Wall clock time and date at job start Wed Apr 1 2020 03:24:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42909 * 1 3 3 C 1.42903 * 113.99660 * 2 1 4 4 C 1.50703 * 109.46673 * 180.02562 * 3 2 1 5 5 C 1.38360 * 119.85340 * 89.99834 * 4 3 2 6 6 C 1.37957 * 120.14684 * 180.02562 * 5 4 3 7 7 C 1.39573 * 119.84838 * 0.02562 * 6 5 4 8 8 C 1.47848 * 120.14196 * 179.97438 * 7 6 5 9 9 O 1.21549 * 120.00253 * 5.35697 * 8 7 6 10 10 N 1.34786 * 120.00072 * 185.35484 * 8 7 6 11 11 C 1.46500 * 119.99759 * 182.49201 * 10 8 7 12 12 H 1.08999 * 109.32223 * 51.34835 * 11 10 8 13 13 C 1.53028 * 109.32635 * 291.69822 * 11 10 8 14 14 C 1.53969 * 108.83272 * 295.32286 * 13 11 10 15 15 H 1.09005 * 113.67413 * 168.55789 * 14 13 11 16 16 C 1.55428 * 106.41516 * 293.82543 * 14 13 11 17 17 C 1.55168 * 100.35395 * 73.37141 * 16 14 13 18 18 H 1.09002 * 112.48051 * 162.66750 * 17 16 14 19 19 C 1.52991 * 109.17854 * 170.90261 * 11 10 8 20 20 N 1.47788 * 104.25607 * 40.55271 * 17 16 14 21 21 C 1.36934 * 125.85943 * 153.27513 * 20 17 16 22 22 H 1.08001 * 120.00157 * 9.21164 * 21 20 17 23 23 C 1.38813 * 120.00296 * 189.21739 * 21 20 17 24 24 N 1.31624 * 119.99654 * 356.51572 * 23 21 20 25 25 Si 1.86790 * 120.00203 * 176.51549 * 23 21 20 26 26 H 1.48504 * 109.47374 * 89.99900 * 25 23 21 27 27 H 1.48503 * 109.47474 * 209.99560 * 25 23 21 28 28 H 1.48498 * 109.47462 * 330.00041 * 25 23 21 29 29 C 1.47083 * 108.28674 * 333.53694 * 20 17 16 30 30 C 1.39575 * 119.71819 * 0.25698 * 7 6 5 31 31 C 1.37967 * 119.84682 * 359.46430 * 30 7 6 32 32 H 1.08997 * 109.47063 * 59.99699 * 1 2 3 33 33 H 1.08999 * 109.46774 * 180.02562 * 1 2 3 34 34 H 1.09002 * 109.46836 * 300.00011 * 1 2 3 35 35 H 1.08992 * 109.47275 * 60.00136 * 3 2 1 36 36 H 1.09002 * 109.47106 * 299.99702 * 3 2 1 37 37 H 1.08003 * 119.92495 * 0.02562 * 5 4 3 38 38 H 1.07991 * 120.07819 * 180.02562 * 6 5 4 39 39 H 0.97001 * 119.99758 * 2.49512 * 10 8 7 40 40 H 1.09001 * 109.57711 * 175.51929 * 13 11 10 41 41 H 1.09000 * 109.57668 * 55.12625 * 13 11 10 42 42 H 1.09005 * 111.22945 * 315.59712 * 16 14 13 43 43 H 1.09000 * 111.27367 * 191.16812 * 16 14 13 44 44 H 1.09001 * 109.53024 * 305.19924 * 19 11 10 45 45 H 1.08990 * 109.53519 * 184.97391 * 19 11 10 46 46 H 0.97006 * 119.99643 * 180.02562 * 24 23 21 47 47 H 1.08999 * 109.97689 * 120.45468 * 29 20 17 48 48 H 1.08999 * 109.97753 * 241.73968 * 29 20 17 49 49 H 1.07993 * 120.08045 * 179.72597 * 30 7 6 50 50 H 1.07998 * 119.92818 * 180.27560 * 31 30 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5126 1.1865 -0.0006 5 6 4.1987 1.1323 -1.2009 6 6 5.5739 1.0228 -1.2086 7 6 6.2729 0.9662 -0.0019 8 6 7.7467 0.8483 -0.0025 9 8 8.3600 0.8984 -1.0507 10 7 8.4103 0.6852 1.1593 11 6 9.8739 0.6232 1.1644 12 1 10.2731 1.4791 0.6203 13 6 10.3284 -0.6683 0.4810 14 6 9.8506 -1.8687 1.3185 15 1 9.9564 -2.8270 0.8101 16 6 10.6248 -1.8011 2.6645 17 6 9.9038 -0.6054 3.3413 18 1 10.0808 -0.5661 4.4162 19 6 10.3737 0.6643 2.6098 20 7 8.4773 -0.8065 3.0112 21 6 7.4128 -0.3635 3.7499 22 1 7.5736 0.3104 4.5785 23 6 6.1271 -0.7805 3.4340 24 7 5.9233 -1.5466 2.3832 25 14 4.6862 -0.2547 4.5000 26 1 4.1307 1.0231 3.9862 27 1 3.6343 -1.3022 4.4624 28 1 5.1478 -0.0667 5.8988 29 6 8.3971 -1.5695 1.7564 30 6 5.5743 1.0154 1.2055 31 6 4.1995 1.1307 1.1990 32 1 -0.3633 0.5139 -0.8899 33 1 -0.3633 -1.0277 0.0005 34 1 -0.3633 0.5139 0.8900 35 1 1.6887 1.8464 0.8899 36 1 1.6886 1.8464 -0.8900 37 1 3.6564 1.1758 -2.1339 38 1 6.1083 0.9810 -2.1461 39 1 7.9186 0.6090 1.9921 40 1 11.4162 -0.6815 0.4114 41 1 9.8959 -0.7247 -0.5179 42 1 11.6808 -1.5847 2.5021 43 1 10.4965 -2.7172 3.2410 44 1 9.9693 1.5440 3.1104 45 1 11.4627 0.7075 2.6178 46 1 5.0248 -1.8378 2.1622 47 1 7.8586 -2.5026 1.9217 48 1 7.8923 -0.9781 0.9925 49 1 6.1090 0.9676 2.1425 50 1 3.6580 1.1734 2.1325 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001047198489.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:24:04 Heat of formation + Delta-G solvation = 16.610822 kcal Electronic energy + Delta-G solvation = -32960.740659 eV Core-core repulsion = 28955.351568 eV Total energy + Delta-G solvation = -4005.389091 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.37965 -40.47570 -39.24867 -38.24852 -35.55566 -34.87258 -33.07827 -32.42691 -31.88564 -31.74756 -29.51235 -28.23247 -27.03553 -26.46433 -24.85446 -23.83997 -23.48953 -22.56766 -21.39038 -20.90722 -20.24180 -19.17950 -18.37189 -17.44710 -17.31098 -16.99371 -16.78959 -16.62831 -16.28834 -15.92199 -15.61697 -15.33188 -15.25056 -14.91748 -14.61791 -14.28291 -14.02075 -13.86701 -13.79124 -13.44059 -13.36381 -13.27666 -13.16202 -13.11126 -13.01017 -12.66331 -12.54562 -12.38248 -12.24505 -12.09066 -11.98615 -11.85301 -11.61921 -11.32604 -11.07753 -10.92520 -10.67950 -10.57287 -10.53058 -9.82597 -9.76037 -9.03456 -8.70806 -7.78450 -5.17840 -0.07252 0.55805 1.40912 1.49971 1.54234 1.95919 2.45525 2.62377 2.85835 3.26832 3.33784 3.66070 3.81504 3.85485 3.88596 4.00275 4.08238 4.08648 4.18431 4.28844 4.36144 4.38032 4.47796 4.47856 4.50451 4.54195 4.58002 4.66816 4.77067 4.81159 4.83109 4.88411 4.91926 4.97011 5.08846 5.13622 5.15572 5.28350 5.37657 5.41510 5.44245 5.52502 5.56087 5.61563 5.62299 5.83983 5.92332 5.96805 6.03061 6.21049 6.24269 7.01703 7.15479 7.60488 7.78475 8.47727 9.22496 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.013492 B = 0.004821 C = 0.003925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2074.758524 B = 5806.917862 C = 7131.976609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.416 6.416 3 C 0.104 3.896 4 C -0.075 4.075 5 C -0.117 4.117 6 C -0.076 4.076 7 C -0.146 4.146 8 C 0.539 3.461 9 O -0.598 6.598 10 N -0.689 5.689 11 C 0.150 3.850 12 H 0.063 0.937 13 C -0.114 4.114 14 C -0.120 4.120 15 H 0.078 0.922 16 C -0.114 4.114 17 C 0.140 3.860 18 H 0.075 0.925 19 C -0.130 4.130 20 N -0.606 5.606 21 C -0.267 4.267 22 H 0.085 0.915 23 C -0.021 4.021 24 N -0.901 5.901 25 Si 0.925 3.075 26 H -0.260 1.260 27 H -0.305 1.305 28 H -0.279 1.279 29 C 0.153 3.847 30 C -0.051 4.051 31 C -0.133 4.133 32 H 0.062 0.938 33 H 0.091 0.909 34 H 0.049 0.951 35 H 0.066 0.934 36 H 0.087 0.913 37 H 0.155 0.845 38 H 0.132 0.868 39 H 0.433 0.567 40 H 0.092 0.908 41 H 0.045 0.955 42 H 0.098 0.902 43 H 0.054 0.946 44 H 0.059 0.941 45 H 0.105 0.895 46 H 0.246 0.754 47 H 0.000 1.000 48 H 0.056 0.944 49 H 0.136 0.864 50 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.565 6.089 -2.600 6.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.336 6.336 3 C 0.028 3.972 4 C -0.076 4.076 5 C -0.135 4.135 6 C -0.095 4.095 7 C -0.149 4.149 8 C 0.328 3.672 9 O -0.483 6.483 10 N -0.353 5.353 11 C 0.045 3.955 12 H 0.081 0.919 13 C -0.153 4.153 14 C -0.139 4.139 15 H 0.097 0.903 16 C -0.152 4.152 17 C 0.034 3.966 18 H 0.093 0.907 19 C -0.169 4.169 20 N -0.333 5.333 21 C -0.395 4.395 22 H 0.103 0.897 23 C -0.219 4.219 24 N -0.546 5.546 25 Si 0.754 3.246 26 H -0.186 1.186 27 H -0.232 1.232 28 H -0.204 1.204 29 C 0.028 3.972 30 C -0.069 4.069 31 C -0.151 4.151 32 H 0.080 0.920 33 H 0.109 0.891 34 H 0.068 0.932 35 H 0.084 0.916 36 H 0.105 0.895 37 H 0.172 0.828 38 H 0.149 0.851 39 H 0.288 0.712 40 H 0.110 0.890 41 H 0.064 0.936 42 H 0.116 0.884 43 H 0.073 0.927 44 H 0.077 0.923 45 H 0.123 0.877 46 H 0.056 0.944 47 H 0.018 0.982 48 H 0.074 0.926 49 H 0.153 0.847 50 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -1.276 5.934 -3.196 6.859 hybrid contribution -1.490 -0.262 1.061 1.848 sum -2.766 5.672 -2.134 6.661 Atomic orbital electron populations 1.22963 0.79206 1.03733 1.01269 1.87993 1.21728 1.28206 1.95645 1.21451 0.88152 0.85053 1.02534 1.20003 0.95472 0.99009 0.93086 1.21103 0.93087 1.00983 0.98306 1.21296 0.94617 0.96538 0.97065 1.20089 0.93286 1.06506 0.95041 1.18553 0.87816 0.76522 0.84346 1.90585 1.70015 1.54892 1.32787 1.47662 1.08258 1.68030 1.11388 1.20893 0.80035 0.97242 0.97285 0.91868 1.21984 1.01184 0.94034 0.98055 1.22776 0.96937 0.97492 0.96669 0.90335 1.22936 0.99219 0.97933 0.95078 1.21901 0.83849 0.93584 0.97308 0.90654 1.22443 1.01781 0.99448 0.93255 1.45059 1.00823 1.63468 1.23939 1.19297 0.85314 1.23513 1.11404 0.89727 1.25276 0.98843 0.99410 0.98369 1.70172 1.20168 1.37859 1.26358 0.86031 0.80974 0.78119 0.79489 1.18563 1.23180 1.20444 1.21871 0.92418 0.94314 0.88552 1.21753 0.94830 0.92158 0.98206 1.21130 0.94134 1.01818 0.98051 0.91994 0.89072 0.93200 0.91575 0.89461 0.82786 0.85053 0.71196 0.88968 0.93641 0.88352 0.92740 0.92273 0.87719 0.94351 0.98184 0.92649 0.84691 0.86609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.48 11.01 113.37 1.25 1.73 16 2 O -0.42 -12.49 10.69 -148.98 -1.59 -14.08 16 3 C 0.10 2.76 6.06 71.24 0.43 3.19 16 4 C -0.08 -2.55 5.52 -19.81 -0.11 -2.66 16 5 C -0.12 -3.82 9.68 22.23 0.22 -3.61 16 6 C -0.08 -2.93 9.59 22.53 0.22 -2.71 16 7 C -0.15 -6.40 5.85 -20.09 -0.12 -6.52 16 8 C 0.54 24.73 5.94 86.79 0.52 25.24 16 9 O -0.60 -28.83 14.93 -3.87 -0.06 -28.89 16 10 N -0.69 -29.54 2.73 -445.37 -1.21 -30.75 16 11 C 0.15 5.43 2.75 45.00 0.12 5.56 16 12 H 0.06 2.25 8.09 -2.39 -0.02 2.23 16 13 C -0.11 -4.01 5.14 30.93 0.16 -3.85 16 14 C -0.12 -4.47 4.33 -9.05 -0.04 -4.51 16 15 H 0.08 2.85 8.14 -2.38 -0.02 2.83 16 16 C -0.11 -3.58 6.18 32.17 0.20 -3.38 16 17 C 0.14 4.91 4.30 45.78 0.20 5.11 16 18 H 0.08 2.54 8.14 -2.39 -0.02 2.52 16 19 C -0.13 -3.98 5.41 30.89 0.17 -3.81 16 20 N -0.61 -26.99 1.75 -664.45 -1.16 -28.16 16 21 C -0.27 -12.84 8.01 84.03 0.67 -12.17 16 22 H 0.08 3.93 7.83 -2.91 -0.02 3.91 16 23 C -0.02 -1.04 3.06 84.86 0.26 -0.78 16 24 N -0.90 -48.11 9.00 21.65 0.19 -47.91 16 25 Si 0.92 40.78 27.53 68.60 1.89 42.67 16 26 H -0.26 -10.61 5.72 99.48 0.57 -10.04 16 27 H -0.30 -14.34 7.11 99.48 0.71 -13.63 16 28 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 29 C 0.15 7.19 3.93 86.85 0.34 7.53 16 30 C -0.05 -2.21 7.09 22.53 0.16 -2.05 16 31 C -0.13 -5.26 9.17 22.23 0.20 -5.06 16 32 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 33 H 0.09 1.66 8.14 -2.39 -0.02 1.65 16 34 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 35 H 0.07 1.59 8.08 -2.39 -0.02 1.57 16 36 H 0.09 1.75 8.08 -2.39 -0.02 1.73 16 37 H 0.15 3.87 8.06 -2.91 -0.02 3.85 16 38 H 0.13 4.84 7.66 -2.92 -0.02 4.82 16 39 H 0.43 19.41 2.36 -92.71 -0.22 19.20 16 40 H 0.09 2.57 7.97 -2.39 -0.02 2.55 16 41 H 0.04 1.85 6.61 -2.39 -0.02 1.84 16 42 H 0.10 2.39 7.75 -2.38 -0.02 2.37 16 43 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 44 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 45 H 0.10 2.42 8.00 -2.39 -0.02 2.40 16 46 H 0.25 13.59 8.31 -92.70 -0.77 12.82 16 47 H 0.00 0.00 6.99 -2.39 -0.02 -0.02 16 48 H 0.06 2.84 3.64 -15.80 -0.06 2.78 16 49 H 0.14 6.32 3.24 -2.91 -0.01 6.31 16 50 H 0.12 4.53 5.74 -2.91 -0.02 4.51 16 Total: -1.00 -63.14 364.97 3.46 -59.68 By element: Atomic # 1 Polarization: 49.65 SS G_CDS: 0.56 Total: 50.20 kcal Atomic # 6 Polarization: -7.60 SS G_CDS: 4.84 Total: -2.75 kcal Atomic # 7 Polarization: -104.64 SS G_CDS: -2.18 Total: -106.83 kcal Atomic # 8 Polarization: -41.32 SS G_CDS: -1.65 Total: -42.97 kcal Atomic # 14 Polarization: 40.78 SS G_CDS: 1.89 Total: 42.67 kcal Total: -63.14 3.46 -59.68 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047198489.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.293 kcal (2) G-P(sol) polarization free energy of solvation -63.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.682 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds