.08994 * 109.87908 * 61.40270 * 12 11 9 38 38 H 1.08998 * 110.73850 * 139.81878 * 13 12 11 39 39 H 1.08999 * 110.73409 * 263.13037 * 13 12 11 40 40 H 1.08995 * 110.37614 * 275.54919 * 15 11 9 41 41 H 1.09003 * 110.37738 * 37.89992 * 15 11 9 42 42 H 1.08994 * 109.43873 * 184.25036 * 16 14 13 43 43 H 1.09005 * 109.43886 * 304.16686 * 16 14 13 44 44 H 1.08999 * 109.49972 * 179.90324 * 17 16 14 45 45 H 1.08996 * 109.50256 * 299.98137 * 17 16 14 46 46 H 1.09000 * 109.55717 * 64.51456 * 18 17 16 47 47 H 1.08999 * 109.55622 * 184.73068 * 18 17 16 48 48 H 0.96994 * 119.99948 * 179.97438 * 23 22 20 49 49 H 1.09005 * 109.57703 * 187.93695 * 28 19 18 50 50 H 1.08999 * 109.58001 * 67.54844 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2087 0.0000 4 6 1.2924 2.3739 -0.0005 5 6 1.9206 3.6033 0.0052 6 6 3.3038 3.6836 0.0053 7 6 4.0668 2.5363 -0.0010 8 6 3.4442 1.2857 -0.0068 9 6 4.2550 0.0531 -0.0140 10 8 3.9889 -0.8542 0.7504 11 7 5.2908 -0.0671 -0.8680 12 6 5.7828 0.9842 -1.7715 13 6 6.9613 0.3874 -2.5720 14 6 6.7149 -1.1325 -2.4644 15 6 6.1224 -1.2731 -1.0463 16 6 5.7189 -1.5893 -3.5188 17 6 6.3097 -1.3714 -4.9153 18 6 7.6033 -2.1810 -5.0492 19 7 8.5146 -1.8069 -3.9590 20 6 9.7895 -1.3851 -4.2269 21 1 10.2671 -0.6644 -3.5797 22 6 10.4681 -1.8837 -5.3304 23 7 11.5225 -1.2488 -5.7969 24 14 9.8849 -3.4561 -6.1534 25 1 8.8935 -3.1243 -7.2082 26 1 11.0441 -4.1538 -6.7656 27 1 9.2535 -4.3399 -5.1409 28 6 8.0279 -1.8950 -2.5735 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 0.2138 2.3194 -0.0005 33 1 1.3304 4.5077 0.0094 34 1 3.7861 4.6499 0.0093 35 1 5.1447 2.6037 -0.0013 36 1 4.9885 1.2888 -2.4528 37 1 6.1226 1.8421 -1.1915 38 1 6.9250 0.7116 -3.6120 39 1 7.9137 0.6572 -2.1157 40 1 6.9171 -1.2997 -0.3008 41 1 5.5081 -2.1711 -0.9796 42 1 5.5016 -2.6481 -3.3780 43 1 4.7981 -1.0141 -3.4214 44 1 5.5943 -1.7012 -5.6686 45 1 6.5260 -0.3126 -5.0577 46 1 7.3759 -3.2451 -4.9860 47 1 8.0717 -1.9643 -6.0092 48 1 11.9968 -1.5975 -6.5677 49 1 8.7629 -1.4549 -1.8995 50 1 7.8665 -2.9400 -2.3088 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001040501519.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:07:14 Heat of formation + Delta-G solvation = -30.967032 kcal Electronic energy + Delta-G solvation = -31231.691817 eV Core-core repulsion = 27224.239596 eV Total energy + Delta-G solvation = -4007.452222 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.89366 -40.97863 -39.56542 -38.26595 -37.47575 -34.79363 -33.21316 -32.64124 -31.94977 -31.15093 -30.62661 -28.32882 -27.45479 -27.10666 -25.07796 -23.81991 -23.45327 -23.07903 -22.71900 -20.83540 -19.80635 -18.88940 -18.62258 -18.15774 -17.48743 -17.25796 -16.97181 -16.74072 -16.58021 -15.87323 -15.72730 -15.55075 -15.28762 -15.15825 -15.06627 -14.80230 -14.43135 -14.32466 -14.14488 -13.78570 -13.65642 -13.56937 -13.41218 -13.24862 -13.04336 -12.93089 -12.57396 -12.46248 -12.23404 -12.13598 -12.07633 -12.00941 -11.97002 -11.53566 -11.49571 -11.21247 -11.15753 -10.98379 -10.63062 -10.05301 -9.66405 -9.23987 -8.82507 -8.13666 -5.48858 -0.01947 0.40759 1.31167 1.42872 1.51412 1.65872 1.96181 2.30521 2.43987 2.76031 3.08632 3.23685 3.44503 3.62955 3.69984 3.81633 3.85411 3.97971 4.15679 4.18644 4.24681 4.28181 4.35465 4.36673 4.37508 4.39861 4.49423 4.51843 4.58207 4.62808 4.68464 4.71961 4.79078 4.82375 4.88358 5.01460 5.03074 5.04710 5.09196 5.17368 5.19426 5.23446 5.30735 5.33876 5.42044 5.48512 5.56791 5.76587 5.93194 6.17976 6.35163 6.49304 6.95471 7.08562 7.64699 8.08342 9.06296 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.020982 B = 0.002732 C = 0.002623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1334.137477 B =10245.160219 C =10674.230097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.334 6.334 3 C 0.153 3.847 4 C -0.216 4.216 5 C -0.052 4.052 6 C -0.159 4.159 7 C -0.056 4.056 8 C -0.190 4.190 9 C 0.577 3.423 10 O -0.578 6.578 11 N -0.608 5.608 12 C 0.106 3.894 13 C -0.106 4.106 14 C -0.076 4.076 15 C 0.123 3.877 16 C -0.086 4.086 17 C -0.125 4.125 18 C 0.119 3.881 19 N -0.613 5.613 20 C -0.237 4.237 21 H 0.055 0.945 22 C -0.030 4.030 23 N -0.958 5.958 24 Si 0.943 3.057 25 H -0.272 1.272 26 H -0.314 1.314 27 H -0.267 1.267 28 C 0.163 3.837 29 H 0.108 0.892 30 H 0.071 0.929 31 H 0.073 0.927 32 H 0.157 0.843 33 H 0.164 0.836 34 H 0.159 0.841 35 H 0.145 0.855 36 H 0.077 0.923 37 H 0.089 0.911 38 H 0.083 0.917 39 H 0.069 0.931 40 H 0.071 0.929 41 H 0.066 0.934 42 H 0.057 0.943 43 H 0.066 0.934 44 H 0.077 0.923 45 H 0.066 0.934 46 H 0.025 0.975 47 H 0.050 0.950 48 H 0.260 0.740 49 H 0.060 0.940 50 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.838 11.202 10.225 29.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.247 6.247 3 C 0.105 3.895 4 C -0.234 4.234 5 C -0.070 4.070 6 C -0.177 4.177 7 C -0.074 4.074 8 C -0.193 4.193 9 C 0.367 3.633 10 O -0.458 6.458 11 N -0.341 5.341 12 C -0.016 4.016 13 C -0.144 4.144 14 C -0.078 4.078 15 C 0.000 4.000 16 C -0.124 4.124 17 C -0.164 4.164 18 C -0.006 4.006 19 N -0.337 5.337 20 C -0.367 4.367 21 H 0.073 0.927 22 C -0.225 4.225 23 N -0.604 5.604 24 Si 0.772 3.228 25 H -0.199 1.199 26 H -0.244 1.244 27 H -0.192 1.192 28 C 0.038 3.962 29 H 0.126 0.874 30 H 0.090 0.910 31 H 0.092 0.908 32 H 0.175 0.825 33 H 0.182 0.818 34 H 0.177 0.823 35 H 0.162 0.838 36 H 0.095 0.905 37 H 0.107 0.893 38 H 0.102 0.898 39 H 0.088 0.912 40 H 0.089 0.911 41 H 0.085 0.915 42 H 0.076 0.924 43 H 0.085 0.915 44 H 0.096 0.904 45 H 0.084 0.916 46 H 0.043 0.957 47 H 0.068 0.932 48 H 0.069 0.931 49 H 0.079 0.921 50 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -24.845 10.520 10.572 28.978 hybrid contribution 0.362 -1.104 -0.595 1.305 sum -24.482 9.416 9.978 28.064 Atomic orbital electron populations 1.23389 0.76141 1.05392 1.02757 1.86163 1.23764 1.27211 1.87603 1.19258 0.90818 0.85626 0.93757 1.21520 1.01378 0.91382 1.09133 1.21573 0.94947 0.97773 0.92711 1.21387 0.94183 0.98876 1.03287 1.21446 1.01067 0.90086 0.94844 1.19226 0.91227 0.93901 1.14974 1.18135 0.78981 0.87060 0.79088 1.90748 1.70558 1.43187 1.41322 1.48492 1.30675 1.15565 1.39351 1.22355 0.96630 0.90418 0.92152 1.22493 0.97302 0.93602 1.00983 1.21462 0.96179 0.96766 0.93442 1.22116 0.93623 0.88025 0.96208 1.21133 0.96915 1.00787 0.93535 1.21962 0.96359 1.00860 0.97180 1.21399 0.91446 0.96368 0.91400 1.44389 1.09724 1.78271 1.01318 1.18788 0.90167 1.17413 1.10345 0.92710 1.25923 0.96231 1.00636 0.99688 1.69925 1.23508 1.40762 1.26186 0.85975 0.75927 0.82200 0.78662 1.19885 1.24361 1.19228 1.20797 0.93035 0.96932 0.85443 0.87363 0.91034 0.90805 0.82502 0.81849 0.82330 0.83787 0.90491 0.89251 0.89841 0.91178 0.91107 0.91523 0.92376 0.91547 0.90436 0.91569 0.95701 0.93206 0.93059 0.92114 0.95440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 9.81 113.37 1.11 1.35 16 2 O -0.33 -8.49 9.47 -78.68 -0.74 -9.23 16 3 C 0.15 3.52 6.67 22.84 0.15 3.68 16 4 C -0.22 -3.19 9.03 22.34 0.20 -2.99 16 5 C -0.05 -0.58 10.03 22.30 0.22 -0.36 16 6 C -0.16 -2.00 10.02 22.24 0.22 -1.77 16 7 C -0.06 -1.02 8.52 22.52 0.19 -0.82 16 8 C -0.19 -4.76 5.44 -20.01 -0.11 -4.87 16 9 C 0.58 18.16 7.15 86.70 0.62 18.78 16 10 O -0.58 -22.91 16.73 7.01 0.12 -22.79 16 11 N -0.61 -16.94 3.32 -815.85 -2.71 -19.65 16 12 C 0.11 2.40 5.27 86.77 0.46 2.85 16 13 C -0.11 -2.93 5.67 31.55 0.18 -2.75 16 14 C -0.08 -2.30 0.55 -51.83 -0.03 -2.33 16 15 C 0.12 3.63 5.81 86.62 0.50 4.13 16 16 C -0.09 -2.50 4.69 30.35 0.14 -2.36 16 17 C -0.12 -3.96 5.91 30.72 0.18 -3.78 16 18 C 0.12 4.85 4.18 86.36 0.36 5.22 16 19 N -0.61 -27.55 2.60 -700.46 -1.82 -29.37 16 20 C -0.24 -12.96 10.03 84.03 0.84 -12.12 16 21 H 0.06 3.26 8.06 -2.91 -0.02 3.23 16 22 C -0.03 -1.72 5.25 84.86 0.45 -1.27 16 23 N -0.96 -59.30 13.97 21.65 0.30 -59.00 16 24 Si 0.94 46.43 24.38 68.60 1.67 48.10 16 25 H -0.27 -12.60 6.54 99.48 0.65 -11.95 16 26 H -0.31 -15.90 7.11 99.48 0.71 -15.19 16 27 H -0.27 -12.83 6.82 99.48 0.68 -12.15 16 28 C 0.16 6.09 5.20 86.01 0.45 6.53 16 29 H 0.11 1.25 8.14 -2.39 -0.02 1.23 16 30 H 0.07 0.72 7.66 -2.39 -0.02 0.71 16 31 H 0.07 0.71 7.66 -2.39 -0.02 0.69 16 32 H 0.16 1.43 6.30 -2.91 -0.02 1.41 16 33 H 0.16 0.66 8.06 -2.91 -0.02 0.64 16 34 H 0.16 1.07 8.06 -2.91 -0.02 1.04 16 35 H 0.14 2.25 5.88 -2.91 -0.02 2.23 16 36 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 37 H 0.09 1.63 5.94 -2.39 -0.01 1.61 16 38 H 0.08 2.44 6.09 -2.39 -0.01 2.42 16 39 H 0.07 2.07 7.87 -2.39 -0.02 2.05 16 40 H 0.07 2.06 8.01 -2.39 -0.02 2.04 16 41 H 0.07 2.09 7.99 -2.39 -0.02 2.07 16 42 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 43 H 0.07 1.79 7.83 -2.38 -0.02 1.77 16 44 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 45 H 0.07 2.13 6.31 -2.39 -0.02 2.11 16 46 H 0.03 1.02 7.14 -2.39 -0.02 1.00 16 47 H 0.05 2.26 4.75 -2.39 -0.01 2.25 16 48 H 0.26 15.43 8.31 -92.71 -0.77 14.66 16 49 H 0.06 2.30 7.76 -2.38 -0.02 2.28 16 50 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 Total: -1.00 -76.14 380.56 3.83 -72.32 By element: Atomic # 1 Polarization: 11.66 SS G_CDS: 0.86 Total: 12.52 kcal Atomic # 6 Polarization: 0.97 SS G_CDS: 6.15 Total: 7.11 kcal Atomic # 7 Polarization: -103.80 SS G_CDS: -4.23 Total: -108.02 kcal Atomic # 8 Polarization: -31.40 SS G_CDS: -0.63 Total: -32.02 kcal Atomic # 14 Polarization: 46.43 SS G_CDS: 1.67 Total: 48.10 kcal Total: -76.14 3.83 -72.32 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040501519.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.348 kcal (2) G-P(sol) polarization free energy of solvation -76.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.315 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds