Wall clock time and date at job start Wed Apr 1 2020 03:08:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38660 * 125.50716 * 2 1 4 4 C 1.38858 * 107.65261 * 180.02562 * 3 2 1 5 5 N 1.33984 * 132.58060 * 179.97438 * 4 3 2 6 6 C 1.31212 * 120.81256 * 179.77693 * 5 4 3 7 7 C 1.50706 * 119.85722 * 180.27091 * 6 5 4 8 8 C 1.40242 * 120.28418 * 0.50403 * 6 5 4 9 9 C 1.50696 * 120.27885 * 179.76090 * 8 6 5 10 10 C 1.52999 * 109.47558 * 269.72764 * 9 8 6 11 11 C 1.50696 * 109.47224 * 179.97438 * 10 9 8 12 12 O 1.21279 * 120.00235 * 359.97438 * 11 10 9 13 13 N 1.34780 * 119.99900 * 180.02562 * 11 10 9 14 14 C 1.46498 * 119.99912 * 359.97438 * 13 11 10 15 15 C 1.46495 * 120.00002 * 179.97438 * 13 11 10 16 16 H 1.09002 * 109.47308 * 359.97438 * 15 13 11 17 17 C 1.53001 * 109.47398 * 119.99746 * 15 13 11 18 18 C 1.50702 * 109.47171 * 239.99670 * 15 13 11 19 19 H 1.08001 * 120.00089 * 325.05166 * 18 15 13 20 20 C 1.37880 * 119.99796 * 145.04858 * 18 15 13 21 21 N 1.31514 * 119.99543 * 176.46253 * 20 18 15 22 22 Si 1.86794 * 120.00028 * 356.46680 * 20 18 15 23 23 H 1.48499 * 109.47255 * 274.92138 * 22 20 18 24 24 H 1.48497 * 109.47373 * 34.92801 * 22 20 18 25 25 H 1.48507 * 109.46963 * 154.92420 * 22 20 18 26 26 C 1.35528 * 119.44953 * 359.49047 * 8 6 5 27 27 C 1.50701 * 120.43950 * 180.22602 * 26 8 6 28 28 N 1.36520 * 119.12685 * 0.25150 * 26 8 6 29 29 N 1.31414 * 125.50542 * 180.02562 * 2 1 3 30 30 H 1.08997 * 109.47163 * 269.97429 * 1 2 3 31 31 H 1.09010 * 109.47172 * 29.96727 * 1 2 3 32 32 H 1.08995 * 109.47671 * 149.96705 * 1 2 3 33 33 H 1.08006 * 126.17496 * 0.04440 * 3 2 1 34 34 H 1.09002 * 109.46777 * 270.23213 * 7 6 5 35 35 H 1.08998 * 109.47297 * 30.23583 * 7 6 5 36 36 H 1.09000 * 109.46829 * 150.23819 * 7 6 5 37 37 H 1.08999 * 109.47585 * 149.72051 * 9 8 6 38 38 H 1.09002 * 109.46793 * 29.72769 * 9 8 6 39 39 H 1.08999 * 109.46794 * 59.99354 * 10 9 8 40 40 H 1.09002 * 109.47073 * 299.99834 * 10 9 8 41 41 H 1.09003 * 109.47307 * 270.00158 * 14 13 11 42 42 H 1.09006 * 109.47299 * 30.00251 * 14 13 11 43 43 H 1.09005 * 109.47170 * 150.00291 * 14 13 11 44 44 H 1.09004 * 109.47201 * 65.54154 * 17 15 13 45 45 H 1.08997 * 109.47748 * 185.54369 * 17 15 13 46 46 H 1.09001 * 109.47150 * 305.54548 * 17 15 13 47 47 H 0.97005 * 119.99553 * 179.97438 * 21 20 18 48 48 H 1.09004 * 109.46887 * 89.99970 * 27 26 8 49 49 H 1.08997 * 109.47631 * 210.00011 * 27 26 8 50 50 H 1.08998 * 109.47075 * 330.00580 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3123 1.1287 0.0000 4 6 3.6340 0.7030 -0.0006 5 7 4.7994 1.3641 -0.0013 6 6 5.9400 0.7155 0.0026 7 6 7.2382 1.4809 0.0079 8 6 5.9562 -0.6868 -0.0030 9 6 7.2663 -1.4315 -0.0039 10 6 7.7087 -1.6837 -1.4467 11 6 9.0191 -2.4278 -1.4475 12 8 9.5475 -2.7266 -0.3976 13 7 9.6044 -2.7604 -2.6151 14 6 8.9665 -2.3990 -3.8834 15 6 10.8786 -3.4834 -2.6160 16 1 11.1956 -3.6622 -1.5885 17 6 10.7052 -4.8217 -3.3370 18 6 11.9222 -2.6611 -3.3272 19 1 11.6441 -2.0504 -4.1734 20 6 13.2321 -2.6885 -2.8976 21 7 14.1553 -2.0263 -3.5599 22 14 13.6953 -3.6664 -1.3749 23 1 13.4668 -2.8363 -0.1650 24 1 12.8592 -4.8914 -1.3000 25 1 15.1283 -4.0490 -1.4493 26 6 4.7839 -1.3667 -0.0021 27 6 4.7753 -2.8737 -0.0029 28 7 3.6107 -0.6685 -0.0008 29 7 2.2702 -1.0698 -0.0005 30 1 -0.3633 -0.0005 1.0276 31 1 -0.3634 0.8904 -0.5134 32 1 -0.3634 -0.8896 -0.5143 33 1 1.9728 2.1541 0.0007 34 1 7.5529 1.6696 -1.0185 35 1 7.0984 2.4300 0.5254 36 1 8.0023 0.8966 0.5206 37 1 7.1429 -2.3847 0.5102 38 1 8.0224 -0.8372 0.5093 39 1 7.8322 -0.7305 -1.9607 40 1 6.9527 -2.2779 -1.9599 41 1 8.3011 -3.2032 -4.1976 42 1 8.3917 -1.4820 -3.7528 43 1 9.7319 -2.2429 -4.6437 44 1 10.4847 -4.6416 -4.3892 45 1 11.6242 -5.4017 -3.2525 46 1 9.8832 -5.3751 -2.8831 47 1 15.0768 -2.0452 -3.2574 48 1 4.7744 -3.2376 1.0246 49 1 3.8827 -3.2317 -0.5159 50 1 5.6626 -3.2418 -0.5179 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264016507.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:08:53 Heat of formation + Delta-G solvation = 66.092059 kcal Electronic energy + Delta-G solvation = -30260.270373 eV Core-core repulsion = 26289.319701 eV Total energy + Delta-G solvation = -3970.950673 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.58340 -39.60552 -38.80064 -35.81895 -35.41715 -34.36340 -32.77736 -31.50063 -31.02050 -30.25132 -28.62870 -28.39325 -27.57782 -26.24649 -25.32031 -24.28553 -22.21028 -21.88868 -20.75837 -20.21762 -18.63483 -18.33368 -17.36573 -16.76844 -16.46517 -16.16506 -15.58698 -15.48376 -15.10644 -14.46401 -14.20552 -13.99531 -13.83922 -13.70792 -13.64722 -13.26367 -13.22776 -13.03235 -12.97935 -12.89750 -12.58914 -12.56965 -12.39333 -12.29506 -12.08719 -12.06900 -11.80597 -11.67197 -11.42513 -11.18186 -11.12104 -10.99813 -10.75520 -10.70073 -10.48061 -9.95446 -9.83779 -9.39209 -9.30411 -9.06211 -8.66464 -7.98893 -7.74657 -6.21576 -4.24315 0.33936 0.68122 1.83277 2.33909 3.16573 3.20825 3.27803 3.34750 3.40916 3.55661 3.73333 3.80869 4.02087 4.33822 4.45625 4.56547 4.76407 4.86485 4.98281 4.99036 5.08543 5.11256 5.15131 5.19631 5.23195 5.31844 5.34749 5.36401 5.40286 5.42738 5.52479 5.59073 5.65246 5.70997 5.76302 5.88214 5.91247 5.98625 6.17941 6.21728 6.25109 6.29436 6.34262 6.41703 6.53241 6.87151 7.01838 7.27636 7.41030 7.49420 7.58182 8.07299 8.44257 8.78762 8.85660 9.40655 10.90177 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.021301 B = 0.002394 C = 0.002317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1314.156286 B =11694.771231 C =12084.258230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.111 3.889 3 C -0.275 4.275 4 C 0.268 3.732 5 N -0.476 5.476 6 C 0.223 3.777 7 C -0.116 4.116 8 C -0.185 4.185 9 C -0.052 4.052 10 C -0.137 4.137 11 C 0.504 3.496 12 O -0.557 6.557 13 N -0.588 5.588 14 C 0.081 3.919 15 C 0.222 3.778 16 H 0.065 0.935 17 C -0.147 4.147 18 C -0.526 4.526 19 H 0.078 0.922 20 C 0.079 3.921 21 N -0.891 5.891 22 Si 0.875 3.125 23 H -0.271 1.271 24 H -0.264 1.264 25 H -0.288 1.288 26 C 0.196 3.804 27 C -0.122 4.122 28 N -0.310 5.310 29 N -0.318 5.318 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.076 0.924 33 H 0.159 0.841 34 H 0.094 0.906 35 H 0.086 0.914 36 H 0.093 0.907 37 H 0.088 0.912 38 H 0.097 0.903 39 H 0.093 0.907 40 H 0.086 0.914 41 H 0.043 0.957 42 H 0.056 0.944 43 H 0.082 0.918 44 H 0.049 0.951 45 H 0.055 0.945 46 H 0.025 0.975 47 H 0.267 0.733 48 H 0.094 0.906 49 H 0.087 0.913 50 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.823 3.389 5.608 23.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.047 4.047 3 C -0.305 4.305 4 C 0.040 3.960 5 N -0.189 5.189 6 C 0.060 3.940 7 C -0.172 4.172 8 C -0.192 4.192 9 C -0.091 4.091 10 C -0.177 4.177 11 C 0.291 3.709 12 O -0.437 6.437 13 N -0.318 5.318 14 C -0.063 4.063 15 C 0.122 3.878 16 H 0.082 0.918 17 C -0.205 4.205 18 C -0.564 4.564 19 H 0.096 0.904 20 C -0.125 4.125 21 N -0.528 5.528 22 Si 0.702 3.298 23 H -0.196 1.196 24 H -0.189 1.189 25 H -0.214 1.214 26 C 0.080 3.920 27 C -0.179 4.179 28 N -0.080 5.080 29 N -0.144 5.144 30 H 0.100 0.900 31 H 0.101 0.899 32 H 0.095 0.905 33 H 0.176 0.824 34 H 0.112 0.888 35 H 0.104 0.896 36 H 0.112 0.888 37 H 0.107 0.893 38 H 0.115 0.885 39 H 0.111 0.889 40 H 0.105 0.895 41 H 0.061 0.939 42 H 0.075 0.925 43 H 0.101 0.899 44 H 0.068 0.932 45 H 0.074 0.926 46 H 0.044 0.956 47 H 0.076 0.924 48 H 0.112 0.888 49 H 0.106 0.894 50 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -22.666 2.900 6.109 23.654 hybrid contribution 0.358 -0.267 0.518 0.684 sum -22.308 2.633 6.628 23.421 Atomic orbital electron populations 1.20261 0.85700 1.03796 1.03436 1.22241 0.97230 0.90181 0.95065 1.20758 0.87503 1.00120 1.22165 1.20729 0.94719 0.80311 1.00209 1.68089 0.95742 1.36693 1.18422 1.21866 0.94192 0.90449 0.87521 1.20979 0.91024 1.00620 1.04621 1.20195 0.95078 0.94470 1.09418 1.20278 0.90986 1.00888 0.96939 1.21705 0.96358 1.01957 0.97682 1.20354 0.86158 0.80151 0.84222 1.90646 1.65701 1.56200 1.31144 1.48331 1.23347 1.55403 1.04751 1.21648 0.98125 0.98631 0.87859 1.19303 0.81021 0.89227 0.98298 0.91761 1.22219 0.99657 0.98196 1.00469 1.21108 0.91485 1.27910 1.15890 0.90400 1.24966 0.96329 0.94688 0.96506 1.69888 1.01876 1.41546 1.39471 0.86884 0.77340 0.81430 0.84108 1.19588 1.18865 1.21406 1.20504 0.81547 0.95941 0.93984 1.21057 1.05376 0.86685 1.04790 1.47039 1.05878 1.07145 1.47963 1.77760 0.82675 1.21447 1.32564 0.89967 0.89854 0.90490 0.82383 0.88753 0.89566 0.88824 0.89341 0.88487 0.88879 0.89515 0.93851 0.92490 0.89914 0.93183 0.92647 0.95566 0.92353 0.88806 0.89411 0.88259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.49 10.43 36.00 0.38 -0.11 16 2 C 0.11 1.25 7.16 -82.62 -0.59 0.66 16 3 C -0.27 -3.33 10.83 -39.20 -0.42 -3.75 16 4 C 0.27 3.75 7.92 -155.51 -1.23 2.52 16 5 N -0.48 -6.47 10.40 -8.45 -0.09 -6.56 16 6 C 0.22 2.62 6.83 -82.10 -0.56 2.06 16 7 C -0.12 -1.07 9.80 36.01 0.35 -0.71 16 8 C -0.19 -2.09 5.12 -104.84 -0.54 -2.62 16 9 C -0.05 -0.59 3.56 -27.89 -0.10 -0.69 16 10 C -0.14 -1.68 4.10 -27.89 -0.11 -1.79 16 11 C 0.50 9.01 7.67 -10.99 -0.08 8.93 16 12 O -0.56 -11.97 15.31 5.56 0.09 -11.89 16 13 N -0.59 -11.23 2.75 -175.26 -0.48 -11.72 16 14 C 0.08 1.22 9.40 59.85 0.56 1.79 16 15 C 0.22 5.08 2.27 -69.08 -0.16 4.93 16 16 H 0.06 1.62 4.11 -51.93 -0.21 1.41 16 17 C -0.15 -2.96 9.09 37.16 0.34 -2.62 16 18 C -0.53 -13.87 8.72 -34.44 -0.30 -14.17 16 19 H 0.08 2.17 6.82 -52.49 -0.36 1.82 16 20 C 0.08 2.20 5.47 -17.82 -0.10 2.10 16 21 N -0.89 -26.10 13.96 55.43 0.77 -25.33 16 22 Si 0.88 21.53 26.91 -169.99 -4.57 16.96 16 23 H -0.27 -6.80 7.11 56.52 0.40 -6.39 16 24 H -0.26 -6.26 6.73 56.52 0.38 -5.88 16 25 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 26 C 0.20 2.30 6.86 -81.47 -0.56 1.74 16 27 C -0.12 -1.12 9.28 36.01 0.33 -0.79 16 28 N -0.31 -4.20 3.90 -8.49 -0.03 -4.23 16 29 N -0.32 -4.22 12.52 33.52 0.42 -3.80 16 30 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.08 0.40 8.14 -51.92 -0.42 -0.02 16 32 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.16 1.58 8.06 -52.48 -0.42 1.15 16 34 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.09 0.81 6.00 -51.93 -0.31 0.50 16 37 H 0.09 0.99 6.66 -51.93 -0.35 0.64 16 38 H 0.10 1.13 5.96 -51.93 -0.31 0.82 16 39 H 0.09 1.04 7.40 -51.93 -0.38 0.66 16 40 H 0.09 0.91 7.36 -51.93 -0.38 0.52 16 41 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.06 0.70 6.44 -51.93 -0.33 0.37 16 43 H 0.08 1.39 6.56 -51.93 -0.34 1.05 16 44 H 0.05 0.94 7.86 -51.93 -0.41 0.54 16 45 H 0.05 1.14 7.97 -51.93 -0.41 0.73 16 46 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 47 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 48 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 49 H 0.09 0.81 8.13 -51.93 -0.42 0.39 16 50 H 0.10 0.82 5.86 -51.93 -0.30 0.52 16 LS Contribution 399.84 15.07 6.03 6.03 Total: -1.00 -34.36 399.84 -8.16 -42.52 By element: Atomic # 1 Polarization: 8.07 SS G_CDS: -7.49 Total: 0.58 kcal Atomic # 6 Polarization: 0.23 SS G_CDS: -2.79 Total: -2.56 kcal Atomic # 7 Polarization: -52.23 SS G_CDS: 0.59 Total: -51.64 kcal Atomic # 8 Polarization: -11.97 SS G_CDS: 0.09 Total: -11.89 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -4.57 Total: 16.96 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -34.36 -8.16 -42.52 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264016507.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.608 kcal (2) G-P(sol) polarization free energy of solvation -34.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.516 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds