Wall clock time and date at job start Wed Apr 1 2020 03:17:56
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50693 * 1
3 3 C 1.38229 * 119.62265 * 2 1
4 4 C 1.38625 * 119.16334 * 179.97438 * 3 2 1
5 5 C 1.38675 * 118.41932 * 359.97438 * 4 3 2
6 6 C 1.50706 * 120.41449 * 180.02562 * 5 4 3
7 7 C 1.52997 * 109.47238 * 299.99983 * 6 5 4
8 8 C 1.52992 * 109.47161 * 60.00519 * 6 5 4
9 9 N 1.46902 * 109.46577 * 180.02562 * 6 5 4
10 10 C 1.46905 * 110.99800 * 180.02562 * 9 6 5
11 11 C 1.50698 * 109.47191 * 179.97438 * 10 9 6
12 12 O 1.21284 * 120.00086 * 0.02562 * 11 10 9
13 13 N 1.34774 * 119.99864 * 179.97438 * 11 10 9
14 14 C 1.46508 * 120.00070 * 180.02562 * 13 11 10
15 15 C 1.50695 * 109.47252 * 89.99953 * 14 13 11
16 16 H 1.08007 * 119.99723 * 0.02562 * 15 14 13
17 17 C 1.37876 * 120.00031 * 180.02562 * 15 14 13
18 18 N 1.31512 * 119.99958 * 359.97438 * 17 15 14
19 19 Si 1.86808 * 119.99839 * 180.02562 * 17 15 14
20 20 H 1.48498 * 109.46932 * 359.97438 * 19 17 15
21 21 H 1.48500 * 109.46720 * 119.99737 * 19 17 15
22 22 H 1.48491 * 109.47070 * 239.99660 * 19 17 15
23 23 C 1.46504 * 120.00172 * 0.02562 * 13 11 10
24 24 C 1.52996 * 109.47169 * 89.99936 * 23 13 11
25 25 C 1.47192 * 109.47456 * 180.02562 * 24 23 13
26 26 N 9.18173 * 151.84744 * 340.48746 * 4 1 2
27 27 C 1.38181 * 119.16694 * 0.27964 * 5 4 3
28 28 N 1.31860 * 119.61562 * 179.97438 * 2 1 3
29 29 H 1.09009 * 109.46992 * 90.00131 * 1 2 3
30 30 H 1.09000 * 109.47526 * 210.00169 * 1 2 3
31 31 H 1.09001 * 109.46947 * 330.00680 * 1 2 3
32 32 H 1.07997 * 120.41683 * 359.97438 * 3 2 1
33 33 H 1.07999 * 120.78872 * 179.97438 * 4 3 2
34 34 H 1.09002 * 109.47153 * 180.02562 * 7 6 5
35 35 H 1.09001 * 109.46832 * 60.00314 * 7 6 5
36 36 H 1.09004 * 109.47261 * 300.00295 * 7 6 5
37 37 H 1.09001 * 109.47066 * 299.99783 * 8 6 5
38 38 H 1.08996 * 109.47747 * 59.99449 * 8 6 5
39 39 H 1.09002 * 109.47103 * 179.97438 * 8 6 5
40 40 H 1.00896 * 111.00594 * 56.04567 * 9 6 5
41 41 H 1.08993 * 109.47004 * 300.00108 * 10 9 6
42 42 H 1.09002 * 109.47091 * 59.99861 * 10 9 6
43 43 H 1.08994 * 109.46812 * 210.00154 * 14 13 11
44 44 H 1.09000 * 109.46903 * 330.00119 * 14 13 11
45 45 H 0.97005 * 119.99741 * 180.02562 * 18 17 15
46 46 H 1.08995 * 109.47092 * 210.00169 * 23 13 11
47 47 H 1.08995 * 109.46905 * 329.99845 * 23 13 11
48 48 H 1.09004 * 109.47024 * 300.00193 * 24 23 13
49 49 H 1.09003 * 109.46991 * 59.99983 * 24 23 13
50 50 H 1.07994 * 119.62233 * 179.70207 * 27 5 4
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5069 0.0000 0.0000
3 6 2.1902 1.2016 0.0000
4 6 3.5764 1.1905 0.0005
5 6 4.2266 -0.0344 0.0016
6 6 5.7322 -0.0989 0.0028
7 6 6.2737 0.5992 -1.2463
8 6 6.2717 0.6003 1.2522
9 7 6.1620 -1.5037 0.0032
10 6 7.6275 -1.6058 0.0050
11 6 8.0299 -3.0581 0.0059
12 8 7.1796 -3.9229 0.0047
13 7 9.3346 -3.3958 0.0071
14 6 9.7258 -4.8077 0.0074
15 6 9.8612 -5.2918 -1.4132
16 1 9.6749 -4.6153 -2.2343
17 6 10.2228 -6.5983 -1.6648
18 7 10.4502 -7.4218 -0.6650
19 14 10.3913 -7.1982 -3.4259
20 1 10.0842 -6.0850 -4.3595
21 1 11.7802 -7.6701 -3.6572
22 1 9.4430 -8.3165 -3.6607
23 6 10.3617 -2.3511 0.0080
24 6 10.7180 -1.9875 1.4507
25 6 11.7495 -0.9374 1.4517
26 7 12.5472 -0.1276 1.4469
27 6 3.4766 -1.1949 -0.0038
28 7 2.1586 -1.1463 0.0005
29 1 -0.3633 0.0000 -1.0278
30 1 -0.3634 -0.8899 0.5138
31 1 -0.3633 0.8901 0.5137
32 1 1.6508 2.1373 -0.0004
33 1 4.1366 2.1138 0.0001
34 1 7.3627 0.5522 -1.2456
35 1 5.9547 1.6415 -1.2470
36 1 5.8893 0.1011 -2.1364
37 1 5.9527 1.6426 1.2515
38 1 5.8860 0.1029 2.1420
39 1 7.3607 0.5532 1.2532
40 1 5.7654 -2.0034 -0.7784
41 1 8.0267 -1.1184 -0.8844
42 1 8.0246 -1.1185 0.8955
43 1 10.6800 -4.9201 0.5221
44 1 8.9647 -5.3954 0.5206
45 1 10.7050 -8.3409 -0.8420
46 1 11.2515 -2.7160 -0.5051
47 1 9.9823 -1.4682 -0.5062
48 1 9.8282 -1.6226 1.9638
49 1 11.0974 -2.8705 1.9649
50 1 3.9753 -2.1528 -0.0079
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000353570900.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:17:56
Heat of formation + Delta-G solvation = 30.030220 kcal
Electronic energy + Delta-G solvation = -29930.774566 eV
Core-core repulsion = 25958.260135 eV
Total energy + Delta-G solvation = -3972.514431 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 344.195 amu
Computer time = 0.87 seconds
Orbital eigenvalues (eV)
-40.75136 -39.42159 -37.76655 -36.83578 -35.23131 -33.29939 -32.80844 -32.47898
-30.88123 -30.74820 -28.21719 -27.59311 -27.54550 -25.77864 -24.02778 -23.51620
-22.94973 -22.07100 -19.65576 -18.77862 -17.72788 -17.20893 -16.81964 -16.48004
-16.14534 -15.77160 -15.36744 -15.14109 -14.76280 -14.69907 -14.48249 -14.39795
-13.98499 -13.85709 -13.67376 -13.38247 -13.25059 -13.11928 -12.81666 -12.50968
-12.47804 -12.44935 -12.36960 -12.22753 -12.15387 -12.01551 -11.76979 -11.51165
-11.39448 -11.32236 -11.19823 -10.99543 -10.86761 -10.64429 -10.20534 -9.92635
-9.70326 -9.49058 -9.06831 -8.89966 -8.48681 -8.43353 -7.85119 -6.09969
-4.14597 0.97155 1.15786 2.69505 2.77834 3.27009 3.29072 3.35779
3.38240 3.48705 3.63747 3.92957 4.12468 4.28158 4.41233 4.49212
4.55282 4.73964 4.81048 4.85751 4.93517 4.99917 5.06985 5.09638
5.21746 5.25541 5.26812 5.28708 5.34474 5.35935 5.39435 5.47661
5.49006 5.60812 5.62970 5.67840 5.80196 5.81973 5.85685 5.97759
6.03145 6.04427 6.14817 6.60071 6.76027 6.99962 7.25476 7.36666
7.42531 7.54538 7.86166 7.94246 8.16182 8.25561 8.83469 8.98760
9.51135 10.98156
Molecular weight = 344.20amu
Principal moments of inertia in cm(-1)
A = 0.009699 B = 0.002860 C = 0.002344
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2886.095599 B = 9787.086324 C =11944.275869
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.103 4.103
2 C 0.118 3.882
3 C -0.176 4.176
4 C -0.068 4.068
5 C -0.128 4.128
6 C 0.156 3.844
7 C -0.181 4.181
8 C -0.138 4.138
9 N -0.661 5.661
10 C 0.033 3.967
11 C 0.506 3.494
12 O -0.518 6.518
13 N -0.598 5.598
14 C 0.245 3.755
15 C -0.528 4.528
16 H 0.057 0.943
17 C 0.063 3.937
18 N -0.893 5.893
19 Si 0.896 3.104
20 H -0.274 1.274
21 H -0.284 1.284
22 H -0.283 1.283
23 C 0.118 3.882
24 C -0.051 4.051
25 C 0.217 3.783
26 N -0.446 5.446
27 C 0.123 3.877
28 N -0.483 5.483
29 H 0.076 0.924
30 H 0.076 0.924
31 H 0.072 0.928
32 H 0.131 0.869
33 H 0.131 0.869
34 H 0.066 0.934
35 H 0.062 0.938
36 H 0.059 0.941
37 H 0.059 0.941
38 H 0.068 0.932
39 H 0.062 0.938
40 H 0.354 0.646
41 H 0.060 0.940
42 H 0.099 0.901
43 H 0.034 0.966
44 H 0.047 0.953
45 H 0.263 0.737
46 H 0.094 0.906
47 H 0.073 0.927
48 H 0.106 0.894
49 H 0.118 0.882
50 H 0.170 0.830
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -11.925 19.797 2.929 23.296
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.161 4.161
2 C -0.019 4.019
3 C -0.196 4.196
4 C -0.094 4.094
5 C -0.130 4.130
6 C 0.064 3.936
7 C -0.240 4.240
8 C -0.195 4.195
9 N -0.294 5.294
10 C -0.099 4.099
11 C 0.292 3.708
12 O -0.393 6.393
13 N -0.331 5.331
14 C 0.127 3.873
15 C -0.566 4.566
16 H 0.076 0.924
17 C -0.140 4.140
18 N -0.532 5.532
19 Si 0.724 3.276
20 H -0.199 1.199
21 H -0.210 1.210
22 H -0.209 1.209
23 C -0.009 4.009
24 C -0.093 4.093
25 C -0.101 4.101
26 N -0.123 5.123
27 C -0.034 4.034
28 N -0.192 5.192
29 H 0.094 0.906
30 H 0.095 0.905
31 H 0.090 0.910
32 H 0.149 0.851
33 H 0.149 0.851
34 H 0.085 0.915
35 H 0.082 0.918
36 H 0.078 0.922
37 H 0.078 0.922
38 H 0.087 0.913
39 H 0.081 0.919
40 H 0.175 0.825
41 H 0.078 0.922
42 H 0.117 0.883
43 H 0.052 0.948
44 H 0.065 0.935
45 H 0.073 0.927
46 H 0.112 0.888
47 H 0.091 0.909
48 H 0.124 0.876
49 H 0.136 0.864
50 H 0.187 0.813
Dipole moment (debyes) X Y Z Total
from point charges -11.685 19.450 3.645 22.981
hybrid contribution 0.725 0.376 -1.883 2.053
sum -10.960 19.825 1.762 22.722
Atomic orbital electron populations
1.20699 0.89128 1.03319 1.02933 1.21342 0.97026 0.88600 0.94974
1.21859 0.94687 0.99140 1.03948 1.21333 0.94217 0.97671 0.96189
1.20685 0.95761 0.94334 1.02219 1.19664 0.89822 0.88753 0.95330
1.22604 1.01918 1.01376 0.98130 1.21916 1.01109 0.99475 0.97014
1.60352 1.07568 1.10210 1.51318 1.22051 0.89500 0.95957 1.02431
1.20201 0.82921 0.90041 0.77633 1.90706 1.49383 1.50970 1.48224
1.48206 1.03936 1.08886 1.72078 1.19344 0.96360 0.74024 0.97619
1.21435 1.46824 0.96100 0.92286 0.92430 1.24915 0.95212 0.96540
0.97315 1.69927 1.46880 1.05719 1.30630 0.86476 0.77589 0.78878
0.84667 1.19859 1.21007 1.20863 1.21288 0.94491 0.92089 0.92985
1.19921 0.93834 0.93895 1.01635 1.29155 0.94015 0.93886 0.93072
1.81241 1.10846 1.11554 1.08683 1.22914 0.88548 0.99134 0.92817
1.67648 1.10080 1.29080 1.12426 0.90571 0.90460 0.90960 0.85120
0.85126 0.91504 0.91849 0.92205 0.92214 0.91324 0.91876 0.82502
0.92228 0.88325 0.94770 0.93481 0.92711 0.88773 0.90879 0.87556
0.86402 0.81276
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.10 -0.78 10.17 36.00 0.37 -0.41 16
2 C 0.12 1.25 6.78 -82.59 -0.56 0.69 16
3 C -0.18 -1.55 9.74 -39.44 -0.38 -1.93 16
4 C -0.07 -0.60 8.85 -39.28 -0.35 -0.95 16
5 C -0.13 -1.33 4.78 -104.48 -0.50 -1.83 16
6 C 0.16 1.49 0.80 -132.75 -0.11 1.38 16
7 C -0.18 -1.52 8.05 37.16 0.30 -1.22 16
8 C -0.14 -1.15 8.06 37.15 0.30 -0.85 16
9 N -0.66 -7.99 4.75 -102.40 -0.49 -8.48 16
10 C 0.03 0.39 3.93 -4.97 -0.02 0.37 16
11 C 0.51 8.85 7.71 -10.99 -0.08 8.77 16
12 O -0.52 -11.58 15.78 5.55 0.09 -11.49 16
13 N -0.60 -10.48 2.46 -175.06 -0.43 -10.91 16
14 C 0.25 5.69 5.16 -5.19 -0.03 5.66 16
15 C -0.53 -13.85 9.39 -34.44 -0.32 -14.18 16
16 H 0.06 1.52 7.81 -52.48 -0.41 1.11 16
17 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16
18 N -0.89 -25.33 13.29 55.43 0.74 -24.59 16
19 Si 0.90 21.08 29.54 -169.99 -5.02 16.06 16
20 H -0.27 -6.36 7.11 56.52 0.40 -5.95 16
21 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16
22 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16
23 C 0.12 1.48 5.17 -4.04 -0.02 1.46 16
24 C -0.05 -0.51 6.02 -29.52 -0.18 -0.68 16
25 C 0.22 2.49 15.44 -20.74 -0.32 2.17 16
26 N -0.45 -6.31 18.54 42.18 0.78 -5.53 16
27 C 0.12 1.55 10.31 -17.55 -0.18 1.37 16
28 N -0.48 -6.33 10.27 -9.47 -0.10 -6.43 16
29 H 0.08 0.51 8.14 -51.92 -0.42 0.08 16
30 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16
31 H 0.07 0.39 8.08 -51.93 -0.42 -0.03 16
32 H 0.13 0.79 8.06 -52.49 -0.42 0.37 16
33 H 0.13 0.84 7.26 -52.49 -0.38 0.46 16
34 H 0.07 0.53 6.40 -51.93 -0.33 0.20 16
35 H 0.06 0.45 7.46 -51.93 -0.39 0.06 16
36 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16
37 H 0.06 0.41 7.46 -51.93 -0.39 0.02 16
38 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16
39 H 0.06 0.48 6.40 -51.93 -0.33 0.14 16
40 H 0.35 4.71 7.26 -39.29 -0.29 4.42 16
41 H 0.06 0.64 5.56 -51.93 -0.29 0.35 16
42 H 0.10 0.96 5.35 -51.93 -0.28 0.69 16
43 H 0.03 0.79 8.07 -51.93 -0.42 0.37 16
44 H 0.05 1.26 7.42 -51.93 -0.39 0.88 16
45 H 0.26 7.09 8.31 -40.82 -0.34 6.76 16
46 H 0.09 1.28 8.07 -51.93 -0.42 0.87 16
47 H 0.07 0.74 6.44 -51.93 -0.33 0.41 16
48 H 0.11 0.84 7.22 -51.93 -0.38 0.47 16
49 H 0.12 1.18 8.14 -51.93 -0.42 0.75 16
50 H 0.17 2.26 6.41 -52.49 -0.34 1.93 16
LS Contribution 411.53 15.07 6.20 6.20
Total: -1.00 -33.48 411.53 -7.85 -41.33
By element:
Atomic # 1 Polarization: 9.86 SS G_CDS: -7.44 Total: 2.42 kcal
Atomic # 6 Polarization: 3.61 SS G_CDS: -2.18 Total: 1.43 kcal
Atomic # 7 Polarization: -56.45 SS G_CDS: 0.51 Total: -55.94 kcal
Atomic # 8 Polarization: -11.58 SS G_CDS: 0.09 Total: -11.49 kcal
Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal
Total LS contribution 6.20 Total: 6.20 kcal
Total: -33.48 -7.85 -41.33 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000353570900.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 71.359 kcal
(2) G-P(sol) polarization free energy of solvation -33.475 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.884 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.854 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.329 kcal
(6) G-S(sol) free energy of system = (1) + (5) 30.030 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.87 seconds