Wall clock time and date at job start Wed Apr 1 2020 03:08:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38658 * 125.50159 * 2 1 4 4 C 1.38868 * 107.64896 * 180.02562 * 3 2 1 5 5 N 1.33977 * 132.58122 * 180.02562 * 4 3 2 6 6 C 1.31216 * 120.81503 * 179.65614 * 5 4 3 7 7 C 1.50700 * 119.86194 * 180.29954 * 6 5 4 8 8 C 1.40245 * 120.27789 * 0.59605 * 6 5 4 9 9 C 1.50697 * 120.27106 * 179.69257 * 8 6 5 10 10 C 1.53003 * 109.47358 * 269.72676 * 9 8 6 11 11 C 1.50697 * 109.47059 * 180.02562 * 10 9 8 12 12 O 1.21276 * 120.00181 * 359.97438 * 11 10 9 13 13 N 1.34773 * 119.99611 * 180.02562 * 11 10 9 14 14 C 1.46504 * 120.00513 * 359.97438 * 13 11 10 15 15 C 1.46504 * 119.99967 * 179.97438 * 13 11 10 16 16 H 1.09004 * 109.46912 * 359.97438 * 15 13 11 17 17 C 1.52998 * 109.47160 * 239.99712 * 15 13 11 18 18 C 1.50696 * 109.47320 * 119.99587 * 15 13 11 19 19 H 1.08006 * 120.00263 * 5.62560 * 18 15 13 20 20 C 1.37875 * 120.00299 * 185.61989 * 18 15 13 21 21 N 1.31511 * 120.00157 * 196.97108 * 20 18 15 22 22 Si 1.86798 * 119.99893 * 17.24348 * 20 18 15 23 23 H 1.48496 * 109.47439 * 179.72791 * 22 20 18 24 24 H 1.48507 * 109.47069 * 299.72536 * 22 20 18 25 25 H 1.48497 * 109.47361 * 59.72470 * 22 20 18 26 26 C 1.35526 * 119.45136 * 359.42518 * 8 6 5 27 27 C 1.50706 * 120.43766 * 180.24970 * 26 8 6 28 28 N 1.36520 * 119.12476 * 0.26856 * 26 8 6 29 29 N 1.31415 * 125.50424 * 180.02562 * 2 1 3 30 30 H 1.09001 * 109.47273 * 90.00087 * 1 2 3 31 31 H 1.09001 * 109.47601 * 209.99804 * 1 2 3 32 32 H 1.08999 * 109.47699 * 330.00100 * 1 2 3 33 33 H 1.07998 * 126.18159 * 0.06870 * 3 2 1 34 34 H 1.09000 * 109.46735 * 270.30223 * 7 6 5 35 35 H 1.09002 * 109.47083 * 30.29575 * 7 6 5 36 36 H 1.08990 * 109.47461 * 150.30382 * 7 6 5 37 37 H 1.09000 * 109.46802 * 149.73106 * 9 8 6 38 38 H 1.08998 * 109.47400 * 29.73287 * 9 8 6 39 39 H 1.09003 * 109.46638 * 59.99940 * 10 9 8 40 40 H 1.09000 * 109.46917 * 300.00353 * 10 9 8 41 41 H 1.08999 * 109.47383 * 270.00539 * 14 13 11 42 42 H 1.09000 * 109.46583 * 30.00556 * 14 13 11 43 43 H 1.08995 * 109.47202 * 150.00141 * 14 13 11 44 44 H 1.08997 * 109.47120 * 65.88201 * 17 15 13 45 45 H 1.08996 * 109.47559 * 185.88044 * 17 15 13 46 46 H 1.08995 * 109.47228 * 305.88227 * 17 15 13 47 47 H 0.96996 * 120.00531 * 355.07916 * 21 20 18 48 48 H 1.09000 * 109.46928 * 89.99173 * 27 26 8 49 49 H 1.09000 * 109.47237 * 209.99879 * 27 26 8 50 50 H 1.09000 * 109.46771 * 330.00035 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3122 1.1288 0.0000 4 6 3.6340 0.7031 -0.0006 5 7 4.7993 1.3642 -0.0004 6 6 5.9400 0.7157 0.0057 7 6 7.2382 1.4810 0.0126 8 6 5.9562 -0.6867 -0.0005 9 6 7.2664 -1.4312 -0.0006 10 6 7.7101 -1.6828 -1.4431 11 6 9.0199 -2.4280 -1.4430 12 8 9.5470 -2.7278 -0.3927 13 7 9.6062 -2.7602 -2.6102 14 6 8.9698 -2.3975 -3.8790 15 6 10.8799 -3.4841 -2.6102 16 1 11.1956 -3.6639 -1.5825 17 6 11.9407 -2.6496 -3.3307 18 6 10.7088 -4.8017 -3.3214 19 1 9.7745 -5.0339 -3.8110 20 6 11.7451 -5.7107 -3.3473 21 7 11.7370 -6.6924 -4.2224 22 14 13.1568 -5.5525 -2.1343 23 1 14.1319 -6.6488 -2.3637 24 1 13.8302 -4.2429 -2.3265 25 1 12.6308 -5.6399 -0.7484 26 6 4.7839 -1.3666 -0.0010 27 6 4.7753 -2.8736 -0.0019 28 7 3.6107 -0.6683 -0.0010 29 7 2.2702 -1.0698 -0.0005 30 1 -0.3634 0.0000 -1.0277 31 1 -0.3634 -0.8900 0.5138 32 1 -0.3634 0.8899 0.5138 33 1 1.9728 2.1541 0.0010 34 1 7.5539 1.6701 -1.0134 35 1 7.0978 2.4299 0.5303 36 1 8.0018 0.8966 0.5257 37 1 7.1424 -2.3847 0.5129 38 1 8.0219 -0.8373 0.5136 39 1 7.8340 -0.7293 -1.9566 40 1 6.9545 -2.2769 -1.9572 41 1 8.3041 -3.2009 -4.1944 42 1 8.3958 -1.4802 -3.7483 43 1 9.7361 -2.2414 -4.6382 44 1 12.1399 -1.7432 -2.7591 45 1 12.8587 -3.2300 -3.4228 46 1 11.5795 -2.3811 -4.3233 47 1 10.9694 -6.8195 -4.8016 48 1 4.7734 -3.2376 1.0255 49 1 3.8833 -3.2316 -0.5160 50 1 5.6633 -3.2416 -0.5160 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264016506.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:08:49 Heat of formation + Delta-G solvation = 46.213524 kcal Electronic energy + Delta-G solvation = -30215.801037 eV Core-core repulsion = 26243.988366 eV Total energy + Delta-G solvation = -3971.812671 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -43.48191 -40.94722 -39.83952 -37.31975 -36.49568 -35.32277 -34.81017 -32.72301 -31.81803 -31.58394 -29.37584 -29.32995 -28.44161 -27.69644 -26.75446 -25.33936 -23.13622 -22.90721 -22.16809 -21.12607 -19.91625 -19.53238 -19.49613 -18.16311 -17.44175 -17.39834 -16.89985 -16.80680 -16.07675 -15.65590 -15.35801 -15.02128 -14.95679 -14.73425 -14.58702 -14.55486 -14.38985 -14.10563 -13.97321 -13.88194 -13.78659 -13.68380 -13.51268 -13.37724 -13.30673 -13.16359 -13.01256 -12.95167 -12.74635 -12.57142 -12.36310 -12.07340 -11.91436 -11.81618 -11.63646 -11.54961 -11.15389 -10.88588 -10.66087 -10.46247 -10.18937 -9.48183 -8.90908 -8.69861 -6.38792 -0.54254 -0.23547 0.95916 1.43690 1.48250 1.53069 1.69895 1.78539 2.21550 2.37045 2.43640 2.71216 2.95383 3.04855 3.18535 3.46563 3.73022 3.83483 3.98640 4.06306 4.12168 4.21695 4.25187 4.35229 4.37593 4.43262 4.52092 4.56548 4.63139 4.67025 4.68522 4.71249 4.72080 4.76048 4.77745 4.78626 4.82786 4.96186 4.97165 5.05900 5.06595 5.08264 5.16953 5.33849 5.44470 5.45070 5.59722 5.71973 5.84130 6.03342 6.38564 6.56973 6.58010 6.76472 7.30596 7.43394 8.62790 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.020253 B = 0.002357 C = 0.002251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1382.157107 B =11877.606160 C =12433.609228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.111 3.889 3 C -0.284 4.284 4 C 0.242 3.758 5 N -0.496 5.496 6 C 0.222 3.778 7 C -0.113 4.113 8 C -0.183 4.183 9 C -0.043 4.043 10 C -0.123 4.123 11 C 0.500 3.500 12 O -0.592 6.592 13 N -0.599 5.599 14 C 0.085 3.915 15 C 0.232 3.768 16 H 0.035 0.965 17 C -0.154 4.154 18 C -0.603 4.603 19 H 0.029 0.971 20 C -0.013 4.013 21 N -0.934 5.934 22 Si 1.074 2.926 23 H -0.286 1.286 24 H -0.237 1.237 25 H -0.278 1.278 26 C 0.186 3.814 27 C -0.120 4.120 28 N -0.323 5.323 29 N -0.346 5.346 30 H 0.097 0.903 31 H 0.080 0.920 32 H 0.105 0.895 33 H 0.176 0.824 34 H 0.109 0.891 35 H 0.092 0.908 36 H 0.103 0.897 37 H 0.082 0.918 38 H 0.103 0.897 39 H 0.122 0.878 40 H 0.099 0.901 41 H 0.039 0.961 42 H 0.101 0.899 43 H 0.069 0.931 44 H 0.051 0.949 45 H 0.054 0.946 46 H 0.058 0.942 47 H 0.254 0.746 48 H 0.103 0.897 49 H 0.083 0.917 50 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.909 18.827 7.371 26.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.048 4.048 3 C -0.315 4.315 4 C 0.015 3.985 5 N -0.210 5.210 6 C 0.059 3.941 7 C -0.170 4.170 8 C -0.189 4.189 9 C -0.082 4.082 10 C -0.163 4.163 11 C 0.290 3.710 12 O -0.474 6.474 13 N -0.329 5.329 14 C -0.058 4.058 15 C 0.128 3.872 16 H 0.053 0.947 17 C -0.212 4.212 18 C -0.641 4.641 19 H 0.047 0.953 20 C -0.213 4.213 21 N -0.570 5.570 22 Si 0.896 3.104 23 H -0.212 1.212 24 H -0.161 1.161 25 H -0.204 1.204 26 C 0.071 3.929 27 C -0.176 4.176 28 N -0.093 5.093 29 N -0.172 5.172 30 H 0.115 0.885 31 H 0.099 0.901 32 H 0.124 0.876 33 H 0.193 0.807 34 H 0.127 0.873 35 H 0.110 0.890 36 H 0.121 0.879 37 H 0.100 0.900 38 H 0.122 0.878 39 H 0.140 0.860 40 H 0.118 0.882 41 H 0.058 0.942 42 H 0.120 0.880 43 H 0.088 0.912 44 H 0.070 0.930 45 H 0.073 0.927 46 H 0.076 0.924 47 H 0.063 0.937 48 H 0.121 0.879 49 H 0.102 0.898 50 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -15.529 17.651 8.281 24.926 hybrid contribution -1.672 -0.112 -0.888 1.897 sum -17.201 17.539 7.393 25.654 Atomic orbital electron populations 1.20450 0.82689 1.05067 1.04754 1.22955 0.99034 0.89367 0.93408 1.21141 0.87198 1.01183 1.21944 1.21167 0.95636 0.80757 1.00960 1.68140 0.96076 1.37002 1.19772 1.22341 0.94773 0.90677 0.86345 1.21089 0.89607 1.00644 1.05648 1.20122 0.94580 0.94453 1.09740 1.20174 0.91032 1.00820 0.96147 1.21674 0.93243 1.02330 0.99057 1.21203 0.87363 0.79536 0.82906 1.90630 1.66936 1.57558 1.32264 1.48030 1.23108 1.55048 1.06756 1.21762 0.98148 1.00325 0.85539 1.18917 0.81915 0.90013 0.96324 0.94744 1.22359 0.99108 0.99061 1.00669 1.22344 1.01301 1.03021 1.37473 0.95303 1.26898 1.03568 0.92982 0.97817 1.70989 1.30566 1.35570 1.19827 0.83698 0.74140 0.78154 0.74413 1.21219 1.16114 1.20441 1.20914 0.81648 0.96821 0.93528 1.21089 1.05464 0.85663 1.05421 1.47199 1.06226 1.07270 1.48628 1.77732 0.83012 1.22780 1.33688 0.88493 0.90108 0.87641 0.80689 0.87256 0.88956 0.87908 0.89956 0.87837 0.86030 0.88236 0.94207 0.88022 0.91227 0.92953 0.92723 0.92351 0.93688 0.87872 0.89802 0.87705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.83 10.43 71.24 0.74 -0.09 16 2 C 0.11 2.40 7.16 42.72 0.31 2.70 16 3 C -0.28 -6.56 10.83 22.52 0.24 -6.31 16 4 C 0.24 6.52 7.92 133.14 1.05 7.58 16 5 N -0.50 -12.42 10.40 -180.66 -1.88 -14.30 16 6 C 0.22 4.49 6.83 43.14 0.29 4.79 16 7 C -0.11 -1.47 9.80 71.24 0.70 -0.77 16 8 C -0.18 -3.72 5.12 -20.00 -0.10 -3.83 16 9 C -0.04 -0.86 3.56 29.85 0.11 -0.75 16 10 C -0.12 -2.63 4.10 29.85 0.12 -2.51 16 11 C 0.50 16.80 7.67 87.66 0.67 17.47 16 12 O -0.59 -24.46 15.31 -3.02 -0.05 -24.51 16 13 N -0.60 -22.12 2.75 -826.80 -2.28 -24.40 16 14 C 0.08 2.44 9.43 127.77 1.20 3.64 16 15 C 0.23 10.53 2.22 44.24 0.10 10.63 16 16 H 0.03 1.73 5.56 -2.39 -0.01 1.72 16 17 C -0.15 -6.05 8.96 71.98 0.64 -5.41 16 18 C -0.60 -32.70 8.68 25.60 0.22 -32.48 16 19 H 0.03 1.70 7.75 -2.91 -0.02 1.68 16 20 C -0.01 -0.75 5.30 84.65 0.45 -0.30 16 21 N -0.93 -56.86 13.70 21.45 0.29 -56.56 16 22 Si 1.07 49.80 26.29 68.60 1.80 51.60 16 23 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 24 H -0.24 -9.57 5.74 99.48 0.57 -9.00 16 25 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 26 C 0.19 4.29 6.86 41.20 0.28 4.58 16 27 C -0.12 -2.32 9.28 71.24 0.66 -1.66 16 28 N -0.32 -8.65 3.90 -180.76 -0.70 -9.36 16 29 N -0.35 -9.20 12.52 -47.85 -0.60 -9.80 16 30 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 33 H 0.18 3.18 8.06 -2.91 -0.02 3.16 16 34 H 0.11 1.09 8.14 -2.39 -0.02 1.07 16 35 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 36 H 0.10 1.14 6.00 -2.39 -0.01 1.13 16 37 H 0.08 1.79 6.66 -2.39 -0.02 1.78 16 38 H 0.10 1.93 5.96 -2.39 -0.01 1.92 16 39 H 0.12 1.89 7.40 -2.39 -0.02 1.87 16 40 H 0.10 1.97 7.36 -2.39 -0.02 1.95 16 41 H 0.04 1.22 8.09 -2.39 -0.02 1.20 16 42 H 0.10 1.94 6.44 -2.39 -0.02 1.92 16 43 H 0.07 2.06 6.33 -2.39 -0.02 2.04 16 44 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 45 H 0.05 2.26 4.85 -2.39 -0.01 2.24 16 46 H 0.06 2.14 6.44 -2.39 -0.02 2.13 16 47 H 0.25 15.60 8.73 -92.71 -0.81 14.79 16 48 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 49 H 0.08 1.69 8.13 -2.39 -0.02 1.68 16 50 H 0.10 1.90 5.86 -2.39 -0.01 1.89 16 Total: -1.00 -77.59 395.55 5.08 -72.50 By element: Atomic # 1 Polarization: 16.76 SS G_CDS: 0.79 Total: 17.55 kcal Atomic # 6 Polarization: -10.42 SS G_CDS: 7.70 Total: -2.72 kcal Atomic # 7 Polarization: -109.26 SS G_CDS: -5.17 Total: -114.42 kcal Atomic # 8 Polarization: -24.46 SS G_CDS: -0.05 Total: -24.51 kcal Atomic # 14 Polarization: 49.80 SS G_CDS: 1.80 Total: 51.60 kcal Total: -77.59 5.08 -72.50 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264016506.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.716 kcal (2) G-P(sol) polarization free energy of solvation -77.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.503 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds