Wall clock time and date at job start Wed Apr 1 2020 03:01:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35902 * 116.99968 * 2 1 4 4 C 1.38752 * 120.05824 * 0.02562 * 3 2 1 5 5 C 1.38111 * 119.94507 * 179.97438 * 4 3 2 6 6 C 1.38292 * 120.05670 * 0.02562 * 5 4 3 7 7 C 1.38243 * 120.10892 * 359.75167 * 6 5 4 8 8 C 1.38165 * 120.05838 * 0.50123 * 7 6 5 9 9 C 1.50698 * 120.03222 * 179.77223 * 8 7 6 10 10 H 1.08994 * 109.47381 * 219.72581 * 9 8 7 11 11 C 1.52995 * 109.47055 * 99.72253 * 9 8 7 12 12 N 1.46500 * 109.47361 * 185.00085 * 11 9 8 13 13 C 1.34770 * 120.00423 * 180.02562 * 12 11 9 14 14 O 1.21287 * 120.00246 * 359.97438 * 13 12 11 15 15 C 1.50704 * 120.00338 * 180.02562 * 13 12 11 16 16 C 1.52999 * 115.55114 * 180.02562 * 15 13 12 17 17 C 1.52998 * 117.49801 * 34.32740 * 16 15 13 18 18 C 1.53002 * 117.50114 * 325.66783 * 16 15 13 19 19 C 1.52997 * 117.49617 * 34.33013 * 15 13 12 20 20 C 1.53002 * 117.49474 * 325.67108 * 15 13 12 21 21 N 1.46505 * 109.46927 * 339.72534 * 9 8 7 22 22 C 1.36931 * 119.99788 * 274.99864 * 21 9 8 23 23 H 1.08002 * 120.00438 * 0.02562 * 22 21 9 24 24 C 1.38817 * 119.99680 * 179.72358 * 22 21 9 25 25 N 1.31617 * 119.99873 * 180.27450 * 24 22 21 26 26 Si 1.86800 * 120.00209 * 0.27770 * 24 22 21 27 27 H 1.48498 * 109.47118 * 89.99559 * 26 24 22 28 28 H 1.48499 * 109.47134 * 210.00079 * 26 24 22 29 29 H 1.48507 * 109.46904 * 329.99901 * 26 24 22 30 30 H 1.08997 * 109.47148 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46976 * 300.00061 * 1 2 3 32 32 H 1.09005 * 109.46950 * 60.00335 * 1 2 3 33 33 H 1.08003 * 120.02438 * 359.96431 * 4 3 2 34 34 H 1.08007 * 119.97164 * 180.02562 * 5 4 3 35 35 H 1.08002 * 119.94105 * 179.97438 * 6 5 4 36 36 H 1.08003 * 119.97126 * 180.25333 * 7 6 5 37 37 H 1.09005 * 109.47349 * 305.00168 * 11 9 8 38 38 H 1.09002 * 109.47351 * 65.00339 * 11 9 8 39 39 H 0.96998 * 119.99598 * 0.02562 * 12 11 9 40 40 H 1.09001 * 115.54801 * 180.02562 * 16 15 13 41 41 H 1.08998 * 117.50032 * 0.02562 * 17 16 15 42 42 H 1.09007 * 117.49619 * 145.02001 * 17 16 15 43 43 H 1.08998 * 117.50132 * 214.98013 * 18 16 15 44 44 H 1.09001 * 117.49624 * 359.97438 * 18 16 15 45 45 H 1.08996 * 117.50162 * 0.02562 * 19 15 13 46 46 H 1.08994 * 117.49811 * 145.02231 * 19 15 13 47 47 H 1.09003 * 117.49312 * 214.97628 * 20 15 13 48 48 H 1.08996 * 117.49942 * 359.97438 * 20 15 13 49 49 H 0.97000 * 119.99792 * 94.99659 * 21 9 8 50 50 H 0.97000 * 120.00553 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2915 2.3753 0.0005 5 6 1.9209 3.6047 0.0011 6 6 3.3020 3.6757 0.0005 7 6 4.0560 2.5170 0.0046 8 6 3.4312 1.2847 -0.0012 9 6 4.2537 0.0220 -0.0019 10 1 3.7922 -0.7119 -0.6624 11 6 4.3228 -0.5424 1.4185 12 7 5.2188 -1.7012 1.4405 13 6 5.4342 -2.3648 2.5936 14 8 4.8865 -2.0024 3.6133 15 6 6.3563 -3.5566 2.6163 16 6 6.5266 -4.2333 3.9779 17 6 5.3134 -4.2610 4.9096 18 6 6.4961 -3.3400 5.2196 19 6 7.5692 -3.5291 1.6841 20 6 6.3864 -4.4502 1.3748 21 7 5.6076 0.3214 -0.4748 22 6 5.8752 0.3404 -1.8176 23 1 5.0881 0.1351 -2.5280 24 6 7.1567 0.6298 -2.2658 25 7 7.4127 0.6534 -3.5566 26 14 8.5180 0.9856 -1.0371 27 1 9.1997 -0.2823 -0.6726 28 1 9.5005 1.9195 -1.6434 29 1 7.9357 1.6026 0.1818 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8901 33 1 0.2129 2.3204 0.0004 34 1 1.3340 4.5114 0.0019 35 1 3.7923 4.6380 0.0005 36 1 5.1345 2.5751 0.0084 37 1 4.7021 0.2231 2.0956 38 1 3.3261 -0.8477 1.7371 39 1 5.6571 -1.9909 0.6251 40 1 7.1939 -5.0950 3.9943 41 1 4.3938 -3.7974 4.5525 42 1 5.1824 -5.1411 5.5394 43 1 7.1427 -3.6144 6.0531 44 1 6.3552 -2.2700 5.0665 45 1 7.7004 -2.6489 1.0547 46 1 8.4886 -3.9932 2.0407 47 1 6.5283 -5.5200 1.5281 48 1 5.7389 -4.1764 0.5418 49 1 6.3144 0.5063 0.1633 50 1 8.3082 0.8552 -3.8700 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001198768708.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:01:39 Heat of formation + Delta-G solvation = 10.327862 kcal Electronic energy + Delta-G solvation = -31061.369953 eV Core-core repulsion = 27055.708412 eV Total energy + Delta-G solvation = -4005.661541 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.59800 -41.11025 -38.77799 -38.15172 -37.39795 -36.52823 -34.95084 -33.65042 -31.84267 -30.98376 -29.34387 -28.00962 -26.10993 -25.18789 -24.28516 -23.64548 -22.90289 -22.83891 -22.64381 -21.65226 -20.58512 -19.77905 -18.84219 -17.76717 -17.46409 -17.31088 -16.76964 -16.54620 -16.42401 -16.18786 -16.07761 -15.73032 -15.26897 -15.18839 -14.91869 -14.60546 -14.49548 -14.25965 -14.16964 -14.06809 -13.56302 -13.32146 -13.10265 -12.92741 -12.77262 -12.60829 -12.52162 -12.35545 -12.32578 -12.15164 -12.06258 -11.92374 -11.83380 -11.73677 -11.68522 -11.10238 -11.03168 -10.55771 -10.37976 -10.06845 -9.72236 -9.39613 -9.00681 -7.99813 -5.35608 0.47580 0.57667 1.38245 1.39519 1.44322 1.46372 2.16009 2.46996 2.47468 2.67378 2.89878 3.27840 3.29891 3.43804 3.45353 3.55810 3.88650 3.92580 3.96738 4.05260 4.10056 4.23317 4.24787 4.34264 4.36690 4.37524 4.38167 4.43885 4.54567 4.60111 4.70298 4.71149 4.75483 4.85863 4.86302 4.88256 4.96152 4.98603 5.05545 5.14560 5.17021 5.32253 5.42259 5.45872 5.47148 5.58400 5.73585 5.81718 5.97874 6.22153 6.52689 6.55597 7.05781 7.20919 7.77388 7.99294 9.21426 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.007882 B = 0.004620 C = 0.003320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3551.469867 B = 6059.188959 C = 8430.789447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.334 6.334 3 C 0.118 3.882 4 C -0.213 4.213 5 C -0.085 4.085 6 C -0.171 4.171 7 C -0.070 4.070 8 C -0.144 4.144 9 C 0.224 3.776 10 H 0.062 0.938 11 C 0.138 3.862 12 N -0.716 5.716 13 C 0.539 3.461 14 O -0.566 6.566 15 C -0.142 4.142 16 C -0.105 4.105 17 C -0.169 4.169 18 C -0.177 4.177 19 C -0.154 4.154 20 C -0.139 4.139 21 N -0.736 5.736 22 C -0.218 4.218 23 H 0.055 0.945 24 C -0.046 4.046 25 N -0.978 5.978 26 Si 0.939 3.061 27 H -0.270 1.270 28 H -0.301 1.301 29 H -0.261 1.261 30 H 0.114 0.886 31 H 0.067 0.933 32 H 0.062 0.938 33 H 0.153 0.847 34 H 0.153 0.847 35 H 0.134 0.866 36 H 0.111 0.889 37 H 0.053 0.947 38 H 0.073 0.927 39 H 0.408 0.592 40 H 0.137 0.863 41 H 0.080 0.920 42 H 0.107 0.893 43 H 0.105 0.895 44 H 0.077 0.923 45 H 0.087 0.913 46 H 0.128 0.872 47 H 0.132 0.868 48 H 0.097 0.903 49 H 0.365 0.635 50 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.038 -6.015 13.292 17.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.248 6.248 3 C 0.072 3.928 4 C -0.232 4.232 5 C -0.103 4.103 6 C -0.189 4.189 7 C -0.089 4.089 8 C -0.148 4.148 9 C 0.115 3.885 10 H 0.079 0.921 11 C 0.014 3.986 12 N -0.367 5.367 13 C 0.327 3.673 14 O -0.446 6.446 15 C -0.145 4.145 16 C -0.123 4.123 17 C -0.206 4.206 18 C -0.214 4.214 19 C -0.191 4.191 20 C -0.176 4.176 21 N -0.378 5.378 22 C -0.348 4.348 23 H 0.073 0.927 24 C -0.238 4.238 25 N -0.628 5.628 26 Si 0.767 3.233 27 H -0.196 1.196 28 H -0.229 1.229 29 H -0.186 1.186 30 H 0.132 0.868 31 H 0.085 0.915 32 H 0.081 0.919 33 H 0.170 0.830 34 H 0.171 0.829 35 H 0.152 0.848 36 H 0.129 0.871 37 H 0.072 0.928 38 H 0.092 0.908 39 H 0.245 0.755 40 H 0.154 0.846 41 H 0.098 0.902 42 H 0.125 0.875 43 H 0.123 0.877 44 H 0.095 0.905 45 H 0.105 0.895 46 H 0.146 0.854 47 H 0.150 0.850 48 H 0.116 0.884 49 H 0.199 0.801 50 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -9.391 -5.973 13.770 17.705 hybrid contribution 1.016 0.784 -0.366 1.334 sum -8.375 -5.189 13.404 16.636 Atomic orbital electron populations 1.23308 0.76759 1.05262 1.02162 1.86058 1.23217 1.26778 1.88697 1.18989 0.91426 0.85214 0.97190 1.21460 1.00929 0.91796 1.09013 1.21231 0.94164 0.97961 0.96917 1.21305 0.94812 0.98278 1.04545 1.20914 1.00045 0.91767 0.96134 1.20139 0.91277 0.97253 1.06160 1.19122 0.84451 0.92147 0.92779 0.92055 1.21330 0.93985 0.87189 0.96130 1.45990 1.48031 1.30905 1.11792 1.19990 0.81186 0.83440 0.82636 1.90603 1.51828 1.68831 1.33370 1.20991 1.01595 0.97692 0.94196 1.21506 1.02802 1.01081 0.86879 1.22982 0.93266 1.01650 1.02732 1.22986 1.02051 0.97635 0.98733 1.23209 0.93343 1.02559 1.00033 1.23231 1.00443 0.98852 0.95054 1.42681 1.06407 1.85321 1.03430 1.18817 0.94638 1.38621 0.82754 0.92664 1.25250 0.99371 1.02364 0.96824 1.69855 1.21233 1.57638 1.14097 0.85670 0.80018 0.78308 0.79292 1.19616 1.22854 1.18629 0.86766 0.91458 0.91933 0.82958 0.82938 0.84778 0.87055 0.92841 0.90831 0.75475 0.84577 0.90162 0.87460 0.87669 0.90480 0.89475 0.85420 0.84969 0.88449 0.80104 0.93402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.37 9.81 113.37 1.11 1.48 16 2 O -0.33 -9.90 9.68 -92.45 -0.90 -10.80 16 3 C 0.12 3.80 6.66 22.51 0.15 3.95 16 4 C -0.21 -5.66 9.04 22.36 0.20 -5.46 16 5 C -0.08 -2.20 10.04 22.25 0.22 -1.97 16 6 C -0.17 -5.26 10.04 22.28 0.22 -5.04 16 7 C -0.07 -2.62 9.32 22.25 0.21 -2.41 16 8 C -0.14 -5.38 5.06 -19.77 -0.10 -5.48 16 9 C 0.22 8.62 2.32 44.24 0.10 8.72 16 10 H 0.06 2.54 7.79 -2.39 -0.02 2.52 16 11 C 0.14 4.80 5.21 86.38 0.45 5.26 16 12 N -0.72 -23.27 5.19 -463.06 -2.40 -25.67 16 13 C 0.54 17.31 7.24 87.66 0.63 17.94 16 14 O -0.57 -20.88 11.83 -3.05 -0.04 -20.92 16 15 C -0.14 -3.55 2.46 -52.93 -0.13 -3.68 16 16 C -0.10 -2.32 5.84 -10.79 -0.06 -2.38 16 17 C -0.17 -4.06 9.66 30.62 0.30 -3.76 16 18 C -0.18 -4.39 9.66 30.62 0.30 -4.09 16 19 C -0.15 -3.47 9.60 30.62 0.29 -3.18 16 20 C -0.14 -2.84 9.60 30.62 0.29 -2.55 16 21 N -0.74 -32.18 2.98 -326.51 -0.97 -33.15 16 22 C -0.22 -11.63 10.40 84.04 0.87 -10.76 16 23 H 0.06 3.33 8.06 -2.91 -0.02 3.31 16 24 C -0.05 -2.57 5.50 84.86 0.47 -2.10 16 25 N -0.98 -60.29 13.97 21.65 0.30 -59.99 16 26 Si 0.94 43.57 27.74 68.60 1.90 45.47 16 27 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 28 H -0.30 -14.50 7.11 99.48 0.71 -13.80 16 29 H -0.26 -11.27 6.51 99.48 0.65 -10.62 16 30 H 0.11 1.69 8.14 -2.39 -0.02 1.68 16 31 H 0.07 1.05 7.66 -2.39 -0.02 1.04 16 32 H 0.06 1.05 7.66 -2.38 -0.02 1.03 16 33 H 0.15 2.97 6.30 -2.91 -0.02 2.96 16 34 H 0.15 2.81 8.06 -2.91 -0.02 2.78 16 35 H 0.13 3.53 8.06 -2.91 -0.02 3.51 16 36 H 0.11 4.56 7.14 -2.91 -0.02 4.54 16 37 H 0.05 1.95 8.14 -2.38 -0.02 1.93 16 38 H 0.07 2.55 8.09 -2.39 -0.02 2.53 16 39 H 0.41 13.22 6.33 -92.71 -0.59 12.64 16 40 H 0.14 2.24 8.14 -2.39 -0.02 2.22 16 41 H 0.08 2.40 6.28 -2.39 -0.02 2.38 16 42 H 0.11 2.01 8.14 -2.38 -0.02 1.99 16 43 H 0.11 2.09 8.14 -2.39 -0.02 2.07 16 44 H 0.08 2.41 6.28 -2.39 -0.01 2.40 16 45 H 0.09 2.32 7.55 -2.39 -0.02 2.30 16 46 H 0.13 2.28 8.14 -2.39 -0.02 2.26 16 47 H 0.13 2.00 8.14 -2.39 -0.02 1.98 16 48 H 0.10 2.14 7.55 -2.39 -0.02 2.12 16 49 H 0.37 15.77 5.66 -92.71 -0.52 15.25 16 50 H 0.26 15.22 8.31 -92.71 -0.77 14.45 16 Total: -1.00 -69.59 403.37 3.23 -66.36 By element: Atomic # 1 Polarization: 54.42 SS G_CDS: -0.21 Total: 54.21 kcal Atomic # 6 Polarization: -21.05 SS G_CDS: 5.53 Total: -15.51 kcal Atomic # 7 Polarization: -115.74 SS G_CDS: -3.07 Total: -118.81 kcal Atomic # 8 Polarization: -30.79 SS G_CDS: -0.93 Total: -31.72 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 1.90 Total: 45.47 kcal Total: -69.59 3.23 -66.36 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001198768708.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.687 kcal (2) G-P(sol) polarization free energy of solvation -69.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.359 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds