Wall clock time and date at job start Wed Apr 1 2020 03:19:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42896 * 113.99935 * 2 1 4 4 C 1.50700 * 109.47307 * 179.97438 * 3 2 1 5 5 C 1.38384 * 119.92853 * 89.99953 * 4 3 2 6 6 C 1.38335 * 120.29594 * 179.97438 * 5 4 3 7 7 C 1.37977 * 120.14317 * 0.02562 * 6 5 4 8 8 C 1.39557 * 119.85426 * 359.97438 * 7 6 5 9 9 C 1.47844 * 120.14585 * 179.97438 * 8 7 6 10 10 O 1.21553 * 119.99939 * 321.06834 * 9 8 7 11 11 N 1.34775 * 120.00061 * 141.07225 * 9 8 7 12 12 C 1.45737 * 117.76293 * 354.22557 * 11 9 8 13 13 C 1.53051 * 109.55893 * 218.89467 * 12 11 9 14 14 C 1.52938 * 108.49554 * 306.19985 * 13 12 11 15 15 C 1.52301 * 109.85420 * 65.96386 * 14 13 12 16 16 H 1.09006 * 110.92319 * 66.60547 * 15 14 13 17 17 C 1.44193 * 117.76186 * 174.25054 * 11 9 8 18 18 H 1.08998 * 109.22326 * 27.36332 * 17 11 9 19 19 C 1.54062 * 111.76672 * 266.46336 * 17 11 9 20 20 C 1.54058 * 103.74300 * 206.73742 * 19 17 11 21 21 N 1.46883 * 107.70695 * 17.13070 * 20 19 17 22 22 C 1.36939 * 125.58378 * 182.96576 * 21 20 19 23 23 H 1.07993 * 119.99903 * 180.02562 * 22 21 20 24 24 C 1.38808 * 119.99818 * 0.02706 * 22 21 20 25 25 N 1.31629 * 120.00093 * 359.97438 * 24 22 21 26 26 Si 1.86800 * 120.00103 * 179.97438 * 24 22 21 27 27 H 1.48501 * 109.47264 * 179.97438 * 26 24 22 28 28 H 1.48499 * 109.47098 * 300.00277 * 26 24 22 29 29 H 1.48499 * 109.46774 * 60.00338 * 26 24 22 30 30 C 1.37936 * 119.93082 * 270.23540 * 4 3 2 31 31 H 1.08999 * 109.47033 * 299.99578 * 1 2 3 32 32 H 1.08996 * 109.47225 * 60.00388 * 1 2 3 33 33 H 1.09004 * 109.46764 * 180.02562 * 1 2 3 34 34 H 1.09000 * 109.47320 * 59.99475 * 3 2 1 35 35 H 1.09000 * 109.47116 * 299.99793 * 3 2 1 36 36 H 1.08004 * 119.85191 * 0.02562 * 5 4 3 37 37 H 1.08000 * 119.92774 * 180.02562 * 6 5 4 38 38 H 1.07999 * 120.07116 * 180.02562 * 7 6 5 39 39 H 1.09002 * 109.45538 * 338.92268 * 12 11 9 40 40 H 1.08996 * 109.45380 * 98.88472 * 12 11 9 41 41 H 1.09006 * 109.62918 * 65.89975 * 13 12 11 42 42 H 1.09001 * 109.62911 * 186.49455 * 13 12 11 43 43 H 1.08997 * 109.41795 * 186.09158 * 14 13 12 44 44 H 1.09009 * 109.41642 * 305.95521 * 14 13 12 45 45 H 1.08999 * 110.57409 * 88.17456 * 19 17 11 46 46 H 1.09002 * 110.69903 * 325.36111 * 19 17 11 47 47 H 1.08997 * 109.80880 * 257.58025 * 20 19 17 48 48 H 1.09001 * 109.81217 * 136.68108 * 20 19 17 49 49 H 0.96994 * 119.99919 * 179.97438 * 25 24 22 50 50 H 1.08005 * 120.06989 * 0.03378 * 30 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5125 1.1865 0.0006 5 6 4.2013 1.1318 -1.1984 6 6 5.5803 1.0232 -1.2067 7 6 6.2781 0.9681 -0.0176 8 6 5.5897 1.0228 1.1951 9 6 6.3309 0.9637 2.4729 10 8 7.2887 0.2240 2.5863 11 7 5.9446 1.7301 3.5121 12 6 4.8732 2.6916 3.2852 13 6 5.1785 3.9869 4.0411 14 6 5.4358 3.6428 5.5089 15 6 6.7068 2.8125 5.6304 16 1 7.5832 3.3997 5.3559 17 6 6.6201 1.5431 4.7722 18 1 7.6288 1.1737 4.5874 19 6 5.8740 0.5446 5.6777 20 6 6.2739 0.9730 7.1024 21 7 6.8178 2.3351 7.0232 22 6 7.3373 3.0478 8.0708 23 1 7.7137 4.0472 7.9100 24 6 7.3800 2.4857 9.3393 25 7 6.9207 1.2679 9.5353 26 14 8.0892 3.4577 10.7682 27 1 8.0194 2.6402 12.0060 28 1 9.5051 3.8001 10.4796 29 1 7.3063 4.7056 10.9550 30 6 4.1977 1.1275 1.1963 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5137 -0.8900 33 1 -0.3633 -1.0277 0.0005 34 1 1.6885 1.8464 0.8899 35 1 1.6886 1.8463 -0.8900 36 1 3.6598 1.1749 -2.1319 37 1 6.1119 0.9813 -2.1459 38 1 7.3548 0.8837 -0.0255 39 1 4.7952 2.9033 2.2187 40 1 3.9310 2.2762 3.6427 41 1 6.0635 4.4596 3.6151 42 1 4.3269 4.6633 3.9673 43 1 5.5481 4.5629 6.0825 44 1 4.5936 3.0722 5.9005 45 1 6.2041 -0.4747 5.4774 46 1 4.7961 0.6309 5.5402 47 1 7.0323 0.2944 7.4929 48 1 5.3980 0.9621 7.7511 49 1 6.9509 0.8750 10.4216 50 1 3.6586 1.1659 2.1314 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049581237.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:19:58 Heat of formation + Delta-G solvation = -14.723839 kcal Electronic energy + Delta-G solvation = -30959.968805 eV Core-core repulsion = 26953.220940 eV Total energy + Delta-G solvation = -4006.747864 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.88725 -39.36201 -38.07770 -37.43297 -35.44940 -32.64405 -32.53590 -32.30374 -31.22371 -28.95940 -28.30258 -27.60648 -25.62952 -25.21761 -24.40538 -23.27923 -22.39715 -21.69163 -20.29057 -19.84067 -18.30177 -17.39735 -16.93825 -16.79587 -16.63405 -16.22858 -15.93579 -15.35551 -15.25284 -14.77991 -14.61047 -14.21893 -14.18899 -13.91992 -13.68087 -13.40082 -13.08738 -12.99271 -12.71938 -12.64549 -12.43925 -12.07271 -11.96346 -11.83266 -11.72880 -11.41288 -11.28732 -11.03208 -10.90937 -10.75245 -10.64959 -10.50282 -10.12336 -10.10417 -10.05526 -9.65632 -9.59295 -9.57364 -9.12854 -9.04355 -8.58888 -8.30324 -6.85906 -5.70155 -3.05084 0.76423 1.03260 2.76173 3.12784 3.34338 3.41143 3.45472 3.46745 3.84873 4.35271 4.48537 4.49104 4.56683 4.79196 4.86203 4.91330 4.95569 5.01503 5.03982 5.10614 5.16075 5.27008 5.29502 5.33680 5.40312 5.46930 5.52736 5.60260 5.63610 5.70331 5.71142 5.89803 5.99914 6.08718 6.10079 6.15924 6.21585 6.24628 6.30667 6.39045 6.58519 6.59009 6.61493 6.75377 6.76489 6.98822 7.10432 7.52672 7.57526 7.65509 7.84301 8.25148 8.31954 9.21832 9.81613 10.46673 11.40634 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.017917 B = 0.002660 C = 0.002533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1562.381556 B =10524.588970 C =11050.109789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.385 6.385 3 C 0.103 3.897 4 C -0.102 4.102 5 C -0.080 4.080 6 C -0.129 4.129 7 C -0.060 4.060 8 C -0.124 4.124 9 C 0.549 3.451 10 O -0.533 6.533 11 N -0.580 5.580 12 C 0.105 3.895 13 C -0.132 4.132 14 C -0.130 4.130 15 C 0.162 3.838 16 H 0.054 0.946 17 C 0.134 3.866 18 H 0.094 0.906 19 C -0.151 4.151 20 C 0.180 3.820 21 N -0.596 5.596 22 C -0.228 4.228 23 H 0.077 0.923 24 C -0.006 4.006 25 N -0.920 5.920 26 Si 0.912 3.088 27 H -0.290 1.290 28 H -0.285 1.285 29 H -0.286 1.286 30 C -0.067 4.067 31 H 0.043 0.957 32 H 0.041 0.959 33 H 0.087 0.913 34 H 0.061 0.939 35 H 0.059 0.941 36 H 0.126 0.874 37 H 0.130 0.870 38 H 0.133 0.867 39 H 0.083 0.917 40 H 0.062 0.938 41 H 0.065 0.935 42 H 0.071 0.929 43 H 0.064 0.936 44 H 0.062 0.938 45 H 0.062 0.938 46 H 0.055 0.945 47 H 0.053 0.947 48 H 0.040 0.960 49 H 0.253 0.747 50 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.799 2.334 -22.937 25.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.304 6.304 3 C 0.027 3.973 4 C -0.103 4.103 5 C -0.098 4.098 6 C -0.147 4.147 7 C -0.079 4.079 8 C -0.128 4.128 9 C 0.336 3.664 10 O -0.410 6.410 11 N -0.311 5.311 12 C -0.018 4.018 13 C -0.171 4.171 14 C -0.170 4.170 15 C 0.053 3.947 16 H 0.072 0.928 17 C 0.030 3.970 18 H 0.112 0.888 19 C -0.190 4.190 20 C 0.055 3.945 21 N -0.320 5.320 22 C -0.356 4.356 23 H 0.095 0.905 24 C -0.203 4.203 25 N -0.568 5.568 26 Si 0.743 3.257 27 H -0.216 1.216 28 H -0.211 1.211 29 H -0.212 1.212 30 C -0.085 4.085 31 H 0.062 0.938 32 H 0.060 0.940 33 H 0.105 0.895 34 H 0.079 0.921 35 H 0.078 0.922 36 H 0.143 0.857 37 H 0.148 0.852 38 H 0.151 0.849 39 H 0.101 0.899 40 H 0.081 0.919 41 H 0.084 0.916 42 H 0.089 0.911 43 H 0.082 0.918 44 H 0.081 0.919 45 H 0.081 0.919 46 H 0.074 0.926 47 H 0.071 0.929 48 H 0.058 0.942 49 H 0.063 0.937 50 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -11.132 1.742 -22.537 25.197 hybrid contribution -0.031 0.685 0.859 1.100 sum -11.163 2.427 -21.677 24.503 Atomic orbital electron populations 1.22775 0.80823 1.03002 1.00053 1.87995 1.19723 1.27270 1.95409 1.21338 0.89525 0.85292 1.01160 1.19472 0.94172 1.03357 0.93257 1.21192 0.94315 0.96824 0.97451 1.21097 0.94091 1.01424 0.98086 1.21275 1.00656 0.95052 0.90889 1.19967 0.93833 1.04987 0.93977 1.18474 0.83685 0.80723 0.83476 1.90781 1.27399 1.39689 1.83168 1.46979 1.36672 1.37124 1.10338 1.21809 0.89788 0.89659 1.00540 1.21868 1.01796 0.95951 0.97472 1.21997 1.00358 1.01109 0.93552 1.20818 0.95467 0.92065 0.86341 0.92807 1.21209 0.96881 0.97328 0.81575 0.88770 1.22997 0.99196 0.98453 0.98360 1.21055 0.98062 0.86188 0.89184 1.44494 1.71767 1.13574 1.02175 1.18962 1.33290 0.97174 0.86172 0.90469 1.24804 1.01259 0.96731 0.97484 1.69963 1.51223 1.14090 1.21476 0.86196 0.78881 0.78767 0.81872 1.21624 1.21148 1.21218 1.21418 0.92959 0.95757 0.98410 0.93823 0.94043 0.89469 0.92101 0.92240 0.85652 0.85182 0.84932 0.89860 0.91944 0.91625 0.91059 0.91775 0.91945 0.91941 0.92605 0.92901 0.94179 0.93669 0.84793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 11.01 101.05 1.11 1.30 16 2 O -0.38 -3.79 10.69 -35.23 -0.38 -4.16 16 3 C 0.10 0.82 6.06 36.01 0.22 1.04 16 4 C -0.10 -0.99 5.50 -104.68 -0.58 -1.56 16 5 C -0.08 -0.69 9.69 -39.49 -0.38 -1.07 16 6 C -0.13 -1.16 10.03 -39.64 -0.40 -1.55 16 7 C -0.06 -0.69 9.63 -39.19 -0.38 -1.06 16 8 C -0.12 -1.63 4.93 -104.97 -0.52 -2.14 16 9 C 0.55 9.04 7.24 -12.33 -0.09 8.95 16 10 O -0.53 -10.72 16.17 5.32 0.09 -10.63 16 11 N -0.58 -9.23 2.80 -168.54 -0.47 -9.70 16 12 C 0.10 1.30 4.66 -4.43 -0.02 1.28 16 13 C -0.13 -1.71 6.10 -26.74 -0.16 -1.87 16 14 C -0.13 -2.25 5.30 -27.12 -0.14 -2.40 16 15 C 0.16 3.30 3.25 -67.41 -0.22 3.08 16 16 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 17 C 0.13 2.58 2.79 -68.36 -0.19 2.39 16 18 H 0.09 2.03 7.02 -51.93 -0.36 1.66 16 19 C -0.15 -3.04 6.44 -25.62 -0.17 -3.21 16 20 C 0.18 4.44 5.39 -3.28 -0.02 4.43 16 21 N -0.60 -14.98 2.95 -163.97 -0.48 -15.47 16 22 C -0.23 -6.25 10.27 -15.06 -0.15 -6.41 16 23 H 0.08 2.04 7.83 -52.49 -0.41 1.63 16 24 C -0.01 -0.18 5.49 -17.43 -0.10 -0.27 16 25 N -0.92 -27.04 10.29 55.49 0.57 -26.47 16 26 Si 0.91 22.08 29.55 -169.99 -5.02 17.06 16 27 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 28 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 29 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 30 C -0.07 -0.75 7.15 -39.19 -0.28 -1.03 16 31 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 32 H 0.04 0.20 8.14 -51.93 -0.42 -0.22 16 33 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.06 0.42 8.08 -51.93 -0.42 0.00 16 35 H 0.06 0.36 8.09 -51.93 -0.42 -0.06 16 36 H 0.13 0.79 8.06 -52.48 -0.42 0.37 16 37 H 0.13 0.83 8.06 -52.49 -0.42 0.41 16 38 H 0.13 1.49 8.05 -52.49 -0.42 1.07 16 39 H 0.08 0.88 5.34 -51.93 -0.28 0.60 16 40 H 0.06 0.72 7.23 -51.93 -0.38 0.35 16 41 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 42 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 43 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 44 H 0.06 1.15 8.01 -51.92 -0.42 0.74 16 45 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 46 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 47 H 0.05 1.46 7.25 -51.93 -0.38 1.08 16 48 H 0.04 1.08 7.60 -51.93 -0.39 0.68 16 49 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 50 H 0.13 1.43 5.93 -52.48 -0.31 1.12 16 LS Contribution 392.83 15.07 5.92 5.92 Total: -1.00 -32.97 392.83 -10.21 -43.18 By element: Atomic # 1 Polarization: 8.36 SS G_CDS: -7.97 Total: 0.38 kcal Atomic # 6 Polarization: 2.36 SS G_CDS: -2.46 Total: -0.10 kcal Atomic # 7 Polarization: -51.25 SS G_CDS: -0.38 Total: -51.64 kcal Atomic # 8 Polarization: -14.51 SS G_CDS: -0.29 Total: -14.80 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -32.97 -10.21 -43.18 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049581237.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.455 kcal (2) G-P(sol) polarization free energy of solvation -32.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds