Wall clock time and date at job start Wed Apr 1 2020 03:17:54
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50693 * 1
3 3 C 1.38229 * 119.62265 * 2 1
4 4 C 1.38625 * 119.16334 * 179.97438 * 3 2 1
5 5 C 1.38675 * 118.41932 * 359.97438 * 4 3 2
6 6 C 1.50706 * 120.41449 * 180.02562 * 5 4 3
7 7 C 1.52997 * 109.47238 * 299.99983 * 6 5 4
8 8 C 1.52992 * 109.47161 * 60.00519 * 6 5 4
9 9 N 1.46902 * 109.46577 * 180.02562 * 6 5 4
10 10 C 1.46905 * 110.99800 * 180.02562 * 9 6 5
11 11 C 1.50698 * 109.47191 * 179.97438 * 10 9 6
12 12 O 1.21284 * 120.00086 * 0.02562 * 11 10 9
13 13 N 1.34774 * 119.99864 * 179.97438 * 11 10 9
14 14 C 1.46508 * 120.00070 * 180.02562 * 13 11 10
15 15 C 1.50695 * 109.47252 * 89.99953 * 14 13 11
16 16 H 1.08007 * 119.99723 * 0.02562 * 15 14 13
17 17 C 1.37876 * 120.00031 * 180.02562 * 15 14 13
18 18 N 1.31512 * 119.99958 * 359.97438 * 17 15 14
19 19 Si 1.86808 * 119.99839 * 180.02562 * 17 15 14
20 20 H 1.48498 * 109.46932 * 359.97438 * 19 17 15
21 21 H 1.48500 * 109.46720 * 119.99737 * 19 17 15
22 22 H 1.48491 * 109.47070 * 239.99660 * 19 17 15
23 23 C 1.46504 * 120.00172 * 0.02562 * 13 11 10
24 24 C 1.52996 * 109.47169 * 89.99936 * 23 13 11
25 25 C 1.47192 * 109.47456 * 180.02562 * 24 23 13
26 26 N 9.18173 * 151.84744 * 340.48746 * 4 1 2
27 27 C 1.38181 * 119.16694 * 0.27964 * 5 4 3
28 28 N 1.31860 * 119.61562 * 179.97438 * 2 1 3
29 29 H 1.09009 * 109.46992 * 90.00131 * 1 2 3
30 30 H 1.09000 * 109.47526 * 210.00169 * 1 2 3
31 31 H 1.09001 * 109.46947 * 330.00680 * 1 2 3
32 32 H 1.07997 * 120.41683 * 359.97438 * 3 2 1
33 33 H 1.07999 * 120.78872 * 179.97438 * 4 3 2
34 34 H 1.09002 * 109.47153 * 180.02562 * 7 6 5
35 35 H 1.09001 * 109.46832 * 60.00314 * 7 6 5
36 36 H 1.09004 * 109.47261 * 300.00295 * 7 6 5
37 37 H 1.09001 * 109.47066 * 299.99783 * 8 6 5
38 38 H 1.08996 * 109.47747 * 59.99449 * 8 6 5
39 39 H 1.09002 * 109.47103 * 179.97438 * 8 6 5
40 40 H 1.00896 * 111.00594 * 56.04567 * 9 6 5
41 41 H 1.08993 * 109.47004 * 300.00108 * 10 9 6
42 42 H 1.09002 * 109.47091 * 59.99861 * 10 9 6
43 43 H 1.08994 * 109.46812 * 210.00154 * 14 13 11
44 44 H 1.09000 * 109.46903 * 330.00119 * 14 13 11
45 45 H 0.97005 * 119.99741 * 180.02562 * 18 17 15
46 46 H 1.08995 * 109.47092 * 210.00169 * 23 13 11
47 47 H 1.08995 * 109.46905 * 329.99845 * 23 13 11
48 48 H 1.09004 * 109.47024 * 300.00193 * 24 23 13
49 49 H 1.09003 * 109.46991 * 59.99983 * 24 23 13
50 50 H 1.07994 * 119.62233 * 179.70207 * 27 5 4
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5069 0.0000 0.0000
3 6 2.1902 1.2016 0.0000
4 6 3.5764 1.1905 0.0005
5 6 4.2266 -0.0344 0.0016
6 6 5.7322 -0.0989 0.0028
7 6 6.2737 0.5992 -1.2463
8 6 6.2717 0.6003 1.2522
9 7 6.1620 -1.5037 0.0032
10 6 7.6275 -1.6058 0.0050
11 6 8.0299 -3.0581 0.0059
12 8 7.1796 -3.9229 0.0047
13 7 9.3346 -3.3958 0.0071
14 6 9.7258 -4.8077 0.0074
15 6 9.8612 -5.2918 -1.4132
16 1 9.6749 -4.6153 -2.2343
17 6 10.2228 -6.5983 -1.6648
18 7 10.4502 -7.4218 -0.6650
19 14 10.3913 -7.1982 -3.4259
20 1 10.0842 -6.0850 -4.3595
21 1 11.7802 -7.6701 -3.6572
22 1 9.4430 -8.3165 -3.6607
23 6 10.3617 -2.3511 0.0080
24 6 10.7180 -1.9875 1.4507
25 6 11.7495 -0.9374 1.4517
26 7 12.5472 -0.1276 1.4469
27 6 3.4766 -1.1949 -0.0038
28 7 2.1586 -1.1463 0.0005
29 1 -0.3633 0.0000 -1.0278
30 1 -0.3634 -0.8899 0.5138
31 1 -0.3633 0.8901 0.5137
32 1 1.6508 2.1373 -0.0004
33 1 4.1366 2.1138 0.0001
34 1 7.3627 0.5522 -1.2456
35 1 5.9547 1.6415 -1.2470
36 1 5.8893 0.1011 -2.1364
37 1 5.9527 1.6426 1.2515
38 1 5.8860 0.1029 2.1420
39 1 7.3607 0.5532 1.2532
40 1 5.7654 -2.0034 -0.7784
41 1 8.0267 -1.1184 -0.8844
42 1 8.0246 -1.1185 0.8955
43 1 10.6800 -4.9201 0.5221
44 1 8.9647 -5.3954 0.5206
45 1 10.7050 -8.3409 -0.8420
46 1 11.2515 -2.7160 -0.5051
47 1 9.9823 -1.4682 -0.5062
48 1 9.8282 -1.6226 1.9638
49 1 11.0974 -2.8705 1.9649
50 1 3.9753 -2.1528 -0.0079
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000353570900.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:17:54
Heat of formation + Delta-G solvation = 8.464650 kcal
Electronic energy + Delta-G solvation = -29931.709720 eV
Core-core repulsion = 25958.260135 eV
Total energy + Delta-G solvation = -3973.449585 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 344.195 amu
Computer time = 0.99 seconds
Orbital eigenvalues (eV)
-41.54296 -40.70259 -38.65084 -37.91009 -36.61316 -34.88221 -33.99827 -33.21926
-32.14271 -31.57860 -29.56666 -28.53448 -28.19181 -27.01922 -25.28155 -24.38940
-24.26394 -23.04204 -20.43393 -20.02735 -18.84266 -18.38526 -18.21223 -17.70747
-17.20838 -16.91599 -16.50602 -16.29497 -15.89302 -15.65292 -15.50967 -15.29154
-15.09990 -14.76189 -14.60792 -14.38346 -14.12993 -14.04366 -13.98353 -13.73201
-13.55903 -13.49932 -13.20425 -13.12376 -13.05969 -12.92723 -12.85849 -12.68870
-12.65826 -12.51754 -12.38440 -12.16623 -12.13626 -11.92322 -11.81705 -11.62652
-10.67558 -10.58331 -10.50120 -10.28341 -9.67372 -9.43190 -9.30148 -8.16903
-6.28917 0.21829 0.42294 1.38850 1.41864 1.51679 1.71167 1.86287
1.96272 2.25833 2.44526 2.86268 3.02294 3.14818 3.27269 3.41443
3.75235 3.83516 3.91871 4.03680 4.06379 4.14194 4.14903 4.21965
4.34395 4.37989 4.43538 4.56941 4.64148 4.71747 4.78355 4.81100
4.81623 4.86909 4.93868 4.96905 5.01139 5.08416 5.13689 5.19812
5.22981 5.29407 5.36043 5.38007 5.42769 5.63570 5.85184 5.90270
6.05960 6.15004 6.28973 6.63206 6.79095 6.86339 7.15691 7.36906
7.59188 8.89891
Molecular weight = 344.20amu
Principal moments of inertia in cm(-1)
A = 0.009699 B = 0.002860 C = 0.002344
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2886.095599 B = 9787.086324 C =11944.275869
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.101 4.101
2 C 0.097 3.903
3 C -0.170 4.170
4 C -0.065 4.065
5 C -0.129 4.129
6 C 0.160 3.840
7 C -0.178 4.178
8 C -0.137 4.137
9 N -0.678 5.678
10 C 0.048 3.952
11 C 0.499 3.501
12 O -0.578 6.578
13 N -0.599 5.599
14 C 0.260 3.740
15 C -0.536 4.536
16 H 0.053 0.947
17 C 0.010 3.990
18 N -0.927 5.927
19 Si 0.957 3.043
20 H -0.267 1.267
21 H -0.274 1.274
22 H -0.286 1.286
23 C 0.114 3.886
24 C -0.039 4.039
25 C 0.246 3.754
26 N -0.488 5.488
27 C 0.094 3.906
28 N -0.521 5.521
29 H 0.083 0.917
30 H 0.064 0.936
31 H 0.098 0.902
32 H 0.165 0.835
33 H 0.164 0.836
34 H 0.076 0.924
35 H 0.083 0.917
36 H 0.045 0.955
37 H 0.081 0.919
38 H 0.052 0.948
39 H 0.076 0.924
40 H 0.342 0.658
41 H 0.084 0.916
42 H 0.131 0.869
43 H 0.033 0.967
44 H 0.002 0.998
45 H 0.265 0.735
46 H 0.082 0.918
47 H 0.107 0.893
48 H 0.137 0.863
49 H 0.118 0.882
50 H 0.146 0.854
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -11.835 23.731 2.492 26.635
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.158 4.158
2 C -0.041 4.041
3 C -0.189 4.189
4 C -0.091 4.091
5 C -0.132 4.132
6 C 0.068 3.932
7 C -0.237 4.237
8 C -0.194 4.194
9 N -0.311 5.311
10 C -0.083 4.083
11 C 0.288 3.712
12 O -0.457 6.457
13 N -0.331 5.331
14 C 0.139 3.861
15 C -0.574 4.574
16 H 0.072 0.928
17 C -0.189 4.189
18 N -0.567 5.567
19 Si 0.783 3.217
20 H -0.192 1.192
21 H -0.199 1.199
22 H -0.213 1.213
23 C -0.011 4.011
24 C -0.080 4.080
25 C -0.071 4.071
26 N -0.166 5.166
27 C -0.062 4.062
28 N -0.231 5.231
29 H 0.102 0.898
30 H 0.083 0.917
31 H 0.117 0.883
32 H 0.183 0.817
33 H 0.181 0.819
34 H 0.095 0.905
35 H 0.102 0.898
36 H 0.064 0.936
37 H 0.100 0.900
38 H 0.071 0.929
39 H 0.095 0.905
40 H 0.161 0.839
41 H 0.101 0.899
42 H 0.148 0.852
43 H 0.051 0.949
44 H 0.020 0.980
45 H 0.074 0.926
46 H 0.101 0.899
47 H 0.125 0.875
48 H 0.155 0.845
49 H 0.136 0.864
50 H 0.163 0.837
Dipole moment (debyes) X Y Z Total
from point charges -11.561 23.441 3.213 26.333
hybrid contribution 0.617 -0.840 -1.725 2.015
sum -10.945 22.601 1.488 25.155
Atomic orbital electron populations
1.20769 0.87404 1.04036 1.03630 1.21892 0.98412 0.88702 0.95045
1.22250 0.94965 0.99689 1.01997 1.21704 0.94528 0.97988 0.94906
1.20794 0.96252 0.94280 1.01842 1.19759 0.89297 0.87311 0.96817
1.22578 1.02345 1.02166 0.96601 1.21946 1.01867 1.00300 0.95321
1.60352 1.07429 1.12130 1.51145 1.22013 0.89867 0.91565 1.04871
1.21221 0.82012 0.92112 0.75846 1.90683 1.50973 1.53248 1.50772
1.48073 1.05392 1.07705 1.71887 1.18773 0.94645 0.77143 0.95552
1.21772 1.45875 0.96238 0.93553 0.92824 1.25727 0.95199 0.96953
1.01050 1.70034 1.48065 1.06026 1.32556 0.85524 0.77768 0.78192
0.80261 1.19151 1.19914 1.21271 1.21520 0.92892 0.91591 0.95103
1.19842 0.94585 0.93610 0.99982 1.29144 0.93179 0.93036 0.91736
1.81288 1.12165 1.13168 1.10015 1.22707 0.88936 0.99346 0.95207
1.67561 1.10576 1.31109 1.13834 0.89805 0.91680 0.88293 0.81722
0.81871 0.90546 0.89785 0.93606 0.90007 0.92917 0.90492 0.83854
0.89874 0.85161 0.94866 0.98019 0.92648 0.89906 0.87459 0.84540
0.86371 0.83693
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.10 -1.41 10.17 71.23 0.72 -0.69 16
2 C 0.10 1.97 6.78 42.55 0.29 2.26 16
3 C -0.17 -2.50 9.74 22.36 0.22 -2.28 16
4 C -0.07 -0.95 8.85 22.47 0.20 -0.75 16
5 C -0.13 -2.55 4.78 -19.77 -0.09 -2.65 16
6 C 0.16 2.69 0.80 2.78 0.00 2.70 16
7 C -0.18 -2.40 8.05 71.98 0.58 -1.82 16
8 C -0.14 -1.79 8.06 71.98 0.58 -1.21 16
9 N -0.68 -16.07 4.75 -477.87 -2.27 -18.34 16
10 C 0.05 1.05 3.93 85.56 0.34 1.39 16
11 C 0.50 17.49 7.71 87.66 0.68 18.17 16
12 O -0.58 -27.17 15.78 -3.04 -0.05 -27.22 16
13 N -0.60 -20.83 2.46 -826.17 -2.03 -22.86 16
14 C 0.26 12.48 5.16 85.63 0.44 12.92 16
15 C -0.54 -28.74 9.39 25.60 0.24 -28.50 16
16 H 0.05 2.85 7.81 -2.91 -0.02 2.83 16
17 C 0.01 0.53 5.46 84.65 0.46 1.00 16
18 N -0.93 -54.02 13.29 21.45 0.28 -53.74 16
19 Si 0.96 43.75 29.54 68.60 2.03 45.78 16
20 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16
21 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16
22 H -0.29 -13.20 7.11 99.48 0.71 -12.50 16
23 C 0.11 2.60 5.17 86.38 0.45 3.05 16
24 C -0.04 -0.66 6.02 28.78 0.17 -0.49 16
25 C 0.25 4.99 15.44 89.43 1.38 6.37 16
26 N -0.49 -12.80 18.54 20.01 0.37 -12.42 16
27 C 0.09 2.50 10.31 84.67 0.87 3.37 16
28 N -0.52 -14.25 10.27 -183.89 -1.89 -16.14 16
29 H 0.08 1.02 8.14 -2.38 -0.02 1.00 16
30 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16
31 H 0.10 0.81 8.08 -2.39 -0.02 0.79 16
32 H 0.17 1.24 8.06 -2.91 -0.02 1.22 16
33 H 0.16 1.27 7.26 -2.91 -0.02 1.25 16
34 H 0.08 0.89 6.40 -2.39 -0.02 0.87 16
35 H 0.08 0.80 7.46 -2.39 -0.02 0.78 16
36 H 0.04 0.75 8.14 -2.38 -0.02 0.74 16
37 H 0.08 0.72 7.46 -2.39 -0.02 0.71 16
38 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16
39 H 0.08 0.79 6.40 -2.39 -0.02 0.77 16
40 H 0.34 9.53 7.26 -89.70 -0.65 8.88 16
41 H 0.08 1.47 5.56 -2.39 -0.01 1.46 16
42 H 0.13 2.02 5.35 -2.39 -0.01 2.00 16
43 H 0.03 1.58 8.07 -2.39 -0.02 1.56 16
44 H 0.00 0.10 7.42 -2.39 -0.02 0.08 16
45 H 0.26 14.60 8.31 -92.70 -0.77 13.83 16
46 H 0.08 2.13 8.07 -2.39 -0.02 2.11 16
47 H 0.11 1.76 6.44 -2.39 -0.02 1.74 16
48 H 0.14 1.58 7.22 -2.39 -0.02 1.57 16
49 H 0.12 2.13 8.14 -2.39 -0.02 2.11 16
50 H 0.15 4.37 6.41 -2.91 -0.02 4.35 16
Total: -1.00 -78.72 411.53 4.29 -74.43
By element:
Atomic # 1 Polarization: 17.34 SS G_CDS: 0.32 Total: 17.65 kcal
Atomic # 6 Polarization: 5.33 SS G_CDS: 7.53 Total: 12.86 kcal
Atomic # 7 Polarization: -117.96 SS G_CDS: -5.53 Total: -123.49 kcal
Atomic # 8 Polarization: -27.17 SS G_CDS: -0.05 Total: -27.22 kcal
Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.78 kcal
Total: -78.72 4.29 -74.43 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000353570900.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 82.890 kcal
(2) G-P(sol) polarization free energy of solvation -78.715 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.175 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.290 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.425 kcal
(6) G-S(sol) free energy of system = (1) + (5) 8.465 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.99 seconds