Wall clock time and date at job start Wed Apr 1 2020 03:01:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35902 * 116.99968 * 2 1 4 4 C 1.38752 * 120.05824 * 0.02562 * 3 2 1 5 5 C 1.38111 * 119.94507 * 179.97438 * 4 3 2 6 6 C 1.38292 * 120.05670 * 0.02562 * 5 4 3 7 7 C 1.38243 * 120.10892 * 359.75167 * 6 5 4 8 8 C 1.38165 * 120.05838 * 0.50123 * 7 6 5 9 9 C 1.50698 * 120.03222 * 179.77223 * 8 7 6 10 10 H 1.08994 * 109.47381 * 219.72581 * 9 8 7 11 11 C 1.52995 * 109.47055 * 99.72253 * 9 8 7 12 12 N 1.46500 * 109.47361 * 185.00085 * 11 9 8 13 13 C 1.34770 * 120.00423 * 180.02562 * 12 11 9 14 14 O 1.21287 * 120.00246 * 359.97438 * 13 12 11 15 15 C 1.50704 * 120.00338 * 180.02562 * 13 12 11 16 16 C 1.52999 * 115.55114 * 180.02562 * 15 13 12 17 17 C 1.52998 * 117.49801 * 34.32740 * 16 15 13 18 18 C 1.53002 * 117.50114 * 325.66783 * 16 15 13 19 19 C 1.52997 * 117.49617 * 34.33013 * 15 13 12 20 20 C 1.53002 * 117.49474 * 325.67108 * 15 13 12 21 21 N 1.46505 * 109.46927 * 339.72534 * 9 8 7 22 22 C 1.36931 * 119.99788 * 274.99864 * 21 9 8 23 23 H 1.08002 * 120.00438 * 0.02562 * 22 21 9 24 24 C 1.38817 * 119.99680 * 179.72358 * 22 21 9 25 25 N 1.31617 * 119.99873 * 180.27450 * 24 22 21 26 26 Si 1.86800 * 120.00209 * 0.27770 * 24 22 21 27 27 H 1.48498 * 109.47118 * 89.99559 * 26 24 22 28 28 H 1.48499 * 109.47134 * 210.00079 * 26 24 22 29 29 H 1.48507 * 109.46904 * 329.99901 * 26 24 22 30 30 H 1.08997 * 109.47148 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46976 * 300.00061 * 1 2 3 32 32 H 1.09005 * 109.46950 * 60.00335 * 1 2 3 33 33 H 1.08003 * 120.02438 * 359.96431 * 4 3 2 34 34 H 1.08007 * 119.97164 * 180.02562 * 5 4 3 35 35 H 1.08002 * 119.94105 * 179.97438 * 6 5 4 36 36 H 1.08003 * 119.97126 * 180.25333 * 7 6 5 37 37 H 1.09005 * 109.47349 * 305.00168 * 11 9 8 38 38 H 1.09002 * 109.47351 * 65.00339 * 11 9 8 39 39 H 0.96998 * 119.99598 * 0.02562 * 12 11 9 40 40 H 1.09001 * 115.54801 * 180.02562 * 16 15 13 41 41 H 1.08998 * 117.50032 * 0.02562 * 17 16 15 42 42 H 1.09007 * 117.49619 * 145.02001 * 17 16 15 43 43 H 1.08998 * 117.50132 * 214.98013 * 18 16 15 44 44 H 1.09001 * 117.49624 * 359.97438 * 18 16 15 45 45 H 1.08996 * 117.50162 * 0.02562 * 19 15 13 46 46 H 1.08994 * 117.49811 * 145.02231 * 19 15 13 47 47 H 1.09003 * 117.49312 * 214.97628 * 20 15 13 48 48 H 1.08996 * 117.49942 * 359.97438 * 20 15 13 49 49 H 0.97000 * 119.99792 * 94.99659 * 21 9 8 50 50 H 0.97000 * 120.00553 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2915 2.3753 0.0005 5 6 1.9209 3.6047 0.0011 6 6 3.3020 3.6757 0.0005 7 6 4.0560 2.5170 0.0046 8 6 3.4312 1.2847 -0.0012 9 6 4.2537 0.0220 -0.0019 10 1 3.7922 -0.7119 -0.6624 11 6 4.3228 -0.5424 1.4185 12 7 5.2188 -1.7012 1.4405 13 6 5.4342 -2.3648 2.5936 14 8 4.8865 -2.0024 3.6133 15 6 6.3563 -3.5566 2.6163 16 6 6.5266 -4.2333 3.9779 17 6 5.3134 -4.2610 4.9096 18 6 6.4961 -3.3400 5.2196 19 6 7.5692 -3.5291 1.6841 20 6 6.3864 -4.4502 1.3748 21 7 5.6076 0.3214 -0.4748 22 6 5.8752 0.3404 -1.8176 23 1 5.0881 0.1351 -2.5280 24 6 7.1567 0.6298 -2.2658 25 7 7.4127 0.6534 -3.5566 26 14 8.5180 0.9856 -1.0371 27 1 9.1997 -0.2823 -0.6726 28 1 9.5005 1.9195 -1.6434 29 1 7.9357 1.6026 0.1818 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8901 33 1 0.2129 2.3204 0.0004 34 1 1.3340 4.5114 0.0019 35 1 3.7923 4.6380 0.0005 36 1 5.1345 2.5751 0.0084 37 1 4.7021 0.2231 2.0956 38 1 3.3261 -0.8477 1.7371 39 1 5.6571 -1.9909 0.6251 40 1 7.1939 -5.0950 3.9943 41 1 4.3938 -3.7974 4.5525 42 1 5.1824 -5.1411 5.5394 43 1 7.1427 -3.6144 6.0531 44 1 6.3552 -2.2700 5.0665 45 1 7.7004 -2.6489 1.0547 46 1 8.4886 -3.9932 2.0407 47 1 6.5283 -5.5200 1.5281 48 1 5.7389 -4.1764 0.5418 49 1 6.3144 0.5063 0.1633 50 1 8.3082 0.8552 -3.8700 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001198768708.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:01:40 Heat of formation + Delta-G solvation = 27.494810 kcal Electronic energy + Delta-G solvation = -31060.625538 eV Core-core repulsion = 27055.708412 eV Total energy + Delta-G solvation = -4004.917126 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.39734 -39.92122 -37.52244 -37.00183 -36.05981 -35.36622 -33.36421 -31.98257 -30.19394 -29.76431 -27.94762 -27.02919 -24.85541 -23.63662 -22.81113 -22.69981 -21.94101 -21.61098 -21.50302 -20.18758 -19.31034 -17.97339 -17.59038 -16.61810 -16.17254 -16.00758 -15.55487 -15.48524 -15.07946 -14.97022 -14.58881 -14.40380 -13.99823 -13.87661 -13.59555 -13.26840 -13.11187 -12.90266 -12.83484 -12.50784 -12.36886 -12.25835 -11.77450 -11.69644 -11.50635 -11.37501 -11.17075 -11.05691 -10.95092 -10.86949 -10.82766 -10.79612 -10.55487 -10.24304 -10.06774 -9.66964 -9.40145 -9.36533 -9.11243 -8.71283 -8.40852 -7.79361 -7.44950 -5.86355 -3.25198 1.73738 1.82556 2.63399 3.27595 3.31622 3.37901 3.42463 3.51994 3.68964 4.16580 4.24719 4.42168 4.48337 4.58526 4.92043 4.97824 5.01235 5.05154 5.15561 5.20968 5.23510 5.31323 5.32081 5.35759 5.42583 5.43122 5.50898 5.59587 5.59981 5.76970 5.80244 5.82943 5.83032 5.85861 5.88243 6.00382 6.05471 6.13898 6.18145 6.31675 6.39509 6.48465 6.50411 6.65776 6.77639 6.83888 7.07441 7.23204 7.69213 7.83013 7.89128 8.31388 8.48669 9.07970 9.79161 9.97654 11.31360 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.007882 B = 0.004620 C = 0.003320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3551.469867 B = 6059.188959 C = 8430.789447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.313 6.313 3 C 0.125 3.875 4 C -0.217 4.217 5 C -0.093 4.093 6 C -0.163 4.163 7 C -0.046 4.046 8 C -0.115 4.115 9 C 0.215 3.785 10 H 0.078 0.922 11 C 0.122 3.878 12 N -0.715 5.715 13 C 0.546 3.454 14 O -0.542 6.542 15 C -0.127 4.127 16 C -0.114 4.114 17 C -0.168 4.168 18 C -0.169 4.169 19 C -0.156 4.156 20 C -0.154 4.154 21 N -0.741 5.741 22 C -0.246 4.246 23 H 0.092 0.908 24 C 0.013 3.987 25 N -0.927 5.927 26 Si 0.875 3.125 27 H -0.282 1.282 28 H -0.291 1.291 29 H -0.277 1.277 30 H 0.095 0.905 31 H 0.051 0.949 32 H 0.052 0.948 33 H 0.120 0.880 34 H 0.115 0.885 35 H 0.117 0.883 36 H 0.135 0.865 37 H 0.062 0.938 38 H 0.073 0.927 39 H 0.408 0.592 40 H 0.107 0.893 41 H 0.108 0.892 42 H 0.083 0.917 43 H 0.083 0.917 44 H 0.108 0.892 45 H 0.106 0.894 46 H 0.104 0.896 47 H 0.104 0.896 48 H 0.104 0.896 49 H 0.363 0.637 50 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.243 -5.291 11.548 15.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.227 6.227 3 C 0.079 3.921 4 C -0.236 4.236 5 C -0.111 4.111 6 C -0.181 4.181 7 C -0.064 4.064 8 C -0.120 4.120 9 C 0.105 3.895 10 H 0.096 0.904 11 C -0.002 4.002 12 N -0.367 5.367 13 C 0.332 3.668 14 O -0.420 6.420 15 C -0.130 4.130 16 C -0.132 4.132 17 C -0.204 4.204 18 C -0.205 4.205 19 C -0.193 4.193 20 C -0.191 4.191 21 N -0.384 5.384 22 C -0.376 4.376 23 H 0.110 0.890 24 C -0.183 4.183 25 N -0.574 5.574 26 Si 0.706 3.294 27 H -0.209 1.209 28 H -0.217 1.217 29 H -0.203 1.203 30 H 0.113 0.887 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.138 0.862 34 H 0.134 0.866 35 H 0.135 0.865 36 H 0.152 0.848 37 H 0.081 0.919 38 H 0.092 0.908 39 H 0.245 0.755 40 H 0.125 0.875 41 H 0.126 0.874 42 H 0.101 0.899 43 H 0.101 0.899 44 H 0.126 0.874 45 H 0.124 0.876 46 H 0.123 0.877 47 H 0.123 0.877 48 H 0.122 0.878 49 H 0.196 0.804 50 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -8.551 -5.235 11.982 15.623 hybrid contribution 0.999 0.545 0.185 1.153 sum -7.551 -4.690 12.166 15.068 Atomic orbital electron populations 1.22971 0.79257 1.03424 1.00916 1.86085 1.20592 1.27103 1.88872 1.18902 0.91848 0.83902 0.97433 1.21062 0.99303 0.92576 1.10634 1.20795 0.94676 0.96526 0.99077 1.21057 0.93786 0.98466 1.04774 1.20968 1.00824 0.90508 0.94076 1.20252 0.90024 0.97920 1.03755 1.19196 0.86010 0.91896 0.92442 0.90404 1.21584 0.93812 0.87141 0.97662 1.45981 1.48117 1.31100 1.11495 1.19406 0.81160 0.82876 0.83340 1.90609 1.50761 1.67990 1.32678 1.20972 1.01355 0.98066 0.92609 1.21349 1.02953 1.00870 0.88065 1.23029 0.94338 1.01091 1.01982 1.23038 1.01114 0.99219 0.97162 1.23155 0.92511 1.02788 1.00880 1.23106 1.01602 0.97658 0.96740 1.42864 1.05001 1.85296 1.05210 1.19024 0.95902 1.41124 0.81501 0.89026 1.24629 0.96981 1.01372 0.95326 1.69685 1.20880 1.55028 1.11833 0.86713 0.83271 0.78307 0.81155 1.20878 1.21700 1.20319 0.88666 0.93086 0.92987 0.86232 0.86649 0.86515 0.84764 0.91920 0.90848 0.75504 0.87546 0.87374 0.89875 0.89853 0.87364 0.87573 0.87727 0.87748 0.87770 0.80352 0.92944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 9.81 101.05 0.99 1.30 16 2 O -0.31 -4.74 9.68 -19.43 -0.19 -4.92 16 3 C 0.12 2.05 6.66 -39.22 -0.26 1.78 16 4 C -0.22 -3.14 9.04 -39.44 -0.36 -3.49 16 5 C -0.09 -1.32 10.04 -39.61 -0.40 -1.72 16 6 C -0.16 -2.57 10.04 -39.56 -0.40 -2.97 16 7 C -0.05 -0.83 9.32 -39.61 -0.37 -1.20 16 8 C -0.12 -2.10 5.06 -104.47 -0.53 -2.63 16 9 C 0.21 3.97 2.32 -69.08 -0.16 3.81 16 10 H 0.08 1.53 7.79 -51.93 -0.40 1.13 16 11 C 0.12 2.05 5.21 -4.04 -0.02 2.03 16 12 N -0.72 -11.36 5.19 -60.29 -0.31 -11.67 16 13 C 0.55 8.68 7.24 -10.99 -0.08 8.60 16 14 O -0.54 -9.75 11.83 5.55 0.07 -9.68 16 15 C -0.13 -1.67 2.46 -155.66 -0.38 -2.06 16 16 C -0.11 -1.39 5.84 -90.62 -0.53 -1.92 16 17 C -0.17 -2.12 9.66 -26.69 -0.26 -2.38 16 18 C -0.17 -2.18 9.66 -26.69 -0.26 -2.44 16 19 C -0.16 -1.90 9.60 -26.69 -0.26 -2.16 16 20 C -0.15 -1.74 9.60 -26.69 -0.26 -1.99 16 21 N -0.74 -15.69 2.98 -54.55 -0.16 -15.85 16 22 C -0.25 -6.32 10.40 -15.06 -0.16 -6.47 16 23 H 0.09 2.61 8.06 -52.49 -0.42 2.19 16 24 C 0.01 0.36 5.50 -17.43 -0.10 0.27 16 25 N -0.93 -27.58 13.97 55.49 0.78 -26.80 16 26 Si 0.88 20.65 27.74 -169.99 -4.72 15.94 16 27 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 28 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 29 H -0.28 -6.20 6.51 56.52 0.37 -5.83 16 30 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 31 H 0.05 0.47 7.66 -51.93 -0.40 0.07 16 32 H 0.05 0.50 7.66 -51.93 -0.40 0.11 16 33 H 0.12 1.40 6.30 -52.48 -0.33 1.07 16 34 H 0.12 1.31 8.06 -52.48 -0.42 0.89 16 35 H 0.12 1.61 8.06 -52.49 -0.42 1.19 16 36 H 0.13 2.63 7.14 -52.48 -0.37 2.26 16 37 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 38 H 0.07 1.23 8.09 -51.93 -0.42 0.81 16 39 H 0.41 6.45 6.33 -40.82 -0.26 6.20 16 40 H 0.11 1.10 8.14 -51.93 -0.42 0.68 16 41 H 0.11 1.61 6.28 -51.93 -0.33 1.28 16 42 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 43 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 44 H 0.11 1.67 6.28 -51.93 -0.33 1.34 16 45 H 0.11 1.45 7.55 -51.93 -0.39 1.06 16 46 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 47 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 48 H 0.10 1.20 7.55 -51.93 -0.39 0.81 16 49 H 0.36 7.71 5.66 -40.82 -0.23 7.48 16 50 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 403.37 15.07 6.08 6.08 Total: -1.00 -30.44 403.37 -9.88 -40.33 By element: Atomic # 1 Polarization: 27.87 SS G_CDS: -7.65 Total: 20.22 kcal Atomic # 6 Polarization: -9.85 SS G_CDS: -3.77 Total: -13.63 kcal Atomic # 7 Polarization: -54.63 SS G_CDS: 0.30 Total: -54.33 kcal Atomic # 8 Polarization: -14.48 SS G_CDS: -0.12 Total: -14.61 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -4.72 Total: 15.94 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -30.44 -9.88 -40.33 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001198768708.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.820 kcal (2) G-P(sol) polarization free energy of solvation -30.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.325 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds