Wall clock time and date at job start Wed Apr 1 2020 03:08:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38660 * 125.50716 * 2 1 4 4 C 1.38858 * 107.65261 * 180.02562 * 3 2 1 5 5 N 1.33984 * 132.58060 * 179.97438 * 4 3 2 6 6 C 1.31212 * 120.81256 * 179.77693 * 5 4 3 7 7 C 1.50706 * 119.85722 * 180.27091 * 6 5 4 8 8 C 1.40242 * 120.28418 * 0.50403 * 6 5 4 9 9 C 1.50696 * 120.27885 * 179.76090 * 8 6 5 10 10 C 1.52999 * 109.47558 * 269.72764 * 9 8 6 11 11 C 1.50696 * 109.47224 * 179.97438 * 10 9 8 12 12 O 1.21279 * 120.00235 * 359.97438 * 11 10 9 13 13 N 1.34780 * 119.99900 * 180.02562 * 11 10 9 14 14 C 1.46498 * 119.99912 * 359.97438 * 13 11 10 15 15 C 1.46495 * 120.00002 * 179.97438 * 13 11 10 16 16 H 1.09002 * 109.47308 * 359.97438 * 15 13 11 17 17 C 1.53001 * 109.47398 * 119.99746 * 15 13 11 18 18 C 1.50702 * 109.47171 * 239.99670 * 15 13 11 19 19 H 1.08001 * 120.00089 * 325.05166 * 18 15 13 20 20 C 1.37880 * 119.99796 * 145.04858 * 18 15 13 21 21 N 1.31514 * 119.99543 * 176.46253 * 20 18 15 22 22 Si 1.86794 * 120.00028 * 356.46680 * 20 18 15 23 23 H 1.48499 * 109.47255 * 274.92138 * 22 20 18 24 24 H 1.48497 * 109.47373 * 34.92801 * 22 20 18 25 25 H 1.48507 * 109.46963 * 154.92420 * 22 20 18 26 26 C 1.35528 * 119.44953 * 359.49047 * 8 6 5 27 27 C 1.50701 * 120.43950 * 180.22602 * 26 8 6 28 28 N 1.36520 * 119.12685 * 0.25150 * 26 8 6 29 29 N 1.31414 * 125.50542 * 180.02562 * 2 1 3 30 30 H 1.08997 * 109.47163 * 269.97429 * 1 2 3 31 31 H 1.09010 * 109.47172 * 29.96727 * 1 2 3 32 32 H 1.08995 * 109.47671 * 149.96705 * 1 2 3 33 33 H 1.08006 * 126.17496 * 0.04440 * 3 2 1 34 34 H 1.09002 * 109.46777 * 270.23213 * 7 6 5 35 35 H 1.08998 * 109.47297 * 30.23583 * 7 6 5 36 36 H 1.09000 * 109.46829 * 150.23819 * 7 6 5 37 37 H 1.08999 * 109.47585 * 149.72051 * 9 8 6 38 38 H 1.09002 * 109.46793 * 29.72769 * 9 8 6 39 39 H 1.08999 * 109.46794 * 59.99354 * 10 9 8 40 40 H 1.09002 * 109.47073 * 299.99834 * 10 9 8 41 41 H 1.09003 * 109.47307 * 270.00158 * 14 13 11 42 42 H 1.09006 * 109.47299 * 30.00251 * 14 13 11 43 43 H 1.09005 * 109.47170 * 150.00291 * 14 13 11 44 44 H 1.09004 * 109.47201 * 65.54154 * 17 15 13 45 45 H 1.08997 * 109.47748 * 185.54369 * 17 15 13 46 46 H 1.09001 * 109.47150 * 305.54548 * 17 15 13 47 47 H 0.97005 * 119.99553 * 179.97438 * 21 20 18 48 48 H 1.09004 * 109.46887 * 89.99970 * 27 26 8 49 49 H 1.08997 * 109.47631 * 210.00011 * 27 26 8 50 50 H 1.08998 * 109.47075 * 330.00580 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3123 1.1287 0.0000 4 6 3.6340 0.7030 -0.0006 5 7 4.7994 1.3641 -0.0013 6 6 5.9400 0.7155 0.0026 7 6 7.2382 1.4809 0.0079 8 6 5.9562 -0.6868 -0.0030 9 6 7.2663 -1.4315 -0.0039 10 6 7.7087 -1.6837 -1.4467 11 6 9.0191 -2.4278 -1.4475 12 8 9.5475 -2.7266 -0.3976 13 7 9.6044 -2.7604 -2.6151 14 6 8.9665 -2.3990 -3.8834 15 6 10.8786 -3.4834 -2.6160 16 1 11.1956 -3.6622 -1.5885 17 6 10.7052 -4.8217 -3.3370 18 6 11.9222 -2.6611 -3.3272 19 1 11.6441 -2.0504 -4.1734 20 6 13.2321 -2.6885 -2.8976 21 7 14.1553 -2.0263 -3.5599 22 14 13.6953 -3.6664 -1.3749 23 1 13.4668 -2.8363 -0.1650 24 1 12.8592 -4.8914 -1.3000 25 1 15.1283 -4.0490 -1.4493 26 6 4.7839 -1.3667 -0.0021 27 6 4.7753 -2.8737 -0.0029 28 7 3.6107 -0.6685 -0.0008 29 7 2.2702 -1.0698 -0.0005 30 1 -0.3633 -0.0005 1.0276 31 1 -0.3634 0.8904 -0.5134 32 1 -0.3634 -0.8896 -0.5143 33 1 1.9728 2.1541 0.0007 34 1 7.5529 1.6696 -1.0185 35 1 7.0984 2.4300 0.5254 36 1 8.0023 0.8966 0.5206 37 1 7.1429 -2.3847 0.5102 38 1 8.0224 -0.8372 0.5093 39 1 7.8322 -0.7305 -1.9607 40 1 6.9527 -2.2779 -1.9599 41 1 8.3011 -3.2032 -4.1976 42 1 8.3917 -1.4820 -3.7528 43 1 9.7319 -2.2429 -4.6437 44 1 10.4847 -4.6416 -4.3892 45 1 11.6242 -5.4017 -3.2525 46 1 9.8832 -5.3751 -2.8831 47 1 15.0768 -2.0452 -3.2574 48 1 4.7744 -3.2376 1.0246 49 1 3.8827 -3.2317 -0.5159 50 1 5.6626 -3.2418 -0.5179 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264016507.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:08:52 Heat of formation + Delta-G solvation = 45.703985 kcal Electronic energy + Delta-G solvation = -30261.154467 eV Core-core repulsion = 26289.319701 eV Total energy + Delta-G solvation = -3971.834766 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -43.46407 -40.89542 -39.81811 -37.22923 -36.47332 -35.29453 -34.66077 -32.76362 -31.81030 -31.60513 -29.33535 -29.31708 -28.42561 -27.56603 -27.23790 -25.32141 -23.12255 -22.88519 -22.14625 -21.10540 -19.78501 -19.50813 -19.20771 -17.97143 -17.44053 -17.35778 -17.05464 -16.67984 -16.03460 -16.02770 -15.15858 -15.04255 -14.80242 -14.66156 -14.54384 -14.52558 -14.30454 -14.16406 -13.95175 -13.81394 -13.76189 -13.66335 -13.52366 -13.43051 -13.15285 -13.04152 -12.95222 -12.92267 -12.76703 -12.61063 -12.57060 -12.24715 -12.06024 -11.88504 -11.79477 -11.52331 -11.23886 -10.86607 -10.77661 -10.60062 -10.16554 -9.28703 -8.88943 -8.34345 -6.38142 -0.52610 -0.22321 0.97876 1.30205 1.36235 1.43439 1.50036 1.84057 2.23013 2.29833 2.39575 2.72027 2.97674 3.07927 3.20271 3.51217 3.74910 3.86760 4.01221 4.09763 4.16895 4.25990 4.28102 4.40854 4.43289 4.46703 4.54243 4.62612 4.63882 4.69369 4.70678 4.71024 4.73792 4.76850 4.79527 4.85972 4.87195 4.98643 5.04147 5.07775 5.08369 5.10497 5.18699 5.34047 5.37880 5.45468 5.57015 5.61923 5.86470 6.18680 6.40241 6.59535 6.68167 6.83061 7.27315 7.44674 8.80796 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.021301 B = 0.002394 C = 0.002317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1314.156286 B =11694.771231 C =12084.258230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.112 3.888 3 C -0.286 4.286 4 C 0.242 3.758 5 N -0.499 5.499 6 C 0.220 3.780 7 C -0.115 4.115 8 C -0.184 4.184 9 C -0.044 4.044 10 C -0.123 4.123 11 C 0.499 3.501 12 O -0.597 6.597 13 N -0.599 5.599 14 C 0.078 3.922 15 C 0.221 3.779 16 H 0.042 0.958 17 C -0.139 4.139 18 C -0.517 4.517 19 H 0.054 0.946 20 C 0.026 3.974 21 N -0.936 5.936 22 Si 0.926 3.074 23 H -0.281 1.281 24 H -0.250 1.250 25 H -0.282 1.282 26 C 0.189 3.811 27 C -0.119 4.119 28 N -0.322 5.322 29 N -0.342 5.342 30 H 0.097 0.903 31 H 0.103 0.897 32 H 0.082 0.918 33 H 0.174 0.826 34 H 0.104 0.896 35 H 0.091 0.909 36 H 0.099 0.901 37 H 0.090 0.910 38 H 0.093 0.907 39 H 0.109 0.891 40 H 0.114 0.886 41 H 0.072 0.928 42 H 0.087 0.913 43 H 0.059 0.941 44 H 0.059 0.941 45 H 0.046 0.954 46 H 0.049 0.951 47 H 0.267 0.733 48 H 0.103 0.897 49 H 0.086 0.914 50 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.241 2.794 5.825 26.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.047 4.047 3 C -0.316 4.316 4 C 0.014 3.986 5 N -0.213 5.213 6 C 0.057 3.943 7 C -0.172 4.172 8 C -0.190 4.190 9 C -0.082 4.082 10 C -0.163 4.163 11 C 0.289 3.711 12 O -0.480 6.480 13 N -0.329 5.329 14 C -0.064 4.064 15 C 0.119 3.881 16 H 0.060 0.940 17 C -0.198 4.198 18 C -0.555 4.555 19 H 0.072 0.928 20 C -0.173 4.173 21 N -0.575 5.575 22 Si 0.752 3.248 23 H -0.207 1.207 24 H -0.174 1.174 25 H -0.208 1.208 26 C 0.074 3.926 27 C -0.175 4.175 28 N -0.093 5.093 29 N -0.168 5.168 30 H 0.115 0.885 31 H 0.122 0.878 32 H 0.101 0.899 33 H 0.191 0.809 34 H 0.123 0.877 35 H 0.109 0.891 36 H 0.117 0.883 37 H 0.109 0.891 38 H 0.111 0.889 39 H 0.127 0.873 40 H 0.132 0.868 41 H 0.091 0.909 42 H 0.106 0.894 43 H 0.078 0.922 44 H 0.078 0.922 45 H 0.065 0.935 46 H 0.068 0.932 47 H 0.076 0.924 48 H 0.122 0.878 49 H 0.105 0.895 50 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -25.117 2.299 6.307 25.998 hybrid contribution 0.995 -0.022 0.427 1.083 sum -24.122 2.277 6.735 25.148 Atomic orbital electron populations 1.20448 0.82643 1.05097 1.04752 1.22941 0.99029 0.89301 0.93381 1.21136 0.87247 1.01216 1.22035 1.21148 0.95501 0.80933 1.00981 1.68125 0.96152 1.37177 1.19822 1.22250 0.94490 0.90987 0.86527 1.21061 0.90002 1.00718 1.05376 1.20094 0.94816 0.94198 1.09907 1.20172 0.90770 1.00963 0.96337 1.21671 0.93579 1.02181 0.98868 1.21216 0.87458 0.79437 0.83001 1.90628 1.67187 1.57666 1.32498 1.48272 1.22386 1.55492 1.06776 1.21846 0.97869 1.01248 0.85436 1.19061 0.82108 0.90304 0.96659 0.94006 1.22077 1.00181 0.96635 1.00916 1.21377 0.92305 1.27005 1.14859 0.92833 1.25645 0.96695 0.95981 0.98962 1.69996 1.02267 1.43946 1.41324 0.86066 0.77491 0.80643 0.80611 1.20721 1.17402 1.20756 1.20958 0.81326 0.97120 0.93173 1.21125 1.05835 0.85015 1.05553 1.47216 1.06320 1.07164 1.48555 1.77709 0.82874 1.22591 1.33640 0.88477 0.87791 0.89929 0.80905 0.87735 0.89051 0.88276 0.89107 0.88917 0.87258 0.86817 0.90923 0.89422 0.92207 0.92173 0.93528 0.93228 0.92383 0.87845 0.89511 0.87069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.78 10.43 71.23 0.74 -0.04 16 2 C 0.11 2.36 7.16 42.72 0.31 2.66 16 3 C -0.29 -6.64 10.83 22.52 0.24 -6.40 16 4 C 0.24 6.59 7.92 133.13 1.05 7.65 16 5 N -0.50 -13.20 10.40 -180.66 -1.88 -15.08 16 6 C 0.22 4.89 6.83 43.14 0.29 5.18 16 7 C -0.11 -1.95 9.80 71.24 0.70 -1.25 16 8 C -0.18 -3.82 5.12 -20.01 -0.10 -3.92 16 9 C -0.04 -0.89 3.56 29.85 0.11 -0.79 16 10 C -0.12 -2.65 4.10 29.85 0.12 -2.53 16 11 C 0.50 16.84 7.67 87.66 0.67 17.51 16 12 O -0.60 -25.05 15.31 -3.03 -0.05 -25.09 16 13 N -0.60 -21.78 2.75 -826.79 -2.28 -24.05 16 14 C 0.08 2.16 9.40 127.77 1.20 3.36 16 15 C 0.22 9.92 2.27 44.25 0.10 10.02 16 16 H 0.04 2.08 4.11 -2.39 -0.01 2.07 16 17 C -0.14 -5.36 9.09 71.98 0.65 -4.71 16 18 C -0.52 -27.50 8.72 25.60 0.22 -27.27 16 19 H 0.05 3.05 6.82 -2.91 -0.02 3.03 16 20 C 0.03 1.49 5.47 84.66 0.46 1.95 16 21 N -0.94 -56.09 13.96 21.45 0.30 -55.79 16 22 Si 0.93 44.85 26.91 68.60 1.85 46.70 16 23 H -0.28 -13.97 7.11 99.48 0.71 -13.27 16 24 H -0.25 -11.41 6.73 99.48 0.67 -10.74 16 25 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 26 C 0.19 4.15 6.86 41.20 0.28 4.44 16 27 C -0.12 -1.93 9.28 71.24 0.66 -1.27 16 28 N -0.32 -8.40 3.90 -180.76 -0.71 -9.10 16 29 N -0.34 -8.69 12.52 -47.85 -0.60 -9.29 16 30 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.10 0.71 8.14 -2.38 -0.02 0.69 16 32 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.17 3.25 8.06 -2.91 -0.02 3.22 16 34 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 35 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 36 H 0.10 1.57 6.00 -2.39 -0.01 1.56 16 37 H 0.09 1.84 6.66 -2.39 -0.02 1.82 16 38 H 0.09 2.00 5.96 -2.39 -0.01 1.99 16 39 H 0.11 2.06 7.40 -2.39 -0.02 2.04 16 40 H 0.11 1.89 7.36 -2.39 -0.02 1.87 16 41 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 42 H 0.09 1.85 6.44 -2.38 -0.02 1.83 16 43 H 0.06 1.93 6.56 -2.38 -0.02 1.92 16 44 H 0.06 2.16 7.86 -2.38 -0.02 2.14 16 45 H 0.05 1.84 7.97 -2.39 -0.02 1.82 16 46 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 47 H 0.27 15.13 8.31 -92.70 -0.77 14.36 16 48 H 0.10 1.49 8.14 -2.38 -0.02 1.47 16 49 H 0.09 1.44 8.13 -2.39 -0.02 1.42 16 50 H 0.11 1.52 5.86 -2.39 -0.01 1.50 16 Total: -1.00 -76.35 399.84 5.29 -71.06 By element: Atomic # 1 Polarization: 15.14 SS G_CDS: 0.92 Total: 16.06 kcal Atomic # 6 Polarization: -3.14 SS G_CDS: 7.72 Total: 4.59 kcal Atomic # 7 Polarization: -108.15 SS G_CDS: -5.16 Total: -113.31 kcal Atomic # 8 Polarization: -25.05 SS G_CDS: -0.05 Total: -25.09 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 1.85 Total: 46.70 kcal Total: -76.35 5.29 -71.06 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264016507.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.763 kcal (2) G-P(sol) polarization free energy of solvation -76.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.059 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds