Wall clock time and date at job start Wed Apr 1 2020 03:14:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38171 * 119.97554 * 2 1 4 4 C 1.38712 * 119.94690 * 180.27137 * 3 2 1 5 5 O 1.35896 * 120.05403 * 179.71798 * 4 3 2 6 6 C 1.42907 * 116.99718 * 179.72626 * 5 4 3 7 7 C 1.52996 * 109.46835 * 180.02562 * 6 5 4 8 8 N 1.46508 * 109.46797 * 179.97438 * 7 6 5 9 9 C 1.35319 * 125.86369 * 125.32390 * 8 7 6 10 10 C 1.35349 * 106.17187 * 180.11914 * 9 8 7 11 11 C 1.50696 * 126.75182 * 179.85823 * 10 9 8 12 12 N 1.46495 * 109.47418 * 94.71165 * 11 10 9 13 13 C 1.36936 * 119.99910 * 179.72280 * 12 11 10 14 14 H 1.08004 * 120.00423 * 0.28142 * 13 12 11 15 15 C 1.38812 * 120.00194 * 180.27114 * 13 12 11 16 16 N 1.31622 * 119.99825 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 120.00318 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.47113 * 359.97438 * 17 15 13 19 19 H 1.48498 * 109.47054 * 120.00461 * 17 15 13 20 20 H 1.48505 * 109.47139 * 240.00117 * 17 15 13 21 21 N 1.33771 * 106.49832 * 359.59282 * 10 9 8 22 22 N 1.28637 * 108.88394 * 0.26065 * 21 10 9 23 23 C 1.38754 * 119.88408 * 359.44641 * 4 3 2 24 24 C 1.38119 * 119.94921 * 0.27603 * 23 4 3 25 25 C 1.38246 * 119.97236 * 179.69120 * 2 1 3 26 26 C 1.50695 * 119.94334 * 0.02562 * 25 2 1 27 27 C 1.53004 * 109.46948 * 114.20530 * 26 25 2 28 28 C 1.52996 * 109.47075 * 234.20509 * 26 25 2 29 29 H 1.08997 * 109.47652 * 264.71100 * 1 2 3 30 30 H 1.09007 * 109.46793 * 24.71378 * 1 2 3 31 31 H 1.09004 * 109.46817 * 144.70923 * 1 2 3 32 32 H 1.08001 * 120.02692 * 359.97438 * 3 2 1 33 33 H 1.08998 * 109.46794 * 59.99860 * 6 5 4 34 34 H 1.08997 * 109.47106 * 300.00129 * 6 5 4 35 35 H 1.08997 * 109.47395 * 60.00795 * 7 6 5 36 36 H 1.08997 * 109.47320 * 299.99926 * 7 6 5 37 37 H 1.07999 * 126.91454 * 359.97438 * 9 8 7 38 38 H 1.08999 * 109.47245 * 334.70539 * 11 10 9 39 39 H 1.09004 * 109.46826 * 214.71418 * 11 10 9 40 40 H 0.96993 * 120.00218 * 0.02562 * 12 11 10 41 41 H 0.96999 * 120.00156 * 179.97438 * 16 15 13 42 42 H 1.07997 * 120.02165 * 180.29674 * 23 4 3 43 43 H 1.07996 * 119.97724 * 180.02562 * 24 23 4 44 44 H 1.09000 * 109.47296 * 354.20514 * 26 25 2 45 45 H 1.09002 * 109.47330 * 60.00644 * 27 26 25 46 46 H 1.09003 * 109.46952 * 179.97438 * 27 26 25 47 47 H 1.08993 * 109.47535 * 299.99511 * 27 26 25 48 48 H 1.08999 * 109.47082 * 60.00149 * 28 26 25 49 49 H 1.09003 * 109.47332 * 180.02562 * 28 26 25 50 50 H 1.08996 * 109.47176 * 299.99679 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1973 1.1969 0.0000 4 6 3.5844 1.1962 -0.0057 5 8 4.2656 2.3721 -0.0115 6 6 5.6926 2.2952 -0.0111 7 6 6.2794 3.7082 -0.0174 8 7 7.7423 3.6293 -0.0164 9 6 8.5685 4.2156 -0.9135 10 6 9.8265 3.8833 -0.5408 11 6 11.1065 4.2901 -1.2241 12 7 11.6446 5.4902 -0.5787 13 6 12.8135 6.0438 -1.0286 14 1 13.3364 5.5984 -1.8621 15 6 13.3263 7.1776 -0.4135 16 7 12.6893 7.7203 0.6024 17 14 14.9204 7.9333 -1.0276 18 1 15.4358 7.1396 -2.1720 19 1 14.6696 9.3298 -1.4658 20 1 15.9235 7.9308 0.0675 21 7 9.7104 3.1275 0.5568 22 7 8.4629 2.9957 0.8416 23 6 4.2752 -0.0072 0.0002 24 6 3.5806 -1.2009 0.0060 25 6 2.1976 -1.1976 0.0065 26 6 1.4422 -2.5015 0.0129 27 6 1.6989 -3.2460 -1.2989 28 6 1.9162 -3.3596 1.1875 29 1 -0.3634 -0.0947 1.0232 30 1 -0.3633 0.9336 -0.4297 31 1 -0.3633 -0.8389 -0.5937 32 1 1.6574 2.1322 -0.0004 33 1 6.0277 1.7582 -0.8984 34 1 6.0277 1.7670 0.8815 35 1 5.9443 4.2448 0.8702 36 1 5.9443 4.2368 -0.9098 37 1 8.2817 4.8242 -1.7583 38 1 10.9065 4.5011 -2.2746 39 1 11.8322 3.4803 -1.1481 40 1 11.1752 5.8900 0.1700 41 1 13.0478 8.5124 1.0325 42 1 5.3552 -0.0103 0.0007 43 1 4.1178 -2.1378 0.0111 44 1 0.3754 -2.3029 0.1152 45 1 2.7657 -3.4448 -1.4012 46 1 1.1529 -4.1894 -1.2940 47 1 1.3612 -2.6348 -2.1357 48 1 1.7333 -2.8292 2.1220 49 1 1.3701 -4.3030 1.1920 50 1 2.9830 -3.5583 1.0852 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000603174003.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:14:34 Heat of formation + Delta-G solvation = 66.823047 kcal Electronic energy + Delta-G solvation = -28186.526726 eV Core-core repulsion = 24215.607751 eV Total energy + Delta-G solvation = -3970.918975 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -44.30148 -41.40949 -39.51973 -37.03419 -36.14781 -35.50104 -33.68566 -33.56780 -31.78939 -31.41820 -29.72749 -27.99088 -27.85599 -27.60202 -25.65891 -24.76983 -24.35932 -22.87410 -22.35442 -21.61121 -20.85017 -19.38211 -19.07552 -17.94258 -17.81213 -17.37379 -16.98381 -16.57260 -16.39956 -15.89940 -15.62983 -15.39639 -15.28758 -15.07687 -14.99300 -14.51930 -14.43590 -14.23893 -14.14124 -13.76527 -13.72579 -13.61549 -13.16482 -13.11340 -12.98984 -12.94270 -12.81376 -12.75836 -12.52740 -12.14792 -12.12272 -12.02958 -11.88612 -11.81387 -11.64676 -11.61934 -11.33923 -11.12281 -10.97009 -10.25394 -9.77576 -9.06255 -9.01760 -7.93222 -5.23658 0.32039 0.40578 0.53640 1.06710 1.43030 1.51068 1.52336 1.62453 2.25191 2.59905 2.69966 3.25572 3.39344 3.48525 3.57461 3.74653 3.79012 3.88268 3.93340 4.01938 4.08467 4.19225 4.20275 4.24138 4.26144 4.30033 4.34017 4.44626 4.53384 4.57899 4.61790 4.78082 4.81532 4.84411 4.86980 4.95264 5.00812 5.02728 5.10344 5.11924 5.16497 5.24566 5.30639 5.37811 5.39875 5.46008 5.51948 5.58087 5.74263 5.79857 6.26614 6.29256 7.33489 7.45666 8.04767 8.30398 9.30934 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.031122 B = 0.001469 C = 0.001436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.462933 B =19055.064706 C =19487.883757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.051 4.051 3 C -0.159 4.159 4 C 0.112 3.888 5 O -0.315 6.315 6 C 0.058 3.942 7 C 0.118 3.882 8 N -0.286 5.286 9 C -0.011 4.011 10 C -0.038 4.038 11 C 0.235 3.765 12 N -0.740 5.740 13 C -0.243 4.243 14 H 0.086 0.914 15 C -0.078 4.078 16 N -0.973 5.973 17 Si 0.979 3.021 18 H -0.261 1.261 19 H -0.291 1.291 20 H -0.298 1.298 21 N -0.294 5.294 22 N -0.113 5.113 23 C -0.222 4.222 24 C -0.079 4.079 25 C -0.117 4.117 26 C -0.056 4.056 27 C -0.143 4.143 28 C -0.145 4.145 29 H 0.082 0.918 30 H 0.076 0.924 31 H 0.083 0.917 32 H 0.140 0.860 33 H 0.074 0.926 34 H 0.069 0.931 35 H 0.119 0.881 36 H 0.153 0.847 37 H 0.233 0.767 38 H 0.066 0.934 39 H 0.029 0.971 40 H 0.371 0.629 41 H 0.250 0.750 42 H 0.126 0.874 43 H 0.133 0.867 44 H 0.093 0.907 45 H 0.050 0.950 46 H 0.069 0.931 47 H 0.052 0.948 48 H 0.050 0.950 49 H 0.069 0.931 50 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.166 -20.503 -5.264 38.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.051 4.051 3 C -0.178 4.178 4 C 0.067 3.933 5 O -0.229 6.229 6 C -0.018 4.018 7 C -0.002 4.002 8 N -0.081 5.081 9 C -0.162 4.162 10 C -0.177 4.177 11 C 0.107 3.893 12 N -0.382 5.382 13 C -0.374 4.374 14 H 0.103 0.897 15 C -0.270 4.270 16 N -0.624 5.624 17 Si 0.808 3.192 18 H -0.185 1.185 19 H -0.219 1.219 20 H -0.225 1.225 21 N -0.161 5.161 22 N -0.092 5.092 23 C -0.240 4.240 24 C -0.097 4.097 25 C -0.117 4.117 26 C -0.074 4.074 27 C -0.200 4.200 28 C -0.202 4.202 29 H 0.100 0.900 30 H 0.094 0.906 31 H 0.102 0.898 32 H 0.157 0.843 33 H 0.093 0.907 34 H 0.087 0.913 35 H 0.137 0.863 36 H 0.171 0.829 37 H 0.250 0.750 38 H 0.083 0.917 39 H 0.047 0.953 40 H 0.202 0.798 41 H 0.059 0.941 42 H 0.144 0.856 43 H 0.151 0.849 44 H 0.112 0.888 45 H 0.069 0.931 46 H 0.088 0.912 47 H 0.071 0.929 48 H 0.069 0.931 49 H 0.088 0.912 50 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -32.153 -21.219 -4.126 38.744 hybrid contribution 1.290 1.318 -0.416 1.891 sum -30.864 -19.901 -4.542 37.003 Atomic orbital electron populations 1.20918 0.88903 1.03962 1.03453 1.19880 0.97388 0.91224 0.96652 1.20496 0.90419 0.99528 1.07315 1.19094 0.92115 0.84221 0.97843 1.85885 1.18848 1.28932 1.89212 1.22720 0.78899 0.97019 1.03190 1.21991 0.71028 0.97872 1.09298 1.47298 1.09318 1.33279 1.18158 1.23933 0.88936 1.03525 0.99797 1.22333 0.97042 1.01795 0.96498 1.18989 0.87413 0.88370 0.94500 1.42529 1.26769 1.29732 1.39213 1.19755 0.99324 1.06529 1.11828 0.89650 1.25642 1.02811 0.99618 0.98901 1.69865 1.42046 1.24155 1.26345 0.84991 0.78880 0.77885 0.77479 1.18490 1.21856 1.22506 1.75041 1.09120 1.17585 1.14392 1.78160 0.97402 1.18010 1.15605 1.21371 1.00515 0.92640 1.09494 1.20952 0.94113 0.97453 0.97181 1.19903 0.93390 0.95307 1.03086 1.20190 1.00022 0.91015 0.96156 1.21848 1.01834 1.00242 0.96101 1.21867 1.01427 0.99671 0.97230 0.89968 0.90555 0.89825 0.84255 0.90749 0.91261 0.86274 0.82925 0.75021 0.91665 0.95298 0.79840 0.94109 0.85601 0.84894 0.88839 0.93057 0.91185 0.92873 0.93097 0.91196 0.92901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.93 9.14 71.24 0.65 -0.28 16 2 C -0.05 -0.72 5.88 -19.88 -0.12 -0.83 16 3 C -0.16 -2.63 9.62 22.37 0.22 -2.41 16 4 C 0.11 2.13 6.69 22.51 0.15 2.28 16 5 O -0.32 -5.82 10.14 -92.38 -0.94 -6.75 16 6 C 0.06 1.00 4.87 71.98 0.35 1.35 16 7 C 0.12 1.89 6.82 86.38 0.59 2.48 16 8 N -0.29 -7.39 3.44 -347.73 -1.20 -8.59 16 9 C -0.01 -0.29 11.50 83.49 0.96 0.67 16 10 C -0.04 -1.43 6.61 41.59 0.28 -1.16 16 11 C 0.23 9.76 6.82 85.63 0.58 10.34 16 12 N -0.74 -39.00 5.59 -347.19 -1.94 -40.95 16 13 C -0.24 -13.70 9.99 84.03 0.84 -12.86 16 14 H 0.09 4.51 7.83 -2.91 -0.02 4.49 16 15 C -0.08 -4.54 5.50 84.86 0.47 -4.07 16 16 N -0.97 -61.24 13.06 21.65 0.28 -60.96 16 17 Si 0.98 46.52 29.55 68.60 2.03 48.55 16 18 H -0.26 -11.45 7.11 99.48 0.71 -10.75 16 19 H -0.29 -13.71 7.11 99.48 0.71 -13.01 16 20 H -0.30 -14.32 7.11 99.48 0.71 -13.62 16 21 N -0.29 -12.10 12.41 -48.60 -0.60 -12.70 16 22 N -0.11 -3.91 12.91 37.02 0.48 -3.43 16 23 C -0.22 -4.09 9.04 22.37 0.20 -3.88 16 24 C -0.08 -1.27 8.75 22.25 0.19 -1.08 16 25 C -0.12 -1.64 4.79 -19.85 -0.10 -1.73 16 26 C -0.06 -0.54 2.82 -11.54 -0.03 -0.57 16 27 C -0.14 -1.26 9.06 71.98 0.65 -0.61 16 28 C -0.14 -1.35 8.94 71.98 0.64 -0.70 16 29 H 0.08 0.54 8.14 -2.39 -0.02 0.52 16 30 H 0.08 0.50 8.05 -2.38 -0.02 0.48 16 31 H 0.08 0.49 6.53 -2.38 -0.02 0.47 16 32 H 0.14 1.93 8.06 -2.91 -0.02 1.91 16 33 H 0.07 1.23 7.66 -2.39 -0.02 1.21 16 34 H 0.07 1.37 7.64 -2.39 -0.02 1.35 16 35 H 0.12 1.77 8.14 -2.39 -0.02 1.75 16 36 H 0.15 1.40 8.07 -2.39 -0.02 1.38 16 37 H 0.23 4.19 8.06 -2.91 -0.02 4.17 16 38 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 39 H 0.03 1.26 8.14 -2.38 -0.02 1.24 16 40 H 0.37 21.42 7.66 -92.71 -0.71 20.71 16 41 H 0.25 15.20 8.31 -92.71 -0.77 14.43 16 42 H 0.13 2.25 6.30 -2.91 -0.02 2.23 16 43 H 0.13 1.78 7.10 -2.91 -0.02 1.76 16 44 H 0.09 0.69 5.71 -2.39 -0.01 0.68 16 45 H 0.05 0.51 7.75 -2.39 -0.02 0.49 16 46 H 0.07 0.45 8.14 -2.39 -0.02 0.43 16 47 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 48 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 49 H 0.07 0.48 8.14 -2.39 -0.02 0.46 16 50 H 0.05 0.53 7.08 -2.39 -0.02 0.51 16 Total: -1.00 -76.13 412.19 4.88 -71.25 By element: Atomic # 1 Polarization: 26.41 SS G_CDS: 0.24 Total: 26.64 kcal Atomic # 6 Polarization: -19.59 SS G_CDS: 6.53 Total: -13.06 kcal Atomic # 7 Polarization: -123.64 SS G_CDS: -2.98 Total: -126.62 kcal Atomic # 8 Polarization: -5.82 SS G_CDS: -0.94 Total: -6.75 kcal Atomic # 14 Polarization: 46.52 SS G_CDS: 2.03 Total: 48.55 kcal Total: -76.13 4.88 -71.25 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603174003.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.074 kcal (2) G-P(sol) polarization free energy of solvation -76.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.251 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds