Wall clock time and date at job start Wed Apr 1 2020 03:14:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38171 * 119.97554 * 2 1 4 4 C 1.38712 * 119.94690 * 180.27137 * 3 2 1 5 5 O 1.35896 * 120.05403 * 179.71798 * 4 3 2 6 6 C 1.42907 * 116.99718 * 179.72626 * 5 4 3 7 7 C 1.52996 * 109.46835 * 180.02562 * 6 5 4 8 8 N 1.46508 * 109.46797 * 179.97438 * 7 6 5 9 9 C 1.35319 * 125.86369 * 125.32390 * 8 7 6 10 10 C 1.35349 * 106.17187 * 180.11914 * 9 8 7 11 11 C 1.50696 * 126.75182 * 179.85823 * 10 9 8 12 12 N 1.46495 * 109.47418 * 94.71165 * 11 10 9 13 13 C 1.36936 * 119.99910 * 179.72280 * 12 11 10 14 14 H 1.08004 * 120.00423 * 0.28142 * 13 12 11 15 15 C 1.38812 * 120.00194 * 180.27114 * 13 12 11 16 16 N 1.31622 * 119.99825 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 120.00318 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.47113 * 359.97438 * 17 15 13 19 19 H 1.48498 * 109.47054 * 120.00461 * 17 15 13 20 20 H 1.48505 * 109.47139 * 240.00117 * 17 15 13 21 21 N 1.33771 * 106.49832 * 359.59282 * 10 9 8 22 22 N 1.28637 * 108.88394 * 0.26065 * 21 10 9 23 23 C 1.38754 * 119.88408 * 359.44641 * 4 3 2 24 24 C 1.38119 * 119.94921 * 0.27603 * 23 4 3 25 25 C 1.38246 * 119.97236 * 179.69120 * 2 1 3 26 26 C 1.50695 * 119.94334 * 0.02562 * 25 2 1 27 27 C 1.53004 * 109.46948 * 114.20530 * 26 25 2 28 28 C 1.52996 * 109.47075 * 234.20509 * 26 25 2 29 29 H 1.08997 * 109.47652 * 264.71100 * 1 2 3 30 30 H 1.09007 * 109.46793 * 24.71378 * 1 2 3 31 31 H 1.09004 * 109.46817 * 144.70923 * 1 2 3 32 32 H 1.08001 * 120.02692 * 359.97438 * 3 2 1 33 33 H 1.08998 * 109.46794 * 59.99860 * 6 5 4 34 34 H 1.08997 * 109.47106 * 300.00129 * 6 5 4 35 35 H 1.08997 * 109.47395 * 60.00795 * 7 6 5 36 36 H 1.08997 * 109.47320 * 299.99926 * 7 6 5 37 37 H 1.07999 * 126.91454 * 359.97438 * 9 8 7 38 38 H 1.08999 * 109.47245 * 334.70539 * 11 10 9 39 39 H 1.09004 * 109.46826 * 214.71418 * 11 10 9 40 40 H 0.96993 * 120.00218 * 0.02562 * 12 11 10 41 41 H 0.96999 * 120.00156 * 179.97438 * 16 15 13 42 42 H 1.07997 * 120.02165 * 180.29674 * 23 4 3 43 43 H 1.07996 * 119.97724 * 180.02562 * 24 23 4 44 44 H 1.09000 * 109.47296 * 354.20514 * 26 25 2 45 45 H 1.09002 * 109.47330 * 60.00644 * 27 26 25 46 46 H 1.09003 * 109.46952 * 179.97438 * 27 26 25 47 47 H 1.08993 * 109.47535 * 299.99511 * 27 26 25 48 48 H 1.08999 * 109.47082 * 60.00149 * 28 26 25 49 49 H 1.09003 * 109.47332 * 180.02562 * 28 26 25 50 50 H 1.08996 * 109.47176 * 299.99679 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1973 1.1969 0.0000 4 6 3.5844 1.1962 -0.0057 5 8 4.2656 2.3721 -0.0115 6 6 5.6926 2.2952 -0.0111 7 6 6.2794 3.7082 -0.0174 8 7 7.7423 3.6293 -0.0164 9 6 8.5685 4.2156 -0.9135 10 6 9.8265 3.8833 -0.5408 11 6 11.1065 4.2901 -1.2241 12 7 11.6446 5.4902 -0.5787 13 6 12.8135 6.0438 -1.0286 14 1 13.3364 5.5984 -1.8621 15 6 13.3263 7.1776 -0.4135 16 7 12.6893 7.7203 0.6024 17 14 14.9204 7.9333 -1.0276 18 1 15.4358 7.1396 -2.1720 19 1 14.6696 9.3298 -1.4658 20 1 15.9235 7.9308 0.0675 21 7 9.7104 3.1275 0.5568 22 7 8.4629 2.9957 0.8416 23 6 4.2752 -0.0072 0.0002 24 6 3.5806 -1.2009 0.0060 25 6 2.1976 -1.1976 0.0065 26 6 1.4422 -2.5015 0.0129 27 6 1.6989 -3.2460 -1.2989 28 6 1.9162 -3.3596 1.1875 29 1 -0.3634 -0.0947 1.0232 30 1 -0.3633 0.9336 -0.4297 31 1 -0.3633 -0.8389 -0.5937 32 1 1.6574 2.1322 -0.0004 33 1 6.0277 1.7582 -0.8984 34 1 6.0277 1.7670 0.8815 35 1 5.9443 4.2448 0.8702 36 1 5.9443 4.2368 -0.9098 37 1 8.2817 4.8242 -1.7583 38 1 10.9065 4.5011 -2.2746 39 1 11.8322 3.4803 -1.1481 40 1 11.1752 5.8900 0.1700 41 1 13.0478 8.5124 1.0325 42 1 5.3552 -0.0103 0.0007 43 1 4.1178 -2.1378 0.0111 44 1 0.3754 -2.3029 0.1152 45 1 2.7657 -3.4448 -1.4012 46 1 1.1529 -4.1894 -1.2940 47 1 1.3612 -2.6348 -2.1357 48 1 1.7333 -2.8292 2.1220 49 1 1.3701 -4.3030 1.1920 50 1 2.9830 -3.5583 1.0852 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603174003.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:14:35 Heat of formation + Delta-G solvation = 87.739502 kcal Electronic energy + Delta-G solvation = -28185.619720 eV Core-core repulsion = 24215.607751 eV Total energy + Delta-G solvation = -3970.011969 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -43.03593 -40.77251 -38.88742 -35.72615 -35.11019 -34.33665 -33.02000 -31.86743 -30.77316 -29.88863 -28.98458 -27.57633 -27.34553 -25.81504 -24.76981 -23.78660 -22.83497 -21.81545 -21.43927 -20.45171 -20.29450 -18.39792 -17.32477 -17.11546 -16.77506 -16.58855 -15.97308 -15.80309 -14.87409 -14.77225 -14.63883 -14.51898 -14.48143 -14.02414 -13.84797 -13.58371 -13.50462 -13.35204 -13.20511 -13.05017 -12.70349 -12.67582 -12.59761 -12.34481 -12.19442 -11.92969 -11.63494 -11.59905 -11.28268 -11.11821 -11.03793 -10.89531 -10.85605 -10.82444 -10.48442 -10.06931 -9.93952 -9.73882 -9.16460 -8.91068 -8.87011 -8.42369 -6.91541 -5.73605 -3.03428 0.94473 1.04495 1.71525 2.01593 2.86081 3.05277 3.32396 3.46025 3.51498 3.53988 4.08186 4.22525 4.25042 4.35337 4.47868 4.59842 4.62951 4.67235 4.70301 4.75066 4.76642 4.87490 4.97561 5.01907 5.04826 5.16719 5.17949 5.21342 5.27728 5.30893 5.40412 5.42887 5.44366 5.47350 5.55901 5.62332 5.72383 5.78977 5.80291 5.80605 5.94580 6.04661 6.17102 6.30159 6.36888 6.37954 6.63550 6.68327 6.76342 6.97373 7.72083 8.43489 8.77015 9.55428 10.10898 10.46755 11.49189 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.031122 B = 0.001469 C = 0.001436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.462933 B =19055.064706 C =19487.883757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.047 4.047 3 C -0.149 4.149 4 C 0.132 3.868 5 O -0.312 6.312 6 C 0.051 3.949 7 C 0.124 3.876 8 N -0.301 5.301 9 C -0.038 4.038 10 C -0.004 4.004 11 C 0.232 3.768 12 N -0.726 5.726 13 C -0.240 4.240 14 H 0.074 0.926 15 C -0.013 4.013 16 N -0.932 5.932 17 Si 0.909 3.091 18 H -0.279 1.279 19 H -0.292 1.292 20 H -0.291 1.291 21 N -0.249 5.249 22 N -0.098 5.098 23 C -0.208 4.208 24 C -0.070 4.070 25 C -0.114 4.114 26 C -0.057 4.057 27 C -0.144 4.144 28 C -0.145 4.145 29 H 0.073 0.927 30 H 0.068 0.932 31 H 0.072 0.928 32 H 0.131 0.869 33 H 0.071 0.929 34 H 0.083 0.917 35 H 0.109 0.891 36 H 0.116 0.884 37 H 0.192 0.808 38 H 0.039 0.961 39 H 0.040 0.960 40 H 0.385 0.615 41 H 0.255 0.745 42 H 0.128 0.872 43 H 0.124 0.876 44 H 0.082 0.918 45 H 0.056 0.944 46 H 0.057 0.943 47 H 0.055 0.945 48 H 0.056 0.944 49 H 0.057 0.943 50 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.275 -20.052 -3.610 36.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.047 4.047 3 C -0.167 4.167 4 C 0.087 3.913 5 O -0.225 6.225 6 C -0.026 4.026 7 C 0.002 3.998 8 N -0.096 5.096 9 C -0.188 4.188 10 C -0.142 4.142 11 C 0.103 3.897 12 N -0.371 5.371 13 C -0.371 4.371 14 H 0.092 0.908 15 C -0.209 4.209 16 N -0.580 5.580 17 Si 0.740 3.260 18 H -0.205 1.205 19 H -0.219 1.219 20 H -0.219 1.219 21 N -0.117 5.117 22 N -0.077 5.077 23 C -0.226 4.226 24 C -0.088 4.088 25 C -0.114 4.114 26 C -0.076 4.076 27 C -0.202 4.202 28 C -0.202 4.202 29 H 0.092 0.908 30 H 0.087 0.913 31 H 0.091 0.909 32 H 0.149 0.851 33 H 0.090 0.910 34 H 0.101 0.899 35 H 0.128 0.872 36 H 0.134 0.866 37 H 0.209 0.791 38 H 0.056 0.944 39 H 0.057 0.943 40 H 0.219 0.781 41 H 0.064 0.936 42 H 0.146 0.854 43 H 0.142 0.858 44 H 0.100 0.900 45 H 0.075 0.925 46 H 0.076 0.924 47 H 0.074 0.926 48 H 0.075 0.925 49 H 0.076 0.924 50 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -30.233 -20.711 -2.450 36.728 hybrid contribution 0.869 1.290 -0.914 1.805 sum -29.363 -19.420 -3.364 35.365 Atomic orbital electron populations 1.20857 0.90837 1.03017 1.02629 1.19528 0.95915 0.91617 0.97626 1.20254 0.90655 0.98597 1.07210 1.18879 0.91559 0.84180 0.96720 1.85918 1.18911 1.28731 1.88953 1.22867 0.78869 0.97182 1.03638 1.21584 0.73897 0.97377 1.06955 1.47006 1.07797 1.35171 1.19633 1.23462 0.90351 1.05217 0.99752 1.22509 0.96285 0.99774 0.95627 1.18960 0.86561 0.90705 0.93450 1.42317 1.27110 1.28300 1.39369 1.19282 0.98830 1.06846 1.12145 0.90797 1.24765 0.99206 0.98634 0.98315 1.69694 1.40150 1.23571 1.24588 0.86083 0.83198 0.78852 0.77834 1.20451 1.21912 1.21855 1.75110 1.07480 1.15982 1.13087 1.78255 0.97905 1.16958 1.14541 1.21279 1.00434 0.92197 1.08736 1.20756 0.93485 0.97384 0.97198 1.19614 0.93482 0.94289 1.04019 1.20144 0.99661 0.91931 0.95829 1.21859 1.01984 0.99775 0.96546 1.21871 1.01477 0.99220 0.97676 0.90832 0.91321 0.90923 0.85131 0.91038 0.89914 0.87245 0.86560 0.79147 0.94377 0.94266 0.78098 0.93558 0.85389 0.85773 0.89992 0.92513 0.92422 0.92584 0.92518 0.92427 0.92478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.59 9.14 36.00 0.33 -0.26 16 2 C -0.05 -0.35 5.88 -104.64 -0.62 -0.97 16 3 C -0.15 -1.29 9.62 -39.43 -0.38 -1.67 16 4 C 0.13 1.27 6.69 -39.22 -0.26 1.01 16 5 O -0.31 -3.01 10.14 -19.41 -0.20 -3.21 16 6 C 0.05 0.46 4.87 37.16 0.18 0.64 16 7 C 0.12 1.13 6.82 -4.04 -0.03 1.11 16 8 N -0.30 -4.13 3.44 -61.26 -0.21 -4.34 16 9 C -0.04 -0.56 11.50 -17.04 -0.20 -0.75 16 10 C 0.00 -0.08 6.61 -82.78 -0.55 -0.63 16 11 C 0.23 4.87 6.82 -5.20 -0.04 4.83 16 12 N -0.73 -19.05 5.59 -61.09 -0.34 -19.39 16 13 C -0.24 -6.80 9.99 -15.06 -0.15 -6.95 16 14 H 0.07 1.99 7.83 -52.48 -0.41 1.58 16 15 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 16 N -0.93 -28.83 13.06 55.49 0.72 -28.10 16 17 Si 0.91 22.58 29.55 -169.99 -5.02 17.55 16 18 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 19 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 20 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 21 N -0.25 -5.04 12.41 33.29 0.41 -4.63 16 22 N -0.10 -1.69 12.91 60.35 0.78 -0.91 16 23 C -0.21 -1.90 9.04 -39.43 -0.36 -2.26 16 24 C -0.07 -0.57 8.75 -39.60 -0.35 -0.92 16 25 C -0.11 -0.86 4.79 -104.60 -0.50 -1.36 16 26 C -0.06 -0.32 2.82 -91.77 -0.26 -0.58 16 27 C -0.14 -0.75 9.06 37.16 0.34 -0.41 16 28 C -0.15 -0.77 8.94 37.16 0.33 -0.44 16 29 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.07 0.30 8.05 -51.93 -0.42 -0.12 16 31 H 0.07 0.30 6.53 -51.93 -0.34 -0.04 16 32 H 0.13 0.97 8.06 -52.49 -0.42 0.55 16 33 H 0.07 0.62 7.66 -51.93 -0.40 0.23 16 34 H 0.08 0.81 7.64 -51.93 -0.40 0.42 16 35 H 0.11 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.12 0.76 8.07 -51.93 -0.42 0.34 16 37 H 0.19 2.13 8.06 -52.49 -0.42 1.71 16 38 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.39 10.92 7.66 -40.82 -0.31 10.61 16 41 H 0.25 7.58 8.31 -40.82 -0.34 7.24 16 42 H 0.13 1.10 6.30 -52.49 -0.33 0.77 16 43 H 0.12 0.84 7.10 -52.49 -0.37 0.47 16 44 H 0.08 0.40 5.71 -51.93 -0.30 0.10 16 45 H 0.06 0.31 7.75 -51.93 -0.40 -0.09 16 46 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 47 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 48 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 49 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 50 H 0.06 0.31 7.08 -51.93 -0.37 -0.06 16 LS Contribution 412.19 15.07 6.21 6.21 Total: -1.00 -34.58 412.19 -8.06 -42.65 By element: Atomic # 1 Polarization: 12.08 SS G_CDS: -7.83 Total: 4.26 kcal Atomic # 6 Polarization: -7.48 SS G_CDS: -2.59 Total: -10.08 kcal Atomic # 7 Polarization: -58.75 SS G_CDS: 1.36 Total: -57.38 kcal Atomic # 8 Polarization: -3.01 SS G_CDS: -0.20 Total: -3.21 kcal Atomic # 14 Polarization: 22.58 SS G_CDS: -5.02 Total: 17.55 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -34.58 -8.06 -42.65 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603174003.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.386 kcal (2) G-P(sol) polarization free energy of solvation -34.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.647 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds