Wall clock time and date at job start Wed Apr 1 2020 02:57:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86794 * 119.99453 * 2 1 4 4 H 1.48502 * 109.47080 * 269.99276 * 3 2 1 5 5 H 1.48495 * 109.47820 * 29.99948 * 3 2 1 6 6 H 1.48503 * 109.46930 * 150.00222 * 3 2 1 7 7 C 1.37878 * 120.00069 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00069 * 359.97438 * 7 2 1 9 9 C 1.50698 * 119.99646 * 180.02562 * 7 2 1 10 10 C 1.50702 * 109.46946 * 179.97438 * 9 7 2 11 11 C 1.35350 * 126.75487 * 125.01232 * 10 9 7 12 12 N 1.35307 * 106.17738 * 179.97438 * 11 10 9 13 13 C 1.46504 * 125.86774 * 180.02562 * 12 11 10 14 14 C 1.50704 * 109.47114 * 124.99835 * 13 12 11 15 15 O 1.21289 * 119.99855 * 0.02562 * 14 13 12 16 16 N 1.34774 * 120.00211 * 180.02562 * 14 13 12 17 17 C 1.46500 * 119.99951 * 180.02562 * 16 14 13 18 18 C 1.52995 * 109.47243 * 274.99707 * 17 16 14 19 19 C 1.52999 * 109.47089 * 300.00478 * 18 17 16 20 20 C 1.53002 * 109.46989 * 299.99494 * 19 18 17 21 21 C 1.52995 * 109.47492 * 300.00122 * 20 19 18 22 22 C 1.53003 * 109.46867 * 59.99685 * 21 20 19 23 23 C 1.52990 * 109.47373 * 180.02562 * 18 17 16 24 24 C 1.53001 * 109.47107 * 60.00539 * 22 21 20 25 25 C 1.53004 * 109.46819 * 154.99855 * 17 16 14 26 26 C 1.52999 * 109.47021 * 59.99824 * 25 17 16 27 27 N 1.28719 * 108.26459 * 0.02562 * 12 11 10 28 28 N 1.28634 * 110.17554 * 359.97438 * 27 12 11 29 29 H 0.96995 * 120.00272 * 0.02562 * 1 2 3 30 30 H 1.08998 * 109.47132 * 60.00016 * 9 7 2 31 31 H 1.09000 * 109.47099 * 299.99231 * 9 7 2 32 32 H 1.08003 * 126.90812 * 0.02562 * 11 10 9 33 33 H 1.08997 * 109.47010 * 245.00154 * 13 12 11 34 34 H 1.08996 * 109.46830 * 5.00379 * 13 12 11 35 35 H 0.96998 * 119.99843 * 359.97438 * 16 14 13 36 36 H 1.08999 * 109.47350 * 35.00020 * 17 16 14 37 37 H 1.09001 * 109.47198 * 59.99920 * 18 17 16 38 38 H 1.09004 * 109.47490 * 59.99916 * 19 18 17 39 39 H 1.09003 * 109.47049 * 179.97438 * 19 18 17 40 40 H 1.08999 * 109.46993 * 180.02562 * 20 19 18 41 41 H 1.09003 * 109.47108 * 300.00057 * 21 20 19 42 42 H 1.08992 * 109.47350 * 179.97438 * 21 20 19 43 43 H 1.09004 * 109.47253 * 179.97438 * 22 21 20 44 44 H 1.08999 * 109.47205 * 300.00304 * 23 18 17 45 45 H 1.09001 * 109.47494 * 179.97438 * 23 18 17 46 46 H 1.09003 * 109.47182 * 180.02562 * 24 22 21 47 47 H 1.09000 * 109.47241 * 59.99471 * 24 22 21 48 48 H 1.09003 * 109.47290 * 299.99872 * 25 17 16 49 49 H 1.09000 * 109.47168 * 179.97438 * 26 25 17 50 50 H 1.08999 * 109.47068 * 299.99814 * 26 25 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0014 9 6 3.5115 -1.1939 0.0011 10 6 4.0139 -2.6147 0.0023 11 6 4.8709 -3.1715 -0.8852 12 7 5.0362 -4.4563 -0.4944 13 6 5.8821 -5.4527 -1.1563 14 6 6.8531 -6.0298 -0.1585 15 8 6.8394 -5.6468 0.9922 16 7 7.7365 -6.9714 -0.5449 17 6 8.6799 -7.5327 0.4252 18 6 9.9099 -6.6280 0.5227 19 6 10.5834 -6.5334 -0.8478 20 6 11.0123 -7.9299 -1.3027 21 6 11.9976 -8.5161 -0.2897 22 6 11.3241 -8.6106 1.0808 23 6 10.8954 -7.2145 1.5353 24 6 10.0941 -9.5155 0.9834 25 6 9.1088 -8.9292 -0.0298 26 6 9.7822 -8.8346 -1.4003 27 7 4.3226 -4.6527 0.5587 28 7 3.7008 -3.5737 0.8808 29 1 -0.4850 0.8400 -0.0004 30 1 3.8745 -0.6799 0.8911 31 1 3.8752 -0.6804 -0.8889 32 1 5.3309 -2.6873 -1.7340 33 1 5.2574 -6.2502 -1.5584 34 1 6.4340 -4.9791 -1.9681 35 1 7.7471 -7.2780 -1.4651 36 1 8.2001 -7.6001 1.4016 37 1 9.6044 -5.6332 0.8468 38 1 9.8814 -6.1157 -1.5696 39 1 11.4594 -5.8885 -0.7784 40 1 11.4925 -7.8624 -2.2789 41 1 12.8738 -7.8715 -0.2203 42 1 12.3028 -9.5111 -0.6136 43 1 12.0259 -9.0287 1.8025 44 1 10.4159 -7.2823 2.5118 45 1 11.7719 -6.5702 1.6045 46 1 9.6140 -9.5824 1.9597 47 1 10.3997 -10.5103 0.6592 48 1 8.2325 -9.5738 -0.0992 49 1 10.0882 -9.8294 -1.7243 50 1 9.0803 -8.4169 -2.1220 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000603187302.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:57:08 Heat of formation + Delta-G solvation = 16.235146 kcal Electronic energy + Delta-G solvation = -30423.078988 eV Core-core repulsion = 26449.966358 eV Total energy + Delta-G solvation = -3973.112631 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -44.07505 -42.63956 -40.39379 -36.11670 -35.83663 -34.96579 -33.61370 -33.51725 -33.14479 -32.25753 -30.13655 -29.21891 -26.80068 -26.37924 -25.11302 -23.52379 -22.66154 -22.39735 -22.37209 -21.85351 -21.01682 -19.07216 -18.91730 -18.37063 -18.08589 -16.95808 -16.73301 -16.39389 -16.24515 -16.02170 -15.58202 -15.34831 -15.22845 -15.03228 -14.94994 -14.55457 -14.29064 -14.23702 -14.14560 -13.93913 -13.54960 -13.46526 -13.38405 -13.35898 -12.86565 -12.53624 -12.43507 -12.32359 -12.03996 -11.92175 -11.84630 -11.79065 -11.74593 -11.62861 -11.52484 -11.33837 -10.85316 -10.77633 -10.71885 -10.57151 -10.56509 -10.03183 -9.85111 -8.23349 -6.28402 0.72514 1.38367 1.40679 1.44138 1.46127 1.57594 1.78650 2.11792 2.41852 3.10418 3.41307 3.50438 3.55294 3.64196 3.72094 3.84271 4.00345 4.04322 4.12477 4.23735 4.25202 4.27651 4.30278 4.36555 4.40778 4.42451 4.47262 4.53600 4.70736 4.74117 4.76937 4.80704 4.89583 5.05066 5.06061 5.08760 5.14602 5.15050 5.16631 5.23281 5.24786 5.33505 5.37421 5.38441 5.47672 5.56148 5.59477 5.60988 5.62890 5.76654 6.33895 6.43416 6.76542 7.13899 7.32972 7.73058 8.94487 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.028413 B = 0.002023 C = 0.001991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 985.218625 B =13837.793335 C =14063.265224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C 0.000 4.000 3 Si 0.960 3.040 4 H -0.251 1.251 5 H -0.287 1.287 6 H -0.246 1.246 7 C -0.517 4.517 8 H 0.018 0.982 9 C 0.067 3.933 10 C -0.011 4.011 11 C -0.045 4.045 12 N -0.281 5.281 13 C 0.091 3.909 14 C 0.500 3.500 15 O -0.567 6.567 16 N -0.699 5.699 17 C 0.161 3.839 18 C -0.094 4.094 19 C -0.103 4.103 20 C -0.084 4.084 21 C -0.106 4.106 22 C -0.086 4.086 23 C -0.108 4.108 24 C -0.106 4.106 25 C -0.087 4.087 26 C -0.106 4.106 27 N -0.105 5.105 28 N -0.317 5.317 29 H 0.267 0.733 30 H 0.029 0.971 31 H 0.064 0.936 32 H 0.241 0.759 33 H 0.157 0.843 34 H 0.188 0.812 35 H 0.420 0.580 36 H 0.051 0.949 37 H 0.038 0.962 38 H 0.068 0.932 39 H 0.059 0.941 40 H 0.086 0.914 41 H 0.061 0.939 42 H 0.075 0.925 43 H 0.075 0.925 44 H 0.046 0.954 45 H 0.065 0.935 46 H 0.052 0.948 47 H 0.085 0.915 48 H 0.082 0.918 49 H 0.082 0.918 50 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 32.784 -22.253 -11.045 41.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.196 4.196 3 Si 0.782 3.218 4 H -0.176 1.176 5 H -0.213 1.213 6 H -0.169 1.169 7 C -0.555 4.555 8 H 0.036 0.964 9 C 0.028 3.972 10 C -0.149 4.149 11 C -0.195 4.195 12 N -0.077 5.077 13 C -0.032 4.032 14 C 0.285 3.715 15 O -0.444 6.444 16 N -0.353 5.353 17 C 0.056 3.944 18 C -0.114 4.114 19 C -0.140 4.140 20 C -0.102 4.102 21 C -0.143 4.143 22 C -0.104 4.104 23 C -0.147 4.147 24 C -0.144 4.144 25 C -0.106 4.106 26 C -0.143 4.143 27 N -0.084 5.084 28 N -0.184 5.184 29 H 0.076 0.924 30 H 0.047 0.953 31 H 0.082 0.918 32 H 0.258 0.742 33 H 0.174 0.826 34 H 0.205 0.795 35 H 0.259 0.741 36 H 0.069 0.931 37 H 0.056 0.944 38 H 0.087 0.913 39 H 0.078 0.922 40 H 0.104 0.896 41 H 0.079 0.921 42 H 0.093 0.907 43 H 0.094 0.906 44 H 0.065 0.935 45 H 0.084 0.916 46 H 0.071 0.929 47 H 0.103 0.897 48 H 0.100 0.900 49 H 0.101 0.899 50 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 32.210 -22.954 -9.168 40.601 hybrid contribution -0.308 1.401 -0.296 1.465 sum 31.902 -21.554 -9.464 39.646 Atomic orbital electron populations 1.70091 1.08581 1.28239 1.52657 1.26095 0.95749 1.03758 0.93957 0.85525 0.79231 0.77198 0.79860 1.17562 1.21344 1.16946 1.21120 0.91052 0.92836 1.50498 0.96403 1.17974 0.94189 0.86653 0.98363 1.22465 0.99235 0.98650 0.94554 1.23889 1.05412 0.84902 1.05256 1.47005 1.31044 1.10228 1.19393 1.22372 0.92783 0.93313 0.94757 1.20776 0.81691 0.80244 0.88817 1.90857 1.71150 1.60839 1.21563 1.45777 1.34507 1.40188 1.14817 1.20859 0.88155 0.93584 0.91819 1.21328 0.95103 0.97641 0.97326 1.21501 0.99935 0.97610 0.94981 1.21077 0.96067 0.93857 0.99221 1.21539 0.97481 1.01517 0.93802 1.21066 0.97072 0.94253 0.98009 1.21507 0.98413 0.97304 0.97432 1.21529 0.95161 0.99295 0.98454 1.21300 0.99017 0.93332 0.96945 1.21591 0.96786 1.00906 0.95063 1.78196 1.06972 1.20777 1.02461 1.75030 1.20011 0.97618 1.25704 0.92446 0.95303 0.91768 0.74244 0.82556 0.79482 0.74102 0.93084 0.94355 0.91311 0.92218 0.89612 0.92056 0.90668 0.90643 0.93525 0.91611 0.92884 0.89681 0.90006 0.89949 0.90527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -62.56 13.96 21.45 0.30 -62.26 16 2 C 0.00 0.02 5.47 84.65 0.46 0.48 16 3 Si 0.96 44.65 27.47 68.60 1.88 46.54 16 4 H -0.25 -10.65 7.11 99.48 0.71 -9.94 16 5 H -0.29 -13.31 7.11 99.48 0.71 -12.61 16 6 H -0.25 -10.65 6.54 99.48 0.65 -10.00 16 7 C -0.52 -31.99 9.64 25.60 0.25 -31.74 16 8 H 0.02 1.26 7.98 -2.91 -0.02 1.24 16 9 C 0.07 3.36 4.62 29.10 0.13 3.50 16 10 C -0.01 -0.52 6.44 41.60 0.27 -0.26 16 11 C -0.05 -1.50 11.49 83.49 0.96 -0.54 16 12 N -0.28 -9.07 3.20 -351.46 -1.12 -10.20 16 13 C 0.09 1.47 6.94 85.63 0.59 2.07 16 14 C 0.50 10.75 7.81 87.66 0.68 11.44 16 15 O -0.57 -20.14 15.34 -3.06 -0.05 -20.19 16 16 N -0.70 -8.76 4.23 -442.53 -1.87 -10.63 16 17 C 0.16 2.45 2.05 44.99 0.09 2.54 16 18 C -0.09 -1.48 2.88 -10.80 -0.03 -1.51 16 19 C -0.10 -1.03 5.03 30.59 0.15 -0.87 16 20 C -0.08 -0.50 3.19 -10.79 -0.03 -0.54 16 21 C -0.11 -0.72 5.19 30.59 0.16 -0.56 16 22 C -0.09 -0.83 3.19 -10.81 -0.03 -0.86 16 23 C -0.11 -1.56 5.19 30.57 0.16 -1.40 16 24 C -0.11 -0.99 5.19 30.60 0.16 -0.83 16 25 C -0.09 -0.78 2.88 -10.79 -0.03 -0.81 16 26 C -0.11 -0.47 5.02 30.59 0.15 -0.31 16 27 N -0.11 -4.73 12.13 37.02 0.45 -4.28 16 28 N -0.32 -16.73 12.40 -48.60 -0.60 -17.34 16 29 H 0.27 16.14 8.31 -92.71 -0.77 15.37 16 30 H 0.03 1.47 7.20 -2.39 -0.02 1.45 16 31 H 0.06 2.74 7.55 -2.39 -0.02 2.72 16 32 H 0.24 4.84 8.06 -2.91 -0.02 4.82 16 33 H 0.16 1.57 8.14 -2.39 -0.02 1.55 16 34 H 0.19 0.84 8.07 -2.39 -0.02 0.82 16 35 H 0.42 1.72 6.87 -92.71 -0.64 1.08 16 36 H 0.05 1.19 7.58 -2.39 -0.02 1.17 16 37 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 38 H 0.07 0.59 7.60 -2.38 -0.02 0.57 16 39 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 40 H 0.09 0.34 8.14 -2.39 -0.02 0.32 16 41 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 42 H 0.07 0.36 8.14 -2.39 -0.02 0.34 16 43 H 0.08 0.68 8.14 -2.38 -0.02 0.66 16 44 H 0.05 0.81 8.14 -2.39 -0.02 0.80 16 45 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 46 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 47 H 0.08 0.54 8.14 -2.39 -0.02 0.52 16 48 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 49 H 0.08 0.22 8.14 -2.39 -0.02 0.20 16 50 H 0.08 0.11 6.51 -2.39 -0.02 0.10 16 Total: -1.00 -96.59 383.28 3.33 -93.26 By element: Atomic # 1 Polarization: 5.05 SS G_CDS: 0.25 Total: 5.30 kcal Atomic # 6 Polarization: -24.30 SS G_CDS: 4.10 Total: -20.21 kcal Atomic # 7 Polarization: -101.85 SS G_CDS: -2.85 Total: -104.70 kcal Atomic # 8 Polarization: -20.14 SS G_CDS: -0.05 Total: -20.19 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 1.88 Total: 46.54 kcal Total: -96.59 3.33 -93.26 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603187302.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.494 kcal (2) G-P(sol) polarization free energy of solvation -96.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.259 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds