Wall clock time and date at job start Wed Apr 1 2020 03:18:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42900 * 114.00316 * 2 1 4 4 C 1.50700 * 109.47352 * 180.02562 * 3 2 1 5 5 C 1.38257 * 119.99716 * 90.00498 * 4 3 2 6 6 C 1.38214 * 119.99782 * 179.97438 * 5 4 3 7 7 C 1.38258 * 119.99906 * 0.26902 * 6 5 4 8 8 C 1.38220 * 119.99911 * 359.51986 * 7 6 5 9 9 C 1.50697 * 120.00001 * 180.25158 * 8 7 6 10 10 C 1.50699 * 109.47250 * 270.21258 * 9 8 7 11 11 O 1.21284 * 119.99893 * 359.97438 * 10 9 8 12 12 N 1.34778 * 120.00231 * 180.02562 * 10 9 8 13 13 C 1.46496 * 119.99792 * 179.97438 * 12 10 9 14 14 H 1.09000 * 110.56317 * 36.97434 * 13 12 10 15 15 C 1.54853 * 110.62359 * 160.04634 * 13 12 10 16 16 C 1.55847 * 103.44885 * 118.49193 * 15 13 12 17 17 H 1.08997 * 116.12964 * 159.14880 * 16 15 13 18 18 C 1.55849 * 105.05812 * 288.17696 * 16 15 13 19 19 C 1.54848 * 103.44969 * 71.82473 * 18 16 15 20 20 C 1.55842 * 110.63074 * 274.07004 * 13 12 10 21 21 H 1.08994 * 115.56378 * 82.69818 * 20 13 12 22 22 N 1.50240 * 101.05509 * 208.57691 * 20 13 12 23 23 C 1.36937 * 130.83937 * 233.98823 * 22 20 13 24 24 H 1.07996 * 119.99617 * 359.97438 * 23 22 20 25 25 C 1.38810 * 119.99921 * 179.97438 * 23 22 20 26 26 N 1.31620 * 120.00300 * 0.02562 * 25 23 22 27 27 Si 1.86796 * 119.99849 * 180.02562 * 25 23 22 28 28 H 1.48506 * 109.47247 * 90.00066 * 27 25 23 29 29 H 1.48498 * 109.47138 * 210.00166 * 27 25 23 30 30 H 1.48498 * 109.47104 * 330.00235 * 27 25 23 31 31 C 1.38210 * 119.99983 * 270.02487 * 4 3 2 32 32 H 1.08997 * 109.46968 * 59.99622 * 1 2 3 33 33 H 1.09004 * 109.46928 * 179.97438 * 1 2 3 34 34 H 1.08999 * 109.47039 * 299.99746 * 1 2 3 35 35 H 1.09001 * 109.46908 * 60.00063 * 3 2 1 36 36 H 1.09001 * 109.47053 * 300.00571 * 3 2 1 37 37 H 1.07997 * 120.00319 * 359.97438 * 5 4 3 38 38 H 1.08001 * 120.00090 * 180.02562 * 6 5 4 39 39 H 1.08001 * 120.00315 * 179.72389 * 7 6 5 40 40 H 1.09004 * 109.47270 * 30.20617 * 9 8 7 41 41 H 1.08992 * 109.47419 * 150.20723 * 9 8 7 42 42 H 0.96992 * 119.99586 * 359.97438 * 12 10 9 43 43 H 1.09010 * 110.62434 * 236.97924 * 15 13 12 44 44 H 1.08999 * 110.63037 * 359.97438 * 15 13 12 45 45 H 1.09000 * 110.61956 * 190.31462 * 18 16 15 46 46 H 1.09003 * 110.62552 * 313.16724 * 18 16 15 47 47 H 1.08997 * 110.62535 * 241.50995 * 19 18 16 48 48 H 1.09000 * 110.62847 * 118.48444 * 19 18 16 49 49 H 0.97000 * 120.00183 * 180.02562 * 26 25 23 50 50 H 1.08000 * 120.00265 * 359.97438 * 31 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5126 1.1864 -0.0006 5 6 4.2012 1.1321 -1.1983 6 6 5.5791 1.0235 -1.1989 7 6 6.2683 0.9635 -0.0019 8 6 5.5802 1.0222 1.1955 9 6 6.3318 0.9625 2.5002 10 6 6.4704 -0.4738 2.9349 11 8 6.0042 -1.3615 2.2526 12 7 7.1115 -0.7717 4.0824 13 6 7.2457 -2.1679 4.5052 14 1 7.4059 -2.8153 3.6430 15 6 8.3988 -2.3198 5.5275 16 6 7.6815 -2.8452 6.8075 17 1 8.3122 -3.3534 7.5369 18 6 6.8752 -1.6263 7.3490 19 6 5.7221 -1.4744 6.3267 20 6 5.9887 -2.6222 5.3066 21 1 5.1361 -2.9374 4.7053 22 7 6.5822 -3.6718 6.2028 23 6 6.2301 -4.9795 6.4057 24 1 5.3947 -5.4033 5.8683 25 6 6.9469 -5.7602 7.3020 26 7 7.9648 -5.2436 7.9573 27 14 6.4670 -7.5442 7.5782 28 1 7.2024 -8.4087 6.6205 29 1 6.8114 -7.9401 8.9674 30 1 5.0058 -7.7022 7.3663 31 6 4.2019 1.1311 1.1960 32 1 -0.3633 0.5139 -0.8899 33 1 -0.3633 -1.0277 -0.0005 34 1 -0.3633 0.5138 0.8900 35 1 1.6887 1.8463 0.8900 36 1 1.6886 1.8464 -0.8899 37 1 3.6625 1.1746 -2.1334 38 1 6.1170 0.9815 -2.1344 39 1 7.3446 0.8742 -0.0023 40 1 7.3218 1.3996 2.3696 41 1 5.7855 1.5210 3.2602 42 1 7.4840 -0.0617 4.6282 43 1 9.1325 -3.0443 5.1739 44 1 8.8711 -1.3565 5.7197 45 1 6.4816 -1.8375 8.3433 46 1 7.4973 -0.7314 7.3658 47 1 5.7714 -0.5035 5.8338 48 1 4.7566 -1.6103 6.8140 49 1 8.4659 -5.7893 8.5834 50 1 3.6640 1.1736 2.1316 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001096324929.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:18:01 Heat of formation + Delta-G solvation = -28.941862 kcal Electronic energy + Delta-G solvation = -30155.340529 eV Core-core repulsion = 26147.976125 eV Total energy + Delta-G solvation = -4007.364404 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.52143 -40.58568 -39.53492 -38.45191 -35.40892 -34.26099 -33.94862 -32.59801 -31.01409 -30.79090 -29.66198 -28.34960 -27.91677 -26.23829 -26.07456 -23.37044 -22.83830 -22.32298 -21.48536 -20.91947 -20.12632 -18.94382 -17.98854 -17.61880 -17.30866 -17.08665 -16.84151 -16.74401 -16.49291 -16.31134 -16.03072 -15.73491 -15.18833 -15.09547 -14.80799 -14.19568 -14.03001 -13.85709 -13.53379 -13.48667 -13.34341 -13.24338 -13.18410 -12.92296 -12.79690 -12.73983 -12.60448 -12.35107 -12.33176 -12.00226 -11.96494 -11.90159 -11.80255 -11.54283 -11.18767 -11.04658 -10.79817 -10.77639 -10.66681 -9.93099 -9.74076 -9.58851 -8.85646 -7.80748 -5.19782 0.35102 0.47834 1.44610 1.46074 1.54231 1.78085 2.25510 2.49338 2.72908 3.25571 3.32634 3.53684 3.69776 3.86931 3.92731 3.99552 4.08554 4.14702 4.19586 4.22688 4.30280 4.36654 4.43483 4.46202 4.48156 4.51647 4.53672 4.61307 4.63116 4.68135 4.72871 4.79195 4.83142 4.83728 4.99202 5.08251 5.11701 5.16180 5.16972 5.28137 5.33831 5.47281 5.54065 5.57219 5.63246 5.67321 5.78901 5.90049 6.10232 6.22291 6.27999 6.74331 7.05414 7.44814 7.68342 8.54678 9.26057 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.013281 B = 0.002544 C = 0.002317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2107.826691 B =11004.631066 C =12080.781136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.419 6.419 3 C 0.102 3.898 4 C -0.111 4.111 5 C -0.111 4.111 6 C -0.130 4.130 7 C -0.112 4.112 8 C -0.080 4.080 9 C -0.092 4.092 10 C 0.507 3.493 11 O -0.586 6.586 12 N -0.699 5.699 13 C 0.148 3.852 14 H 0.045 0.955 15 C -0.124 4.124 16 C 0.137 3.863 17 H 0.120 0.880 18 C -0.125 4.125 19 C -0.114 4.114 20 C 0.117 3.883 21 H 0.058 0.942 22 N -0.620 5.620 23 C -0.226 4.226 24 H 0.067 0.933 25 C -0.062 4.062 26 N -0.943 5.943 27 Si 0.975 3.025 28 H -0.289 1.289 29 H -0.289 1.289 30 H -0.277 1.277 31 C -0.101 4.101 32 H 0.058 0.942 33 H 0.087 0.913 34 H 0.051 0.949 35 H 0.068 0.932 36 H 0.076 0.924 37 H 0.137 0.863 38 H 0.144 0.856 39 H 0.135 0.865 40 H 0.136 0.864 41 H 0.130 0.870 42 H 0.416 0.584 43 H 0.043 0.957 44 H 0.101 0.899 45 H 0.033 0.967 46 H 0.091 0.909 47 H 0.091 0.909 48 H 0.038 0.962 49 H 0.250 0.750 50 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.515 22.617 -14.128 27.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.339 6.339 3 C 0.026 3.974 4 C -0.111 4.111 5 C -0.129 4.129 6 C -0.148 4.148 7 C -0.130 4.130 8 C -0.080 4.080 9 C -0.131 4.131 10 C 0.295 3.705 11 O -0.465 6.465 12 N -0.352 5.352 13 C 0.041 3.959 14 H 0.064 0.936 15 C -0.164 4.164 16 C 0.032 3.968 17 H 0.137 0.863 18 C -0.164 4.164 19 C -0.153 4.153 20 C 0.009 3.991 21 H 0.076 0.924 22 N -0.342 5.342 23 C -0.355 4.355 24 H 0.085 0.915 25 C -0.255 4.255 26 N -0.593 5.593 27 Si 0.804 3.196 28 H -0.216 1.216 29 H -0.215 1.215 30 H -0.203 1.203 31 C -0.119 4.119 32 H 0.077 0.923 33 H 0.106 0.894 34 H 0.070 0.930 35 H 0.086 0.914 36 H 0.094 0.906 37 H 0.154 0.846 38 H 0.162 0.838 39 H 0.153 0.847 40 H 0.154 0.846 41 H 0.148 0.852 42 H 0.254 0.746 43 H 0.062 0.938 44 H 0.119 0.881 45 H 0.052 0.948 46 H 0.109 0.891 47 H 0.109 0.891 48 H 0.057 0.943 49 H 0.059 0.941 50 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -5.722 21.534 -14.462 26.563 hybrid contribution -0.416 -1.257 0.457 1.400 sum -6.138 20.277 -14.005 25.397 Atomic orbital electron populations 1.22928 0.79406 1.03556 1.01209 1.87983 1.21532 1.28755 1.95628 1.21447 0.89075 0.84693 1.02142 1.19809 0.94963 1.02553 0.93814 1.21276 0.94747 0.99050 0.97796 1.21398 0.94396 1.00163 0.98831 1.21325 1.00806 0.98640 0.92188 1.19524 0.93608 1.00006 0.94861 1.20741 1.04430 0.92035 0.95923 1.21258 0.76907 0.92155 0.80215 1.90742 1.49220 1.51147 1.55415 1.45971 1.57554 1.08078 1.23593 1.21990 0.96461 0.82091 0.95368 0.93644 1.23110 0.95716 1.01138 0.96433 1.23697 0.90044 0.88786 0.94307 0.86251 1.22947 0.97447 0.98793 0.97198 1.22794 0.97697 0.98252 0.96589 1.23316 0.94401 0.89361 0.92022 0.92395 1.46756 1.34314 1.06771 1.46382 1.19279 1.10932 0.86210 1.19095 0.91489 1.25392 0.98552 1.01884 0.99671 1.69660 1.22602 1.35798 1.31203 0.85125 0.77601 0.80172 0.76720 1.21633 1.21497 1.20266 1.21065 0.93954 0.98916 0.97965 0.92312 0.89438 0.93002 0.91416 0.90593 0.84551 0.83837 0.84728 0.84650 0.85175 0.74563 0.93792 0.88111 0.94777 0.89051 0.89060 0.94298 0.94076 0.85923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.39 11.01 113.37 1.25 1.64 16 2 O -0.42 -10.17 10.69 -148.98 -1.59 -11.76 16 3 C 0.10 1.93 6.06 71.24 0.43 2.36 16 4 C -0.11 -2.51 5.51 -19.87 -0.11 -2.62 16 5 C -0.11 -2.27 9.70 22.27 0.22 -2.06 16 6 C -0.13 -2.57 10.05 22.27 0.22 -2.35 16 7 C -0.11 -2.35 9.70 22.27 0.22 -2.14 16 8 C -0.08 -1.77 4.37 -19.87 -0.09 -1.85 16 9 C -0.09 -1.59 5.83 29.10 0.17 -1.42 16 10 C 0.51 14.11 7.82 87.66 0.69 14.79 16 11 O -0.59 -23.34 15.76 -3.04 -0.05 -23.39 16 12 N -0.70 -18.10 3.63 -434.92 -1.58 -19.68 16 13 C 0.15 5.50 3.08 46.61 0.14 5.64 16 14 H 0.05 2.02 7.70 -2.39 -0.02 2.00 16 15 C -0.12 -4.54 6.20 32.21 0.20 -4.34 16 16 C 0.14 6.18 4.72 46.23 0.22 6.40 16 17 H 0.12 6.29 5.52 -2.39 -0.01 6.28 16 18 C -0.12 -4.51 6.44 32.21 0.21 -4.31 16 19 C -0.11 -4.00 6.33 32.21 0.20 -3.80 16 20 C 0.12 5.06 5.35 46.23 0.25 5.31 16 21 H 0.06 2.76 8.14 -2.39 -0.02 2.74 16 22 N -0.62 -32.20 2.99 -615.23 -1.84 -34.04 16 23 C -0.23 -13.17 10.59 84.03 0.89 -12.28 16 24 H 0.07 3.90 7.83 -2.91 -0.02 3.88 16 25 C -0.06 -3.58 5.50 84.86 0.47 -3.11 16 26 N -0.94 -55.36 10.47 21.65 0.23 -55.14 16 27 Si 0.97 47.06 29.55 68.60 2.03 49.09 16 28 H -0.29 -13.84 7.11 99.48 0.71 -13.14 16 29 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 30 H -0.28 -13.02 7.11 99.48 0.71 -12.32 16 31 C -0.10 -2.37 9.36 22.27 0.21 -2.16 16 32 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.09 1.33 8.14 -2.38 -0.02 1.31 16 34 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 35 H 0.07 1.07 8.09 -2.39 -0.02 1.05 16 36 H 0.08 1.07 8.08 -2.39 -0.02 1.05 16 37 H 0.14 2.19 8.06 -2.91 -0.02 2.16 16 38 H 0.14 2.08 8.06 -2.91 -0.02 2.05 16 39 H 0.13 2.33 8.06 -2.91 -0.02 2.30 16 40 H 0.14 1.42 8.09 -2.38 -0.02 1.40 16 41 H 0.13 1.52 8.08 -2.39 -0.02 1.50 16 42 H 0.42 7.26 8.02 -92.71 -0.74 6.51 16 43 H 0.04 1.78 8.14 -2.38 -0.02 1.76 16 44 H 0.10 2.71 7.34 -2.39 -0.02 2.70 16 45 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 46 H 0.09 2.47 7.82 -2.39 -0.02 2.45 16 47 H 0.09 2.45 6.48 -2.39 -0.02 2.44 16 48 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 49 H 0.25 14.21 8.31 -92.71 -0.77 13.44 16 50 H 0.12 2.67 8.06 -2.91 -0.02 2.64 16 Total: -1.00 -79.07 402.60 3.17 -75.90 By element: Atomic # 1 Polarization: 25.10 SS G_CDS: 0.19 Total: 25.30 kcal Atomic # 6 Polarization: -12.05 SS G_CDS: 5.78 Total: -6.28 kcal Atomic # 7 Polarization: -105.66 SS G_CDS: -3.19 Total: -108.85 kcal Atomic # 8 Polarization: -33.51 SS G_CDS: -1.64 Total: -35.15 kcal Atomic # 14 Polarization: 47.06 SS G_CDS: 2.03 Total: 49.09 kcal Total: -79.07 3.17 -75.90 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001096324929.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.954 kcal (2) G-P(sol) polarization free energy of solvation -79.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.895 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds