Wall clock time and date at job start Wed Apr 1 2020 03:18:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42900 * 114.00316 * 2 1 4 4 C 1.50700 * 109.47352 * 180.02562 * 3 2 1 5 5 C 1.38257 * 119.99716 * 90.00498 * 4 3 2 6 6 C 1.38214 * 119.99782 * 179.97438 * 5 4 3 7 7 C 1.38258 * 119.99906 * 0.26902 * 6 5 4 8 8 C 1.38220 * 119.99911 * 359.51986 * 7 6 5 9 9 C 1.50697 * 120.00001 * 180.25158 * 8 7 6 10 10 C 1.50699 * 109.47250 * 270.21258 * 9 8 7 11 11 O 1.21284 * 119.99893 * 359.97438 * 10 9 8 12 12 N 1.34778 * 120.00231 * 180.02562 * 10 9 8 13 13 C 1.46496 * 119.99792 * 179.97438 * 12 10 9 14 14 H 1.09000 * 110.56317 * 36.97434 * 13 12 10 15 15 C 1.54853 * 110.62359 * 160.04634 * 13 12 10 16 16 C 1.55847 * 103.44885 * 118.49193 * 15 13 12 17 17 H 1.08997 * 116.12964 * 159.14880 * 16 15 13 18 18 C 1.55849 * 105.05812 * 288.17696 * 16 15 13 19 19 C 1.54848 * 103.44969 * 71.82473 * 18 16 15 20 20 C 1.55842 * 110.63074 * 274.07004 * 13 12 10 21 21 H 1.08994 * 115.56378 * 82.69818 * 20 13 12 22 22 N 1.50240 * 101.05509 * 208.57691 * 20 13 12 23 23 C 1.36937 * 130.83937 * 233.98823 * 22 20 13 24 24 H 1.07996 * 119.99617 * 359.97438 * 23 22 20 25 25 C 1.38810 * 119.99921 * 179.97438 * 23 22 20 26 26 N 1.31620 * 120.00300 * 0.02562 * 25 23 22 27 27 Si 1.86796 * 119.99849 * 180.02562 * 25 23 22 28 28 H 1.48506 * 109.47247 * 90.00066 * 27 25 23 29 29 H 1.48498 * 109.47138 * 210.00166 * 27 25 23 30 30 H 1.48498 * 109.47104 * 330.00235 * 27 25 23 31 31 C 1.38210 * 119.99983 * 270.02487 * 4 3 2 32 32 H 1.08997 * 109.46968 * 59.99622 * 1 2 3 33 33 H 1.09004 * 109.46928 * 179.97438 * 1 2 3 34 34 H 1.08999 * 109.47039 * 299.99746 * 1 2 3 35 35 H 1.09001 * 109.46908 * 60.00063 * 3 2 1 36 36 H 1.09001 * 109.47053 * 300.00571 * 3 2 1 37 37 H 1.07997 * 120.00319 * 359.97438 * 5 4 3 38 38 H 1.08001 * 120.00090 * 180.02562 * 6 5 4 39 39 H 1.08001 * 120.00315 * 179.72389 * 7 6 5 40 40 H 1.09004 * 109.47270 * 30.20617 * 9 8 7 41 41 H 1.08992 * 109.47419 * 150.20723 * 9 8 7 42 42 H 0.96992 * 119.99586 * 359.97438 * 12 10 9 43 43 H 1.09010 * 110.62434 * 236.97924 * 15 13 12 44 44 H 1.08999 * 110.63037 * 359.97438 * 15 13 12 45 45 H 1.09000 * 110.61956 * 190.31462 * 18 16 15 46 46 H 1.09003 * 110.62552 * 313.16724 * 18 16 15 47 47 H 1.08997 * 110.62535 * 241.50995 * 19 18 16 48 48 H 1.09000 * 110.62847 * 118.48444 * 19 18 16 49 49 H 0.97000 * 120.00183 * 180.02562 * 26 25 23 50 50 H 1.08000 * 120.00265 * 359.97438 * 31 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5126 1.1864 -0.0006 5 6 4.2012 1.1321 -1.1983 6 6 5.5791 1.0235 -1.1989 7 6 6.2683 0.9635 -0.0019 8 6 5.5802 1.0222 1.1955 9 6 6.3318 0.9625 2.5002 10 6 6.4704 -0.4738 2.9349 11 8 6.0042 -1.3615 2.2526 12 7 7.1115 -0.7717 4.0824 13 6 7.2457 -2.1679 4.5052 14 1 7.4059 -2.8153 3.6430 15 6 8.3988 -2.3198 5.5275 16 6 7.6815 -2.8452 6.8075 17 1 8.3122 -3.3534 7.5369 18 6 6.8752 -1.6263 7.3490 19 6 5.7221 -1.4744 6.3267 20 6 5.9887 -2.6222 5.3066 21 1 5.1361 -2.9374 4.7053 22 7 6.5822 -3.6718 6.2028 23 6 6.2301 -4.9795 6.4057 24 1 5.3947 -5.4033 5.8683 25 6 6.9469 -5.7602 7.3020 26 7 7.9648 -5.2436 7.9573 27 14 6.4670 -7.5442 7.5782 28 1 7.2024 -8.4087 6.6205 29 1 6.8114 -7.9401 8.9674 30 1 5.0058 -7.7022 7.3663 31 6 4.2019 1.1311 1.1960 32 1 -0.3633 0.5139 -0.8899 33 1 -0.3633 -1.0277 -0.0005 34 1 -0.3633 0.5138 0.8900 35 1 1.6887 1.8463 0.8900 36 1 1.6886 1.8464 -0.8899 37 1 3.6625 1.1746 -2.1334 38 1 6.1170 0.9815 -2.1344 39 1 7.3446 0.8742 -0.0023 40 1 7.3218 1.3996 2.3696 41 1 5.7855 1.5210 3.2602 42 1 7.4840 -0.0617 4.6282 43 1 9.1325 -3.0443 5.1739 44 1 8.8711 -1.3565 5.7197 45 1 6.4816 -1.8375 8.3433 46 1 7.4973 -0.7314 7.3658 47 1 5.7714 -0.5035 5.8338 48 1 4.7566 -1.6103 6.8140 49 1 8.4659 -5.7893 8.5834 50 1 3.6640 1.1736 2.1316 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001096324929.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:18:02 Heat of formation + Delta-G solvation = -8.442469 kcal Electronic energy + Delta-G solvation = -30154.451608 eV Core-core repulsion = 26147.976125 eV Total energy + Delta-G solvation = -4006.475483 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.22190 -39.50906 -38.27298 -37.58929 -33.84972 -33.17481 -32.28629 -31.79639 -29.39767 -29.04222 -28.32247 -27.47873 -26.78751 -25.50531 -24.15411 -22.40128 -21.62997 -21.06898 -20.13814 -19.43547 -18.51940 -17.19603 -16.77698 -16.66008 -16.53741 -16.29333 -15.71804 -15.38149 -15.23274 -14.89135 -14.67334 -14.25909 -14.11624 -13.80499 -13.57087 -13.22935 -12.78747 -12.60307 -12.53872 -12.33749 -12.24752 -11.92653 -11.71199 -11.63224 -11.48228 -11.17373 -11.04576 -11.00565 -10.88394 -10.86609 -10.80805 -10.19169 -10.06944 -9.93383 -9.81635 -9.61397 -9.34322 -9.23066 -8.91566 -8.91067 -8.73410 -8.44643 -6.88816 -5.70683 -3.08362 1.17751 1.31393 2.94345 3.29770 3.41809 3.46826 3.48383 3.66849 4.02749 4.48124 4.51607 4.62927 4.73324 4.94720 4.98114 5.04865 5.10027 5.13252 5.14557 5.20343 5.24621 5.37796 5.39749 5.41034 5.45278 5.54289 5.61385 5.83844 5.87442 5.90642 5.96352 5.99875 6.09686 6.14109 6.33760 6.34901 6.36472 6.44140 6.50564 6.56368 6.62835 6.72738 6.85308 6.87987 6.93144 7.00034 7.03186 7.30005 7.55440 7.77660 7.90407 8.19322 8.59002 9.13006 9.75395 10.55990 11.39077 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.013281 B = 0.002544 C = 0.002317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2107.826691 B =11004.631066 C =12080.781136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.382 6.382 3 C 0.104 3.896 4 C -0.095 4.095 5 C -0.101 4.101 6 C -0.123 4.123 7 C -0.097 4.097 8 C -0.063 4.063 9 C -0.104 4.104 10 C 0.507 3.493 11 O -0.531 6.531 12 N -0.714 5.714 13 C 0.129 3.871 14 H 0.080 0.920 15 C -0.140 4.140 16 C 0.154 3.846 17 H 0.154 0.846 18 C -0.137 4.137 19 C -0.129 4.129 20 C 0.128 3.872 21 H 0.084 0.916 22 N -0.591 5.591 23 C -0.208 4.208 24 H 0.079 0.921 25 C -0.013 4.013 26 N -0.925 5.925 27 Si 0.916 3.084 28 H -0.289 1.289 29 H -0.291 1.291 30 H -0.282 1.282 31 C -0.081 4.081 32 H 0.039 0.961 33 H 0.087 0.913 34 H 0.041 0.959 35 H 0.057 0.943 36 H 0.056 0.944 37 H 0.120 0.880 38 H 0.122 0.878 39 H 0.121 0.879 40 H 0.100 0.900 41 H 0.100 0.900 42 H 0.394 0.606 43 H 0.064 0.936 44 H 0.054 0.946 45 H 0.054 0.946 46 H 0.045 0.955 47 H 0.051 0.949 48 H 0.049 0.951 49 H 0.253 0.747 50 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.757 19.625 -13.614 24.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.301 6.301 3 C 0.028 3.972 4 C -0.095 4.095 5 C -0.119 4.119 6 C -0.141 4.141 7 C -0.115 4.115 8 C -0.063 4.063 9 C -0.144 4.144 10 C 0.292 3.708 11 O -0.407 6.407 12 N -0.366 5.366 13 C 0.023 3.977 14 H 0.098 0.902 15 C -0.180 4.180 16 C 0.047 3.953 17 H 0.171 0.829 18 C -0.177 4.177 19 C -0.169 4.169 20 C 0.019 3.981 21 H 0.103 0.897 22 N -0.311 5.311 23 C -0.336 4.336 24 H 0.097 0.903 25 C -0.208 4.208 26 N -0.573 5.573 27 Si 0.747 3.253 28 H -0.217 1.217 29 H -0.217 1.217 30 H -0.208 1.208 31 C -0.099 4.099 32 H 0.058 0.942 33 H 0.106 0.894 34 H 0.060 0.940 35 H 0.075 0.925 36 H 0.074 0.926 37 H 0.138 0.862 38 H 0.140 0.860 39 H 0.139 0.861 40 H 0.118 0.882 41 H 0.119 0.881 42 H 0.228 0.772 43 H 0.083 0.917 44 H 0.072 0.928 45 H 0.073 0.927 46 H 0.063 0.937 47 H 0.069 0.931 48 H 0.068 0.932 49 H 0.064 0.936 50 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -5.968 18.467 -13.952 23.902 hybrid contribution -0.292 -0.330 0.388 0.587 sum -6.260 18.137 -13.565 23.498 Atomic orbital electron populations 1.22767 0.81073 1.03007 0.99790 1.88047 1.19495 1.27188 1.95328 1.21324 0.90009 0.85264 1.00620 1.19476 0.93819 1.02602 0.93564 1.20970 0.94318 0.99398 0.97220 1.21052 0.94185 1.00882 0.97952 1.21015 0.99875 0.98681 0.91974 1.19266 0.93456 0.99735 0.93862 1.20706 1.02159 0.95545 0.96016 1.20403 0.78588 0.90604 0.81178 1.90748 1.47102 1.48978 1.53858 1.46247 1.57530 1.09599 1.23195 1.22605 0.98010 0.79989 0.97117 0.90162 1.23281 0.96505 0.99564 0.98649 1.23761 0.90174 0.87980 0.93371 0.82894 1.23053 0.97420 0.98650 0.98531 1.22889 0.98443 0.97810 0.97728 1.23193 0.94237 0.89101 0.91526 0.89748 1.46489 1.32841 1.06843 1.44928 1.19074 1.11117 0.84262 1.19177 0.90328 1.24689 0.98185 0.98474 0.99463 1.69434 1.21989 1.35013 1.30878 0.86028 0.77831 0.84325 0.77089 1.21654 1.21704 1.20753 1.20846 0.93402 0.98170 0.97517 0.94191 0.89446 0.94010 0.92509 0.92612 0.86235 0.85953 0.86127 0.88176 0.88141 0.77189 0.91692 0.92754 0.92735 0.93673 0.93087 0.93170 0.93602 0.86130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 11.01 101.05 1.11 1.37 16 2 O -0.38 -4.71 10.69 -35.23 -0.38 -5.09 16 3 C 0.10 1.04 6.06 36.01 0.22 1.26 16 4 C -0.09 -1.11 5.51 -104.63 -0.58 -1.68 16 5 C -0.10 -1.10 9.70 -39.58 -0.38 -1.48 16 6 C -0.12 -1.31 10.05 -39.58 -0.40 -1.70 16 7 C -0.10 -1.11 9.70 -39.58 -0.38 -1.50 16 8 C -0.06 -0.76 4.37 -104.62 -0.46 -1.22 16 9 C -0.10 -1.09 5.83 -29.04 -0.17 -1.26 16 10 C 0.51 7.62 7.82 -10.99 -0.09 7.54 16 11 O -0.53 -10.59 15.76 5.55 0.09 -10.50 16 12 N -0.71 -10.35 3.63 -51.40 -0.19 -10.54 16 13 C 0.13 2.43 3.08 -65.44 -0.20 2.23 16 14 H 0.08 1.73 7.70 -51.93 -0.40 1.33 16 15 C -0.14 -2.66 6.20 -24.23 -0.15 -2.81 16 16 C 0.15 3.47 4.72 -62.80 -0.30 3.17 16 17 H 0.15 3.95 5.52 -51.93 -0.29 3.66 16 18 C -0.14 -2.64 6.44 -24.24 -0.16 -2.79 16 19 C -0.13 -2.40 6.33 -24.23 -0.15 -2.55 16 20 C 0.13 2.75 5.35 -62.80 -0.34 2.42 16 21 H 0.08 1.92 8.14 -51.93 -0.42 1.50 16 22 N -0.59 -14.92 2.99 -145.81 -0.44 -15.35 16 23 C -0.21 -5.83 10.59 -15.06 -0.16 -5.99 16 24 H 0.08 2.18 7.83 -52.49 -0.41 1.76 16 25 C -0.01 -0.37 5.50 -17.43 -0.10 -0.46 16 26 N -0.92 -26.39 10.47 55.49 0.58 -25.81 16 27 Si 0.92 22.30 29.55 -169.99 -5.02 17.28 16 28 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 29 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 30 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 31 C -0.08 -1.00 9.36 -39.59 -0.37 -1.37 16 32 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16 33 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16 34 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 35 H 0.06 0.48 8.09 -51.93 -0.42 0.06 16 36 H 0.06 0.44 8.08 -51.93 -0.42 0.02 16 37 H 0.12 1.05 8.06 -52.49 -0.42 0.62 16 38 H 0.12 1.01 8.06 -52.49 -0.42 0.58 16 39 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 40 H 0.10 0.78 8.09 -51.93 -0.42 0.36 16 41 H 0.10 0.83 8.08 -51.93 -0.42 0.41 16 42 H 0.39 4.51 8.02 -40.82 -0.33 4.18 16 43 H 0.06 1.32 8.14 -51.92 -0.42 0.90 16 44 H 0.05 0.85 7.34 -51.93 -0.38 0.47 16 45 H 0.05 1.13 8.14 -51.93 -0.42 0.70 16 46 H 0.04 0.72 7.82 -51.93 -0.41 0.32 16 47 H 0.05 0.80 6.48 -51.93 -0.34 0.46 16 48 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 49 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 50 H 0.12 1.37 8.06 -52.49 -0.42 0.95 16 LS Contribution 402.60 15.07 6.07 6.07 Total: -1.00 -33.86 402.60 -10.34 -44.21 By element: Atomic # 1 Polarization: 14.60 SS G_CDS: -8.01 Total: 6.58 kcal Atomic # 6 Polarization: -3.79 SS G_CDS: -3.04 Total: -6.83 kcal Atomic # 7 Polarization: -51.66 SS G_CDS: -0.04 Total: -51.70 kcal Atomic # 8 Polarization: -15.31 SS G_CDS: -0.29 Total: -15.59 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.28 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -33.86 -10.34 -44.21 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001096324929.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.765 kcal (2) G-P(sol) polarization free energy of solvation -33.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds