Wall clock time and date at job start Wed Apr 1 2020 03:47:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.30242 * 126.16932 * 2 1 4 4 N 1.39839 * 110.09094 * 179.97438 * 3 2 1 5 5 C 1.46494 * 125.38681 * 180.02562 * 4 3 2 6 6 C 1.36825 * 109.22600 * 0.02562 * 4 3 2 7 7 N 1.32757 * 133.58384 * 180.02562 * 6 4 3 8 8 C 1.31508 * 121.47665 * 179.97438 * 7 6 4 9 9 C 1.50700 * 119.20945 * 179.97438 * 8 7 6 10 10 C 1.38813 * 121.58941 * 359.97438 * 8 7 6 11 11 C 1.50699 * 120.17721 * 180.02562 * 10 8 7 12 12 C 1.53001 * 109.46500 * 90.00525 * 11 10 8 13 13 C 1.50709 * 109.46716 * 179.97438 * 12 11 10 14 14 O 1.21283 * 119.99688 * 0.02562 * 13 12 11 15 15 N 1.34779 * 119.99796 * 180.02562 * 13 12 11 16 16 C 1.46497 * 119.99943 * 180.02562 * 15 13 12 17 17 H 1.09007 * 109.47078 * 34.99474 * 16 15 13 18 18 C 1.53000 * 109.47021 * 275.00054 * 16 15 13 19 19 C 1.50694 * 109.47115 * 154.99835 * 16 15 13 20 20 H 1.08000 * 120.00563 * 359.97438 * 19 16 15 21 21 C 1.37885 * 119.99902 * 180.02562 * 19 16 15 22 22 N 1.31516 * 119.99913 * 359.97438 * 21 19 16 23 23 Si 1.86798 * 119.99766 * 179.97438 * 21 19 16 24 24 H 1.48500 * 109.47353 * 269.99586 * 23 21 19 25 25 H 1.48501 * 109.47293 * 30.00037 * 23 21 19 26 26 H 1.48504 * 109.46680 * 149.99835 * 23 21 19 27 27 C 1.37012 * 119.64142 * 0.28626 * 10 8 7 28 28 C 1.50703 * 120.92171 * 179.69783 * 27 10 8 29 29 C 1.39998 * 118.15981 * 359.46689 * 27 10 8 30 30 H 1.09007 * 109.47199 * 89.97479 * 1 2 3 31 31 H 1.09007 * 109.47170 * 209.97489 * 1 2 3 32 32 H 1.08997 * 109.47538 * 329.97279 * 1 2 3 33 33 H 1.09004 * 109.46864 * 269.95969 * 5 4 3 34 34 H 1.08997 * 109.47536 * 29.95786 * 5 4 3 35 35 H 1.08999 * 109.47619 * 149.95936 * 5 4 3 36 36 H 1.08990 * 109.47042 * 270.02253 * 9 8 7 37 37 H 1.09007 * 109.46708 * 30.01728 * 9 8 7 38 38 H 1.08992 * 109.47469 * 150.01184 * 9 8 7 39 39 H 1.09000 * 109.47301 * 330.00601 * 11 10 8 40 40 H 1.09000 * 109.47108 * 210.00287 * 11 10 8 41 41 H 1.08998 * 109.46869 * 60.00399 * 12 11 10 42 42 H 1.08995 * 109.47564 * 299.99999 * 12 11 10 43 43 H 0.96997 * 119.99849 * 0.02562 * 15 13 12 44 44 H 1.09002 * 109.47106 * 299.99878 * 18 16 15 45 45 H 1.08998 * 109.47089 * 59.99825 * 18 16 15 46 46 H 1.08995 * 109.47131 * 179.97438 * 18 16 15 47 47 H 0.97001 * 119.99646 * 179.97438 * 22 21 19 48 48 H 1.09004 * 109.47308 * 89.99643 * 28 27 10 49 49 H 1.08999 * 109.47273 * 209.99896 * 28 27 10 50 50 H 1.09001 * 109.47122 * 329.99662 * 28 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2756 1.0514 0.0000 4 7 3.6193 0.6641 0.0006 5 6 4.7652 1.5768 0.0013 6 6 3.6944 -0.7021 0.0004 7 7 4.7049 -1.5631 0.0012 8 6 4.5000 -2.8622 0.0012 9 6 5.6848 -3.7935 0.0015 10 6 3.2188 -3.3963 0.0010 11 6 3.0209 -4.8902 0.0017 12 6 2.9532 -5.3949 1.4445 13 6 2.7546 -6.8889 1.4452 14 8 2.6755 -7.4905 0.3951 15 7 2.6650 -7.5562 2.6128 16 6 2.4725 -9.0084 2.6135 17 1 3.0099 -9.4466 1.7724 18 6 0.9811 -9.3253 2.4865 19 6 3.0005 -9.5845 3.9020 20 1 3.4363 -8.9340 4.6459 21 6 2.9282 -10.9423 4.1309 22 7 2.3980 -11.7345 3.2249 23 14 3.5834 -11.6563 5.7278 24 1 5.0154 -12.0123 5.5602 25 1 3.4468 -10.6512 6.8124 26 1 2.8089 -12.8733 6.0803 27 6 2.1351 -2.5579 -0.0052 28 6 0.7316 -3.1065 -0.0124 29 6 2.3678 -1.1774 0.0003 30 1 -0.3634 0.0005 -1.0277 31 1 -0.3634 -0.8903 0.5135 32 1 -0.3634 0.8897 0.5142 33 1 5.0503 1.8027 -1.0262 34 1 4.4945 2.4995 0.5145 35 1 5.6034 1.1072 0.5161 36 1 5.9709 -4.0177 -1.0260 37 1 6.5203 -3.3183 0.5158 38 1 5.4204 -4.7177 0.5152 39 1 3.8556 -5.3676 -0.5115 40 1 2.0911 -5.1338 -0.5124 41 1 2.1184 -4.9176 1.9576 42 1 3.8829 -5.1514 1.9586 43 1 2.7279 -7.0748 3.4525 44 1 0.4436 -8.8871 3.3275 45 1 0.5992 -8.9086 1.5545 46 1 0.8379 -10.4058 2.4866 47 1 2.3475 -12.6898 3.3858 48 1 0.3877 -3.2384 1.0135 49 1 0.0719 -2.4102 -0.5301 50 1 0.7199 -4.0680 -0.5259 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000604573782.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:47:52 Heat of formation + Delta-G solvation = 40.783917 kcal Electronic energy + Delta-G solvation = -29818.562400 eV Core-core repulsion = 25846.514284 eV Total energy + Delta-G solvation = -3972.048116 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.87806 -39.36236 -38.56928 -35.55177 -34.84542 -33.86098 -32.97608 -32.36498 -30.66906 -29.95817 -28.80103 -27.86527 -27.52497 -25.97681 -25.25630 -24.01903 -21.85730 -21.49580 -20.61533 -19.66064 -19.34744 -17.79726 -17.26925 -16.77093 -16.17607 -15.91102 -15.57330 -15.23614 -14.92842 -14.50584 -14.04515 -14.01797 -13.94543 -13.87108 -13.43587 -13.39689 -13.16052 -12.97590 -12.83949 -12.76349 -12.65899 -12.47260 -12.36752 -12.16748 -11.93227 -11.72290 -11.60333 -11.53528 -11.08029 -10.99095 -10.93831 -10.86586 -10.69219 -10.31012 -10.23987 -10.11452 -9.56021 -9.06415 -9.01598 -8.89040 -8.55065 -8.20670 -7.89753 -6.12865 -4.22000 0.58802 1.13383 1.93422 2.17042 3.23893 3.30679 3.32294 3.42176 3.50340 3.83253 4.02181 4.12502 4.27010 4.36530 4.46779 4.70577 4.86495 4.88168 4.95003 4.96650 5.17195 5.18973 5.19432 5.19806 5.25950 5.27351 5.30880 5.38409 5.44844 5.48966 5.50885 5.61241 5.63580 5.74401 5.85713 5.89849 5.96256 6.09338 6.26029 6.35350 6.49804 6.68574 6.82383 6.96307 7.15382 7.28006 7.47167 7.56515 7.69585 7.79235 7.91662 8.15225 8.68265 8.78286 9.14703 9.45838 10.93040 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.018937 B = 0.002141 C = 0.002054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1478.240978 B =13073.484276 C =13630.869756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.111 3.889 3 N -0.249 5.249 4 N -0.399 5.399 5 C 0.116 3.884 6 C 0.317 3.683 7 N -0.511 5.511 8 C 0.210 3.790 9 C -0.112 4.112 10 C -0.174 4.174 11 C -0.056 4.056 12 C -0.138 4.138 13 C 0.500 3.500 14 O -0.557 6.557 15 N -0.711 5.711 16 C 0.264 3.736 17 H 0.048 0.952 18 C -0.146 4.146 19 C -0.533 4.533 20 H 0.061 0.939 21 C 0.066 3.934 22 N -0.883 5.883 23 Si 0.901 3.099 24 H -0.280 1.280 25 H -0.274 1.274 26 H -0.285 1.285 27 C 0.045 3.955 28 C -0.131 4.131 29 C -0.229 4.229 30 H 0.084 0.916 31 H 0.087 0.913 32 H 0.079 0.921 33 H 0.067 0.933 34 H 0.085 0.915 35 H 0.088 0.912 36 H 0.085 0.915 37 H 0.079 0.921 38 H 0.088 0.912 39 H 0.085 0.915 40 H 0.085 0.915 41 H 0.086 0.914 42 H 0.087 0.913 43 H 0.388 0.612 44 H 0.025 0.975 45 H 0.014 0.986 46 H 0.089 0.911 47 H 0.264 0.736 48 H 0.084 0.916 49 H 0.075 0.925 50 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.399 23.999 -6.136 24.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.067 4.067 3 N -0.064 5.064 4 N -0.190 5.190 5 C -0.026 4.026 6 C 0.079 3.921 7 N -0.227 5.227 8 C 0.062 3.938 9 C -0.170 4.170 10 C -0.178 4.178 11 C -0.094 4.094 12 C -0.178 4.178 13 C 0.285 3.715 14 O -0.436 6.436 15 N -0.358 5.358 16 C 0.162 3.838 17 H 0.066 0.934 18 C -0.205 4.205 19 C -0.572 4.572 20 H 0.079 0.921 21 C -0.138 4.138 22 N -0.521 5.521 23 Si 0.728 3.272 24 H -0.206 1.206 25 H -0.199 1.199 26 H -0.211 1.211 27 C 0.035 3.965 28 C -0.187 4.187 29 C -0.239 4.239 30 H 0.103 0.897 31 H 0.106 0.894 32 H 0.098 0.902 33 H 0.086 0.914 34 H 0.103 0.897 35 H 0.107 0.893 36 H 0.103 0.897 37 H 0.097 0.903 38 H 0.106 0.894 39 H 0.103 0.897 40 H 0.103 0.897 41 H 0.104 0.896 42 H 0.105 0.895 43 H 0.220 0.780 44 H 0.045 0.955 45 H 0.033 0.967 46 H 0.108 0.892 47 H 0.074 0.926 48 H 0.102 0.898 49 H 0.094 0.906 50 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 0.521 25.154 -6.905 26.089 hybrid contribution -0.215 -1.083 1.344 1.739 sum 0.306 24.071 -5.561 24.707 Atomic orbital electron populations 1.20412 0.85548 1.04199 1.03653 1.23413 0.96635 0.88460 0.98159 1.76632 0.86440 1.22920 1.20371 1.47932 1.04279 1.01552 1.65225 1.21742 0.84806 0.93051 1.02974 1.18892 0.90306 0.86028 0.96862 1.66557 1.33291 1.02405 1.20417 1.21096 0.94333 0.88548 0.89860 1.20913 0.94684 0.97572 1.03796 1.20130 0.92593 0.97282 1.07822 1.20243 1.04673 0.88189 0.96271 1.21682 1.03792 0.94071 0.98255 1.20438 0.77397 0.88977 0.84713 1.90655 1.51519 1.69998 1.31435 1.46553 1.71188 1.11213 1.06870 1.18723 0.93330 0.73796 0.97957 0.93412 1.22070 0.97733 1.04094 0.96609 1.21225 1.40685 0.92763 1.02506 0.92129 1.24895 0.94965 0.96873 0.97025 1.69904 1.43733 1.04466 1.33983 0.86459 0.78913 0.78636 0.83144 1.20563 1.19876 1.21084 1.19359 0.96406 0.89821 0.90921 1.21096 0.91721 1.02345 1.03531 1.20163 0.93514 0.94104 1.16103 0.89742 0.89440 0.90171 0.91407 0.89651 0.89330 0.89678 0.90254 0.89355 0.89664 0.89701 0.89587 0.89456 0.77967 0.95547 0.96658 0.89221 0.92592 0.89767 0.90587 0.89675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.54 9.36 36.00 0.34 -0.20 16 2 C 0.11 1.23 7.44 -80.23 -0.60 0.63 16 3 N -0.25 -3.06 12.40 34.82 0.43 -2.63 16 4 N -0.40 -4.90 4.04 -67.21 -0.27 -5.17 16 5 C 0.12 0.96 11.44 59.84 0.68 1.64 16 6 C 0.32 4.31 7.97 -156.12 -1.24 3.06 16 7 N -0.51 -6.87 10.30 -8.57 -0.09 -6.96 16 8 C 0.21 2.57 6.78 -82.52 -0.56 2.01 16 9 C -0.11 -1.11 9.33 36.01 0.34 -0.78 16 10 C -0.17 -2.06 5.11 -104.85 -0.54 -2.60 16 11 C -0.06 -0.68 3.55 -27.88 -0.10 -0.78 16 12 C -0.14 -1.78 5.54 -27.88 -0.15 -1.94 16 13 C 0.50 9.21 7.79 -10.98 -0.09 9.13 16 14 O -0.56 -12.43 15.65 5.56 0.09 -12.34 16 15 N -0.71 -14.17 5.07 -54.93 -0.28 -14.45 16 16 C 0.26 6.57 2.56 -69.09 -0.18 6.39 16 17 H 0.05 1.38 7.58 -51.92 -0.39 0.99 16 18 C -0.15 -3.58 9.26 37.16 0.34 -3.23 16 19 C -0.53 -13.92 8.73 -34.44 -0.30 -14.22 16 20 H 0.06 1.51 7.74 -52.49 -0.41 1.11 16 21 C 0.07 1.75 5.30 -17.82 -0.09 1.65 16 22 N -0.88 -24.64 11.32 55.43 0.63 -24.01 16 23 Si 0.90 20.43 29.54 -169.99 -5.02 15.41 16 24 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 25 H -0.27 -6.08 7.11 56.52 0.40 -5.67 16 26 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 27 C 0.04 0.51 5.91 -104.41 -0.62 -0.11 16 28 C -0.13 -1.13 8.79 36.01 0.32 -0.81 16 29 C -0.23 -2.85 6.16 -105.18 -0.65 -3.50 16 30 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.09 0.49 6.28 -51.93 -0.33 0.16 16 32 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 34 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.09 0.86 5.77 -51.93 -0.30 0.56 16 39 H 0.08 1.08 6.63 -51.93 -0.34 0.74 16 40 H 0.08 1.07 5.97 -51.93 -0.31 0.76 16 41 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 42 H 0.09 1.01 7.38 -51.93 -0.38 0.63 16 43 H 0.39 6.69 8.54 -40.82 -0.35 6.34 16 44 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 45 H 0.01 0.35 8.14 -51.93 -0.42 -0.08 16 46 H 0.09 2.39 6.07 -51.93 -0.32 2.08 16 47 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 48 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 49 H 0.08 0.53 5.95 -51.93 -0.31 0.22 16 50 H 0.08 0.76 6.03 -51.93 -0.31 0.45 16 LS Contribution 402.46 15.07 6.06 6.06 Total: -1.00 -33.57 402.46 -9.08 -42.65 By element: Atomic # 1 Polarization: 12.63 SS G_CDS: -7.53 Total: 5.09 kcal Atomic # 6 Polarization: -0.56 SS G_CDS: -3.09 Total: -3.66 kcal Atomic # 7 Polarization: -53.64 SS G_CDS: 0.42 Total: -53.22 kcal Atomic # 8 Polarization: -12.43 SS G_CDS: 0.09 Total: -12.34 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.02 Total: 15.41 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -33.57 -9.08 -42.65 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000604573782.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.432 kcal (2) G-P(sol) polarization free energy of solvation -33.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.648 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds