Wall clock time and date at job start Wed Apr 1 2020 02:57:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86794 * 119.99453 * 2 1 4 4 H 1.48502 * 109.47080 * 269.99276 * 3 2 1 5 5 H 1.48495 * 109.47820 * 29.99948 * 3 2 1 6 6 H 1.48503 * 109.46930 * 150.00222 * 3 2 1 7 7 C 1.37878 * 120.00069 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00069 * 359.97438 * 7 2 1 9 9 C 1.50698 * 119.99646 * 180.02562 * 7 2 1 10 10 C 1.50702 * 109.46946 * 179.97438 * 9 7 2 11 11 C 1.35350 * 126.75487 * 125.01232 * 10 9 7 12 12 N 1.35307 * 106.17738 * 179.97438 * 11 10 9 13 13 C 1.46504 * 125.86774 * 180.02562 * 12 11 10 14 14 C 1.50704 * 109.47114 * 124.99835 * 13 12 11 15 15 O 1.21289 * 119.99855 * 0.02562 * 14 13 12 16 16 N 1.34774 * 120.00211 * 180.02562 * 14 13 12 17 17 C 1.46500 * 119.99951 * 180.02562 * 16 14 13 18 18 C 1.52995 * 109.47243 * 274.99707 * 17 16 14 19 19 C 1.52999 * 109.47089 * 300.00478 * 18 17 16 20 20 C 1.53002 * 109.46989 * 299.99494 * 19 18 17 21 21 C 1.52995 * 109.47492 * 300.00122 * 20 19 18 22 22 C 1.53003 * 109.46867 * 59.99685 * 21 20 19 23 23 C 1.52990 * 109.47373 * 180.02562 * 18 17 16 24 24 C 1.53001 * 109.47107 * 60.00539 * 22 21 20 25 25 C 1.53004 * 109.46819 * 154.99855 * 17 16 14 26 26 C 1.52999 * 109.47021 * 59.99824 * 25 17 16 27 27 N 1.28719 * 108.26459 * 0.02562 * 12 11 10 28 28 N 1.28634 * 110.17554 * 359.97438 * 27 12 11 29 29 H 0.96995 * 120.00272 * 0.02562 * 1 2 3 30 30 H 1.08998 * 109.47132 * 60.00016 * 9 7 2 31 31 H 1.09000 * 109.47099 * 299.99231 * 9 7 2 32 32 H 1.08003 * 126.90812 * 0.02562 * 11 10 9 33 33 H 1.08997 * 109.47010 * 245.00154 * 13 12 11 34 34 H 1.08996 * 109.46830 * 5.00379 * 13 12 11 35 35 H 0.96998 * 119.99843 * 359.97438 * 16 14 13 36 36 H 1.08999 * 109.47350 * 35.00020 * 17 16 14 37 37 H 1.09001 * 109.47198 * 59.99920 * 18 17 16 38 38 H 1.09004 * 109.47490 * 59.99916 * 19 18 17 39 39 H 1.09003 * 109.47049 * 179.97438 * 19 18 17 40 40 H 1.08999 * 109.46993 * 180.02562 * 20 19 18 41 41 H 1.09003 * 109.47108 * 300.00057 * 21 20 19 42 42 H 1.08992 * 109.47350 * 179.97438 * 21 20 19 43 43 H 1.09004 * 109.47253 * 179.97438 * 22 21 20 44 44 H 1.08999 * 109.47205 * 300.00304 * 23 18 17 45 45 H 1.09001 * 109.47494 * 179.97438 * 23 18 17 46 46 H 1.09003 * 109.47182 * 180.02562 * 24 22 21 47 47 H 1.09000 * 109.47241 * 59.99471 * 24 22 21 48 48 H 1.09003 * 109.47290 * 299.99872 * 25 17 16 49 49 H 1.09000 * 109.47168 * 179.97438 * 26 25 17 50 50 H 1.08999 * 109.47068 * 299.99814 * 26 25 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0014 9 6 3.5115 -1.1939 0.0011 10 6 4.0139 -2.6147 0.0023 11 6 4.8709 -3.1715 -0.8852 12 7 5.0362 -4.4563 -0.4944 13 6 5.8821 -5.4527 -1.1563 14 6 6.8531 -6.0298 -0.1585 15 8 6.8394 -5.6468 0.9922 16 7 7.7365 -6.9714 -0.5449 17 6 8.6799 -7.5327 0.4252 18 6 9.9099 -6.6280 0.5227 19 6 10.5834 -6.5334 -0.8478 20 6 11.0123 -7.9299 -1.3027 21 6 11.9976 -8.5161 -0.2897 22 6 11.3241 -8.6106 1.0808 23 6 10.8954 -7.2145 1.5353 24 6 10.0941 -9.5155 0.9834 25 6 9.1088 -8.9292 -0.0298 26 6 9.7822 -8.8346 -1.4003 27 7 4.3226 -4.6527 0.5587 28 7 3.7008 -3.5737 0.8808 29 1 -0.4850 0.8400 -0.0004 30 1 3.8745 -0.6799 0.8911 31 1 3.8752 -0.6804 -0.8889 32 1 5.3309 -2.6873 -1.7340 33 1 5.2574 -6.2502 -1.5584 34 1 6.4340 -4.9791 -1.9681 35 1 7.7471 -7.2780 -1.4651 36 1 8.2001 -7.6001 1.4016 37 1 9.6044 -5.6332 0.8468 38 1 9.8814 -6.1157 -1.5696 39 1 11.4594 -5.8885 -0.7784 40 1 11.4925 -7.8624 -2.2789 41 1 12.8738 -7.8715 -0.2203 42 1 12.3028 -9.5111 -0.6136 43 1 12.0259 -9.0287 1.8025 44 1 10.4159 -7.2823 2.5118 45 1 11.7719 -6.5702 1.6045 46 1 9.6140 -9.5824 1.9597 47 1 10.3997 -10.5103 0.6592 48 1 8.2325 -9.5738 -0.0992 49 1 10.0882 -9.8294 -1.7243 50 1 9.0803 -8.4169 -2.1220 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603187302.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:57:09 Heat of formation + Delta-G solvation = 44.369921 kcal Electronic energy + Delta-G solvation = -30421.858973 eV Core-core repulsion = 26449.966358 eV Total energy + Delta-G solvation = -3971.892615 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.57914 -42.08722 -39.48057 -35.20835 -34.44579 -33.11710 -33.10097 -33.04705 -31.59729 -31.20189 -28.76398 -27.69678 -26.34833 -25.75761 -23.11437 -22.52801 -22.03098 -21.90270 -21.31707 -20.66771 -19.90240 -18.33990 -17.53009 -17.03923 -16.63772 -15.97048 -15.82314 -15.54738 -15.35227 -14.88840 -14.54878 -14.36499 -14.11436 -14.01042 -13.93545 -13.80488 -13.66059 -13.20005 -12.97266 -12.92458 -12.86013 -12.66922 -12.13114 -12.06148 -11.99284 -11.49626 -11.37647 -11.33166 -11.28894 -11.06716 -10.59330 -10.53397 -10.39999 -10.31943 -10.16054 -10.08443 -10.03343 -9.77723 -9.35880 -9.28349 -9.25711 -8.49282 -8.19281 -5.95484 -3.93079 2.08009 2.30544 2.49172 3.01281 3.34689 3.43314 3.45927 3.50106 3.99958 4.02640 4.08927 4.25775 4.45051 4.50526 4.52134 4.59176 4.71759 4.73581 4.76411 4.78281 4.83095 4.88408 4.95225 4.99714 5.10473 5.18556 5.24813 5.29806 5.36370 5.36708 5.52759 5.54763 5.57523 5.61201 5.61847 5.67072 5.70869 5.74222 5.90124 5.97160 5.99074 6.02502 6.06267 6.17803 6.23599 6.91185 6.98268 7.15309 7.18537 7.27161 7.77976 7.90668 8.62583 9.12955 9.32180 9.63746 11.18059 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.028413 B = 0.002023 C = 0.001991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 985.218625 B =13837.793335 C =14063.265224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.067 3.933 3 Si 0.877 3.123 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.264 1.264 7 C -0.505 4.505 8 H 0.076 0.924 9 C 0.059 3.941 10 C 0.042 3.958 11 C -0.084 4.084 12 N -0.297 5.297 13 C 0.104 3.896 14 C 0.501 3.499 15 O -0.499 6.499 16 N -0.724 5.724 17 C 0.160 3.840 18 C -0.097 4.097 19 C -0.106 4.106 20 C -0.087 4.087 21 C -0.107 4.107 22 C -0.088 4.088 23 C -0.107 4.107 24 C -0.105 4.105 25 C -0.093 4.093 26 C -0.109 4.109 27 N -0.076 5.076 28 N -0.254 5.254 29 H 0.263 0.737 30 H 0.038 0.962 31 H 0.030 0.970 32 H 0.183 0.817 33 H 0.122 0.878 34 H 0.128 0.872 35 H 0.399 0.601 36 H 0.089 0.911 37 H 0.075 0.925 38 H 0.061 0.939 39 H 0.062 0.938 40 H 0.070 0.930 41 H 0.062 0.938 42 H 0.061 0.939 43 H 0.071 0.929 44 H 0.065 0.935 45 H 0.065 0.935 46 H 0.066 0.934 47 H 0.067 0.933 48 H 0.077 0.923 49 H 0.067 0.933 50 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.168 -21.744 -7.140 37.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.134 4.134 3 Si 0.704 3.296 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.189 1.189 7 C -0.543 4.543 8 H 0.095 0.905 9 C 0.020 3.980 10 C -0.095 4.095 11 C -0.231 4.231 12 N -0.093 5.093 13 C -0.023 4.023 14 C 0.284 3.716 15 O -0.371 6.371 16 N -0.379 5.379 17 C 0.056 3.944 18 C -0.116 4.116 19 C -0.144 4.144 20 C -0.105 4.105 21 C -0.145 4.145 22 C -0.107 4.107 23 C -0.145 4.145 24 C -0.143 4.143 25 C -0.112 4.112 26 C -0.146 4.146 27 N -0.055 5.055 28 N -0.122 5.122 29 H 0.073 0.927 30 H 0.056 0.944 31 H 0.049 0.951 32 H 0.200 0.800 33 H 0.140 0.860 34 H 0.146 0.854 35 H 0.234 0.766 36 H 0.107 0.893 37 H 0.094 0.906 38 H 0.080 0.920 39 H 0.081 0.919 40 H 0.088 0.912 41 H 0.080 0.920 42 H 0.080 0.920 43 H 0.090 0.910 44 H 0.084 0.916 45 H 0.084 0.916 46 H 0.085 0.915 47 H 0.086 0.914 48 H 0.096 0.904 49 H 0.085 0.915 50 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 28.550 -22.350 -5.216 36.631 hybrid contribution 0.775 1.424 -1.512 2.217 sum 29.326 -20.926 -6.728 36.649 Atomic orbital electron populations 1.69904 1.06216 1.26756 1.51163 1.24980 0.94774 0.98866 0.94807 0.86828 0.80530 0.83859 0.78414 1.20270 1.21260 1.18875 1.20927 0.88170 0.94849 1.50366 0.90545 1.18151 0.97739 0.84579 0.97500 1.22461 0.95892 0.99022 0.92101 1.23255 1.08515 0.85267 1.06111 1.46562 1.32446 1.09212 1.21081 1.21612 0.92921 0.93074 0.94698 1.20460 0.81375 0.80214 0.89538 1.90857 1.69130 1.58377 1.18734 1.45982 1.36059 1.41928 1.13883 1.20903 0.88543 0.91808 0.93153 1.21411 0.94789 0.99697 0.95748 1.21511 1.00120 0.96300 0.96448 1.21065 0.95763 0.95023 0.98688 1.21533 0.97597 1.00729 0.94610 1.21079 0.96835 0.95676 0.97075 1.21502 0.98754 0.95853 0.98359 1.21504 0.95349 0.98495 0.98961 1.21319 0.98633 0.95402 0.95835 1.21560 0.96904 1.00027 0.96144 1.78336 1.05528 1.21492 1.00180 1.75130 1.17707 0.96090 1.23248 0.92734 0.94408 0.95137 0.80034 0.86032 0.85381 0.76593 0.89256 0.90621 0.92010 0.91916 0.91180 0.91968 0.92010 0.91042 0.91627 0.91624 0.91525 0.91392 0.90415 0.91454 0.92126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.48 13.96 55.43 0.77 -27.71 16 2 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 3 Si 0.88 21.71 27.47 -169.99 -4.67 17.04 16 4 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 5 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 6 H -0.26 -6.27 6.54 56.52 0.37 -5.90 16 7 C -0.50 -15.05 9.64 -34.44 -0.33 -15.38 16 8 H 0.08 2.54 7.98 -52.49 -0.42 2.12 16 9 C 0.06 1.49 4.62 -29.04 -0.13 1.35 16 10 C 0.04 0.97 6.44 -82.78 -0.53 0.44 16 11 C -0.08 -1.52 11.49 -17.05 -0.20 -1.71 16 12 N -0.30 -5.08 3.20 -62.44 -0.20 -5.28 16 13 C 0.10 1.04 6.94 -5.19 -0.04 1.00 16 14 C 0.50 5.73 7.81 -10.98 -0.09 5.64 16 15 O -0.50 -8.55 15.34 5.55 0.09 -8.46 16 16 N -0.72 -5.28 4.23 -53.80 -0.23 -5.51 16 17 C 0.16 1.24 2.05 -67.93 -0.14 1.11 16 18 C -0.10 -0.75 2.88 -90.63 -0.26 -1.01 16 19 C -0.11 -0.65 5.03 -26.73 -0.13 -0.78 16 20 C -0.09 -0.42 3.19 -90.62 -0.29 -0.71 16 21 C -0.11 -0.52 5.19 -26.73 -0.14 -0.65 16 22 C -0.09 -0.48 3.19 -90.64 -0.29 -0.77 16 23 C -0.11 -0.73 5.19 -26.76 -0.14 -0.87 16 24 C -0.11 -0.56 5.19 -26.73 -0.14 -0.69 16 25 C -0.09 -0.51 2.88 -90.61 -0.26 -0.77 16 26 C -0.11 -0.46 5.02 -26.73 -0.13 -0.60 16 27 N -0.08 -1.68 12.13 60.35 0.73 -0.94 16 28 N -0.25 -6.41 12.40 33.29 0.41 -6.00 16 29 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 30 H 0.04 0.97 7.20 -51.93 -0.37 0.59 16 31 H 0.03 0.69 7.55 -51.93 -0.39 0.30 16 32 H 0.18 2.41 8.06 -52.48 -0.42 1.99 16 33 H 0.12 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.13 0.73 8.07 -51.93 -0.42 0.31 16 35 H 0.40 1.64 6.87 -40.82 -0.28 1.36 16 36 H 0.09 0.94 7.58 -51.93 -0.39 0.55 16 37 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.06 0.37 7.60 -51.93 -0.39 -0.03 16 39 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 40 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 41 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 42 H 0.06 0.27 8.14 -51.93 -0.42 -0.16 16 43 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 44 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 45 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 46 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 47 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 48 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 49 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 50 H 0.06 0.20 6.51 -51.93 -0.34 -0.14 16 LS Contribution 383.28 15.07 5.78 5.78 Total: -1.00 -39.03 383.28 -8.75 -47.78 By element: Atomic # 1 Polarization: 3.90 SS G_CDS: -8.10 Total: -4.19 kcal Atomic # 6 Polarization: -9.17 SS G_CDS: -3.34 Total: -12.51 kcal Atomic # 7 Polarization: -46.93 SS G_CDS: 1.49 Total: -45.44 kcal Atomic # 8 Polarization: -8.55 SS G_CDS: 0.09 Total: -8.46 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -4.67 Total: 17.04 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -39.03 -8.75 -47.78 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603187302.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.152 kcal (2) G-P(sol) polarization free energy of solvation -39.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.783 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds