Wall clock time and date at job start Wed Apr 1 2020 03:24:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42909 * 1 3 3 C 1.42903 * 113.99660 * 2 1 4 4 C 1.50703 * 109.46673 * 180.02562 * 3 2 1 5 5 C 1.38360 * 119.85340 * 89.99834 * 4 3 2 6 6 C 1.37957 * 120.14684 * 180.02562 * 5 4 3 7 7 C 1.39573 * 119.84838 * 0.02562 * 6 5 4 8 8 C 1.47848 * 120.14196 * 179.97438 * 7 6 5 9 9 O 1.21549 * 120.00253 * 5.35697 * 8 7 6 10 10 N 1.34786 * 120.00072 * 185.35484 * 8 7 6 11 11 C 1.46500 * 119.99759 * 182.49201 * 10 8 7 12 12 H 1.08999 * 109.32223 * 51.34835 * 11 10 8 13 13 C 1.53028 * 109.32635 * 291.69822 * 11 10 8 14 14 C 1.53969 * 108.83272 * 295.32286 * 13 11 10 15 15 H 1.09005 * 113.67413 * 168.55789 * 14 13 11 16 16 C 1.55428 * 106.41516 * 293.82543 * 14 13 11 17 17 C 1.55168 * 100.35395 * 73.37141 * 16 14 13 18 18 H 1.09002 * 112.48051 * 162.66750 * 17 16 14 19 19 C 1.52991 * 109.17854 * 170.90261 * 11 10 8 20 20 N 1.47788 * 104.25607 * 40.55271 * 17 16 14 21 21 C 1.36934 * 125.85943 * 153.27513 * 20 17 16 22 22 H 1.08001 * 120.00157 * 9.21164 * 21 20 17 23 23 C 1.38813 * 120.00296 * 189.21739 * 21 20 17 24 24 N 1.31624 * 119.99654 * 356.51572 * 23 21 20 25 25 Si 1.86790 * 120.00203 * 176.51549 * 23 21 20 26 26 H 1.48504 * 109.47374 * 89.99900 * 25 23 21 27 27 H 1.48503 * 109.47474 * 209.99560 * 25 23 21 28 28 H 1.48498 * 109.47462 * 330.00041 * 25 23 21 29 29 C 1.47083 * 108.28674 * 333.53694 * 20 17 16 30 30 C 1.39575 * 119.71819 * 0.25698 * 7 6 5 31 31 C 1.37967 * 119.84682 * 359.46430 * 30 7 6 32 32 H 1.08997 * 109.47063 * 59.99699 * 1 2 3 33 33 H 1.08999 * 109.46774 * 180.02562 * 1 2 3 34 34 H 1.09002 * 109.46836 * 300.00011 * 1 2 3 35 35 H 1.08992 * 109.47275 * 60.00136 * 3 2 1 36 36 H 1.09002 * 109.47106 * 299.99702 * 3 2 1 37 37 H 1.08003 * 119.92495 * 0.02562 * 5 4 3 38 38 H 1.07991 * 120.07819 * 180.02562 * 6 5 4 39 39 H 0.97001 * 119.99758 * 2.49512 * 10 8 7 40 40 H 1.09001 * 109.57711 * 175.51929 * 13 11 10 41 41 H 1.09000 * 109.57668 * 55.12625 * 13 11 10 42 42 H 1.09005 * 111.22945 * 315.59712 * 16 14 13 43 43 H 1.09000 * 111.27367 * 191.16812 * 16 14 13 44 44 H 1.09001 * 109.53024 * 305.19924 * 19 11 10 45 45 H 1.08990 * 109.53519 * 184.97391 * 19 11 10 46 46 H 0.97006 * 119.99643 * 180.02562 * 24 23 21 47 47 H 1.08999 * 109.97689 * 120.45468 * 29 20 17 48 48 H 1.08999 * 109.97753 * 241.73968 * 29 20 17 49 49 H 1.07993 * 120.08045 * 179.72597 * 30 7 6 50 50 H 1.07998 * 119.92818 * 180.27560 * 31 30 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5126 1.1865 -0.0006 5 6 4.1987 1.1323 -1.2009 6 6 5.5739 1.0228 -1.2086 7 6 6.2729 0.9662 -0.0019 8 6 7.7467 0.8483 -0.0025 9 8 8.3600 0.8984 -1.0507 10 7 8.4103 0.6852 1.1593 11 6 9.8739 0.6232 1.1644 12 1 10.2731 1.4791 0.6203 13 6 10.3284 -0.6683 0.4810 14 6 9.8506 -1.8687 1.3185 15 1 9.9564 -2.8270 0.8101 16 6 10.6248 -1.8011 2.6645 17 6 9.9038 -0.6054 3.3413 18 1 10.0808 -0.5661 4.4162 19 6 10.3737 0.6643 2.6098 20 7 8.4773 -0.8065 3.0112 21 6 7.4128 -0.3635 3.7499 22 1 7.5736 0.3104 4.5785 23 6 6.1271 -0.7805 3.4340 24 7 5.9233 -1.5466 2.3832 25 14 4.6862 -0.2547 4.5000 26 1 4.1307 1.0231 3.9862 27 1 3.6343 -1.3022 4.4624 28 1 5.1478 -0.0667 5.8988 29 6 8.3971 -1.5695 1.7564 30 6 5.5743 1.0154 1.2055 31 6 4.1995 1.1307 1.1990 32 1 -0.3633 0.5139 -0.8899 33 1 -0.3633 -1.0277 0.0005 34 1 -0.3633 0.5139 0.8900 35 1 1.6887 1.8464 0.8899 36 1 1.6886 1.8464 -0.8900 37 1 3.6564 1.1758 -2.1339 38 1 6.1083 0.9810 -2.1461 39 1 7.9186 0.6090 1.9921 40 1 11.4162 -0.6815 0.4114 41 1 9.8959 -0.7247 -0.5179 42 1 11.6808 -1.5847 2.5021 43 1 10.4965 -2.7172 3.2410 44 1 9.9693 1.5440 3.1104 45 1 11.4627 0.7075 2.6178 46 1 5.0248 -1.8378 2.1622 47 1 7.8586 -2.5026 1.9217 48 1 7.8923 -0.9781 0.9925 49 1 6.1090 0.9676 2.1425 50 1 3.6580 1.1734 2.1325 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001047198489.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:24:05 Heat of formation + Delta-G solvation = 30.914214 kcal Electronic energy + Delta-G solvation = -32960.120418 eV Core-core repulsion = 28955.351568 eV Total energy + Delta-G solvation = -4004.768850 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.79744 -39.03811 -37.83297 -36.90083 -33.82868 -33.25940 -31.64808 -30.81229 -30.31280 -30.25210 -28.00238 -27.07009 -25.43464 -25.21481 -23.21129 -22.41117 -21.99902 -21.10449 -19.74306 -19.35008 -18.68264 -17.54358 -16.69662 -16.32660 -15.95699 -15.74703 -15.36860 -15.07131 -14.63562 -14.32641 -14.08634 -13.91683 -13.62408 -13.59390 -13.06507 -12.73439 -12.54780 -12.40445 -12.17619 -12.16995 -11.96761 -11.84253 -11.71716 -11.60792 -11.46035 -11.38893 -11.02568 -10.92195 -10.66813 -10.53731 -10.48203 -10.15399 -9.86302 -9.71863 -9.65221 -9.59646 -9.37979 -8.92932 -8.76518 -8.31641 -8.24595 -7.39145 -6.91323 -5.92095 -3.31604 1.42586 2.04664 3.18071 3.32129 3.34464 3.48927 4.06609 4.20378 4.26369 4.67118 5.04011 5.10330 5.16151 5.23156 5.30148 5.30469 5.34689 5.38174 5.48025 5.56643 5.61003 5.62548 5.63770 5.72885 5.83490 5.94889 5.96835 6.05097 6.12606 6.17948 6.22218 6.30282 6.31825 6.43044 6.47796 6.59919 6.63562 6.73729 6.86240 6.88703 6.93725 6.97336 7.06822 7.12032 7.20210 7.47151 7.48839 7.54900 7.66665 7.79571 8.09595 8.71950 9.00931 9.28733 9.56548 10.28465 11.11604 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.013492 B = 0.004821 C = 0.003925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2074.758524 B = 5806.917862 C = 7131.976609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.380 6.380 3 C 0.104 3.896 4 C -0.078 4.078 5 C -0.126 4.126 6 C -0.069 4.069 7 C -0.120 4.120 8 C 0.547 3.453 9 O -0.575 6.575 10 N -0.689 5.689 11 C 0.161 3.839 12 H 0.060 0.940 13 C -0.124 4.124 14 C -0.120 4.120 15 H 0.074 0.926 16 C -0.128 4.128 17 C 0.150 3.850 18 H 0.067 0.933 19 C -0.141 4.141 20 N -0.596 5.596 21 C -0.267 4.267 22 H 0.081 0.919 23 C 0.007 3.993 24 N -0.884 5.884 25 Si 0.888 3.112 26 H -0.276 1.276 27 H -0.285 1.285 28 H -0.281 1.281 29 C 0.146 3.854 30 C -0.042 4.042 31 C -0.119 4.119 32 H 0.039 0.961 33 H 0.085 0.915 34 H 0.039 0.961 35 H 0.054 0.946 36 H 0.055 0.945 37 H 0.118 0.882 38 H 0.128 0.872 39 H 0.437 0.563 40 H 0.056 0.944 41 H 0.073 0.927 42 H 0.059 0.941 43 H 0.059 0.941 44 H 0.061 0.939 45 H 0.064 0.936 46 H 0.262 0.738 47 H 0.047 0.953 48 H 0.075 0.925 49 H 0.154 0.846 50 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.020 5.007 -2.491 5.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.299 6.299 3 C 0.028 3.972 4 C -0.079 4.079 5 C -0.144 4.144 6 C -0.088 4.088 7 C -0.123 4.123 8 C 0.335 3.665 9 O -0.458 6.458 10 N -0.355 5.355 11 C 0.056 3.944 12 H 0.078 0.922 13 C -0.162 4.162 14 C -0.139 4.139 15 H 0.093 0.907 16 C -0.166 4.166 17 C 0.042 3.958 18 H 0.085 0.915 19 C -0.181 4.181 20 N -0.323 5.323 21 C -0.394 4.394 22 H 0.099 0.901 23 C -0.193 4.193 24 N -0.526 5.526 25 Si 0.717 3.283 26 H -0.203 1.203 27 H -0.211 1.211 28 H -0.207 1.207 29 C 0.022 3.978 30 C -0.060 4.060 31 C -0.138 4.138 32 H 0.057 0.943 33 H 0.103 0.897 34 H 0.057 0.943 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.136 0.864 38 H 0.146 0.854 39 H 0.293 0.707 40 H 0.074 0.926 41 H 0.091 0.909 42 H 0.078 0.922 43 H 0.078 0.922 44 H 0.079 0.921 45 H 0.082 0.918 46 H 0.073 0.927 47 H 0.065 0.935 48 H 0.093 0.907 49 H 0.171 0.829 50 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -1.763 4.824 -3.116 6.007 hybrid contribution -1.300 0.090 1.027 1.659 sum -3.063 4.913 -2.089 6.155 Atomic orbital electron populations 1.22739 0.81569 1.02687 0.99639 1.88058 1.19076 1.27456 1.95295 1.21368 0.90538 0.84978 1.00338 1.19605 0.93303 1.01104 0.93872 1.20736 0.93908 1.02859 0.96890 1.21107 0.93488 0.96537 0.97644 1.19971 0.93484 1.04720 0.94092 1.18292 0.87191 0.76711 0.84297 1.90627 1.69485 1.53437 1.32231 1.47560 1.07068 1.68850 1.11978 1.20601 0.81260 0.96878 0.95666 0.92239 1.22064 0.99287 0.94892 0.99964 1.22817 0.99143 0.96819 0.95145 0.90746 1.22976 0.97621 0.98835 0.97167 1.21615 0.85854 0.91961 0.96338 0.91512 1.22522 0.99477 1.00800 0.95334 1.44947 0.99363 1.63755 1.24197 1.19102 0.84643 1.23958 1.11722 0.90072 1.24917 0.97415 0.99106 0.97839 1.69971 1.21322 1.36316 1.25029 0.86635 0.83038 0.78284 0.80375 1.20317 1.21094 1.20679 1.22118 0.90380 0.96839 0.88489 1.21939 0.94138 0.90998 0.98963 1.21059 0.94645 1.00988 0.97067 0.94275 0.89686 0.94254 0.92736 0.92690 0.86381 0.85439 0.70688 0.92574 0.90883 0.92229 0.92180 0.92064 0.91752 0.92698 0.93504 0.90712 0.82894 0.86321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 11.01 101.05 1.11 1.45 16 2 O -0.38 -6.03 10.69 -35.23 -0.38 -6.41 16 3 C 0.10 1.50 6.06 36.01 0.22 1.72 16 4 C -0.08 -1.37 5.52 -104.53 -0.58 -1.95 16 5 C -0.13 -2.14 9.68 -39.64 -0.38 -2.52 16 6 C -0.07 -1.31 9.59 -39.19 -0.38 -1.69 16 7 C -0.12 -2.53 5.85 -104.97 -0.61 -3.15 16 8 C 0.55 12.16 5.94 -12.32 -0.07 12.08 16 9 O -0.58 -13.50 14.93 5.32 0.08 -13.42 16 10 N -0.69 -14.51 2.73 -54.74 -0.15 -14.66 16 11 C 0.16 3.02 2.75 -67.92 -0.19 2.84 16 12 H 0.06 1.10 8.09 -51.93 -0.42 0.68 16 13 C -0.12 -2.27 5.14 -26.21 -0.13 -2.40 16 14 C -0.12 -2.29 4.33 -87.92 -0.38 -2.68 16 15 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 16 C -0.13 -2.19 6.18 -24.29 -0.15 -2.34 16 17 C 0.15 2.79 4.30 -65.62 -0.28 2.51 16 18 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 19 C -0.14 -2.37 5.41 -26.28 -0.14 -2.51 16 20 N -0.60 -13.20 1.75 -161.37 -0.28 -13.48 16 21 C -0.27 -6.31 8.01 -15.06 -0.12 -6.43 16 22 H 0.08 1.88 7.83 -52.49 -0.41 1.47 16 23 C 0.01 0.18 3.06 -17.43 -0.05 0.13 16 24 N -0.88 -22.49 9.00 55.49 0.50 -21.99 16 25 Si 0.89 19.46 27.53 -169.99 -4.68 14.79 16 26 H -0.28 -5.71 5.72 56.52 0.32 -5.38 16 27 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 28 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 29 C 0.15 3.33 3.93 -2.82 -0.01 3.32 16 30 C -0.04 -0.88 7.09 -39.18 -0.28 -1.16 16 31 C -0.12 -2.33 9.17 -39.64 -0.36 -2.70 16 32 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.05 0.72 8.08 -51.93 -0.42 0.30 16 36 H 0.05 0.66 8.08 -51.93 -0.42 0.24 16 37 H 0.12 1.66 8.06 -52.48 -0.42 1.24 16 38 H 0.13 2.32 7.66 -52.49 -0.40 1.92 16 39 H 0.44 9.58 2.36 -40.82 -0.10 9.48 16 40 H 0.06 0.89 7.97 -51.93 -0.41 0.47 16 41 H 0.07 1.49 6.61 -51.93 -0.34 1.15 16 42 H 0.06 0.88 7.75 -51.93 -0.40 0.47 16 43 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 44 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 45 H 0.06 0.91 8.00 -51.93 -0.42 0.49 16 46 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16 47 H 0.05 1.23 6.99 -51.93 -0.36 0.87 16 48 H 0.08 1.83 3.64 -58.72 -0.21 1.62 16 49 H 0.15 3.44 3.24 -52.49 -0.17 3.27 16 50 H 0.12 2.30 5.74 -52.49 -0.30 2.00 16 LS Contribution 364.97 15.07 5.50 5.50 Total: -1.00 -27.47 364.97 -9.59 -37.06 By element: Atomic # 1 Polarization: 25.49 SS G_CDS: -7.39 Total: 18.10 kcal Atomic # 6 Polarization: -2.68 SS G_CDS: -2.80 Total: -5.48 kcal Atomic # 7 Polarization: -50.21 SS G_CDS: 0.07 Total: -50.14 kcal Atomic # 8 Polarization: -19.53 SS G_CDS: -0.30 Total: -19.83 kcal Atomic # 14 Polarization: 19.46 SS G_CDS: -4.68 Total: 14.79 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -27.47 -9.59 -37.06 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047198489.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.972 kcal (2) G-P(sol) polarization free energy of solvation -27.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.058 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds