Wall clock time and date at job start Wed Apr 1 2020 03:47:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.30242 * 126.16932 * 2 1 4 4 N 1.39839 * 110.09094 * 179.97438 * 3 2 1 5 5 C 1.46494 * 125.38681 * 180.02562 * 4 3 2 6 6 C 1.36825 * 109.22600 * 0.02562 * 4 3 2 7 7 N 1.32757 * 133.58384 * 180.02562 * 6 4 3 8 8 C 1.31508 * 121.47665 * 179.97438 * 7 6 4 9 9 C 1.50700 * 119.20945 * 179.97438 * 8 7 6 10 10 C 1.38813 * 121.58941 * 359.97438 * 8 7 6 11 11 C 1.50699 * 120.17721 * 180.02562 * 10 8 7 12 12 C 1.53001 * 109.46500 * 90.00525 * 11 10 8 13 13 C 1.50709 * 109.46716 * 179.97438 * 12 11 10 14 14 O 1.21283 * 119.99688 * 0.02562 * 13 12 11 15 15 N 1.34779 * 119.99796 * 180.02562 * 13 12 11 16 16 C 1.46497 * 119.99943 * 180.02562 * 15 13 12 17 17 H 1.09007 * 109.47078 * 34.99474 * 16 15 13 18 18 C 1.53000 * 109.47021 * 275.00054 * 16 15 13 19 19 C 1.50694 * 109.47115 * 154.99835 * 16 15 13 20 20 H 1.08000 * 120.00563 * 359.97438 * 19 16 15 21 21 C 1.37885 * 119.99902 * 180.02562 * 19 16 15 22 22 N 1.31516 * 119.99913 * 359.97438 * 21 19 16 23 23 Si 1.86798 * 119.99766 * 179.97438 * 21 19 16 24 24 H 1.48500 * 109.47353 * 269.99586 * 23 21 19 25 25 H 1.48501 * 109.47293 * 30.00037 * 23 21 19 26 26 H 1.48504 * 109.46680 * 149.99835 * 23 21 19 27 27 C 1.37012 * 119.64142 * 0.28626 * 10 8 7 28 28 C 1.50703 * 120.92171 * 179.69783 * 27 10 8 29 29 C 1.39998 * 118.15981 * 359.46689 * 27 10 8 30 30 H 1.09007 * 109.47199 * 89.97479 * 1 2 3 31 31 H 1.09007 * 109.47170 * 209.97489 * 1 2 3 32 32 H 1.08997 * 109.47538 * 329.97279 * 1 2 3 33 33 H 1.09004 * 109.46864 * 269.95969 * 5 4 3 34 34 H 1.08997 * 109.47536 * 29.95786 * 5 4 3 35 35 H 1.08999 * 109.47619 * 149.95936 * 5 4 3 36 36 H 1.08990 * 109.47042 * 270.02253 * 9 8 7 37 37 H 1.09007 * 109.46708 * 30.01728 * 9 8 7 38 38 H 1.08992 * 109.47469 * 150.01184 * 9 8 7 39 39 H 1.09000 * 109.47301 * 330.00601 * 11 10 8 40 40 H 1.09000 * 109.47108 * 210.00287 * 11 10 8 41 41 H 1.08998 * 109.46869 * 60.00399 * 12 11 10 42 42 H 1.08995 * 109.47564 * 299.99999 * 12 11 10 43 43 H 0.96997 * 119.99849 * 0.02562 * 15 13 12 44 44 H 1.09002 * 109.47106 * 299.99878 * 18 16 15 45 45 H 1.08998 * 109.47089 * 59.99825 * 18 16 15 46 46 H 1.08995 * 109.47131 * 179.97438 * 18 16 15 47 47 H 0.97001 * 119.99646 * 179.97438 * 22 21 19 48 48 H 1.09004 * 109.47308 * 89.99643 * 28 27 10 49 49 H 1.08999 * 109.47273 * 209.99896 * 28 27 10 50 50 H 1.09001 * 109.47122 * 329.99662 * 28 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2756 1.0514 0.0000 4 7 3.6193 0.6641 0.0006 5 6 4.7652 1.5768 0.0013 6 6 3.6944 -0.7021 0.0004 7 7 4.7049 -1.5631 0.0012 8 6 4.5000 -2.8622 0.0012 9 6 5.6848 -3.7935 0.0015 10 6 3.2188 -3.3963 0.0010 11 6 3.0209 -4.8902 0.0017 12 6 2.9532 -5.3949 1.4445 13 6 2.7546 -6.8889 1.4452 14 8 2.6755 -7.4905 0.3951 15 7 2.6650 -7.5562 2.6128 16 6 2.4725 -9.0084 2.6135 17 1 3.0099 -9.4466 1.7724 18 6 0.9811 -9.3253 2.4865 19 6 3.0005 -9.5845 3.9020 20 1 3.4363 -8.9340 4.6459 21 6 2.9282 -10.9423 4.1309 22 7 2.3980 -11.7345 3.2249 23 14 3.5834 -11.6563 5.7278 24 1 5.0154 -12.0123 5.5602 25 1 3.4468 -10.6512 6.8124 26 1 2.8089 -12.8733 6.0803 27 6 2.1351 -2.5579 -0.0052 28 6 0.7316 -3.1065 -0.0124 29 6 2.3678 -1.1774 0.0003 30 1 -0.3634 0.0005 -1.0277 31 1 -0.3634 -0.8903 0.5135 32 1 -0.3634 0.8897 0.5142 33 1 5.0503 1.8027 -1.0262 34 1 4.4945 2.4995 0.5145 35 1 5.6034 1.1072 0.5161 36 1 5.9709 -4.0177 -1.0260 37 1 6.5203 -3.3183 0.5158 38 1 5.4204 -4.7177 0.5152 39 1 3.8556 -5.3676 -0.5115 40 1 2.0911 -5.1338 -0.5124 41 1 2.1184 -4.9176 1.9576 42 1 3.8829 -5.1514 1.9586 43 1 2.7279 -7.0748 3.4525 44 1 0.4436 -8.8871 3.3275 45 1 0.5992 -8.9086 1.5545 46 1 0.8379 -10.4058 2.4866 47 1 2.3475 -12.6898 3.3858 48 1 0.3877 -3.2384 1.0135 49 1 0.0719 -2.4102 -0.5301 50 1 0.7199 -4.0680 -0.5259 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000604573782.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:47:51 Heat of formation + Delta-G solvation = 20.391780 kcal Electronic energy + Delta-G solvation = -29819.446669 eV Core-core repulsion = 25846.514284 eV Total energy + Delta-G solvation = -3972.932385 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.73180 -40.63977 -39.72865 -36.78000 -36.27801 -34.82140 -34.24700 -33.78471 -31.81174 -30.73803 -30.30570 -28.68191 -28.35962 -27.30786 -26.81763 -25.04459 -22.96493 -22.63061 -21.89601 -20.97155 -20.45679 -18.86856 -18.64340 -17.88027 -17.24109 -17.10624 -16.97200 -16.68173 -16.17714 -15.95101 -15.18799 -14.96862 -14.68997 -14.57619 -14.47808 -14.45734 -14.25129 -14.03025 -13.93289 -13.65409 -13.50778 -13.48685 -13.35844 -13.28984 -13.14986 -12.88131 -12.86568 -12.78255 -12.65858 -12.44649 -12.34694 -12.22294 -12.10452 -11.84871 -11.72797 -11.06308 -10.94748 -10.65975 -10.52007 -10.42822 -9.78445 -9.65519 -9.08092 -8.14662 -6.31507 -0.26791 0.22612 1.15989 1.35055 1.46627 1.46912 1.57397 1.94207 2.38373 2.57426 2.77767 3.05803 3.15772 3.24672 3.48321 3.61341 3.81247 4.00109 4.05471 4.18026 4.27420 4.29449 4.34494 4.43999 4.53562 4.54155 4.59325 4.68551 4.73444 4.74743 4.75265 4.81241 4.83511 4.88084 4.92037 4.98256 4.98919 5.10289 5.16036 5.20371 5.27295 5.41398 5.46046 5.49659 5.66790 5.69812 5.76241 5.85115 5.96748 6.15695 6.43945 6.77446 6.90120 7.06685 7.36653 7.66381 8.91329 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.018937 B = 0.002141 C = 0.002054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1478.240978 B =13073.484276 C =13630.869756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.114 3.886 3 N -0.272 5.272 4 N -0.408 5.408 5 C 0.110 3.890 6 C 0.294 3.706 7 N -0.529 5.529 8 C 0.203 3.797 9 C -0.110 4.110 10 C -0.182 4.182 11 C -0.046 4.046 12 C -0.121 4.121 13 C 0.499 3.501 14 O -0.598 6.598 15 N -0.709 5.709 16 C 0.270 3.730 17 H -0.002 1.002 18 C -0.133 4.133 19 C -0.545 4.545 20 H 0.072 0.928 21 C 0.013 3.987 22 N -0.917 5.917 23 Si 0.970 3.030 24 H -0.279 1.279 25 H -0.260 1.260 26 H -0.285 1.285 27 C 0.050 3.950 28 C -0.132 4.132 29 C -0.247 4.247 30 H 0.100 0.900 31 H 0.102 0.898 32 H 0.090 0.910 33 H 0.076 0.924 34 H 0.100 0.900 35 H 0.090 0.910 36 H 0.093 0.907 37 H 0.084 0.916 38 H 0.090 0.910 39 H 0.077 0.923 40 H 0.081 0.919 41 H 0.111 0.889 42 H 0.107 0.893 43 H 0.404 0.596 44 H 0.039 0.961 45 H 0.015 0.985 46 H 0.063 0.937 47 H 0.264 0.736 48 H 0.098 0.902 49 H 0.094 0.906 50 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.948 25.503 -4.798 25.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.063 4.063 3 N -0.087 5.087 4 N -0.199 5.199 5 C -0.031 4.031 6 C 0.056 3.944 7 N -0.246 5.246 8 C 0.054 3.946 9 C -0.167 4.167 10 C -0.186 4.186 11 C -0.085 4.085 12 C -0.161 4.161 13 C 0.287 3.713 14 O -0.480 6.480 15 N -0.358 5.358 16 C 0.166 3.834 17 H 0.016 0.984 18 C -0.192 4.192 19 C -0.583 4.583 20 H 0.090 0.910 21 C -0.187 4.187 22 N -0.556 5.556 23 Si 0.794 3.206 24 H -0.204 1.204 25 H -0.184 1.184 26 H -0.211 1.211 27 C 0.040 3.960 28 C -0.188 4.188 29 C -0.257 4.257 30 H 0.118 0.882 31 H 0.121 0.879 32 H 0.109 0.891 33 H 0.095 0.905 34 H 0.119 0.881 35 H 0.109 0.891 36 H 0.111 0.889 37 H 0.103 0.897 38 H 0.108 0.892 39 H 0.095 0.905 40 H 0.100 0.900 41 H 0.129 0.871 42 H 0.125 0.875 43 H 0.239 0.761 44 H 0.058 0.942 45 H 0.034 0.966 46 H 0.082 0.918 47 H 0.074 0.926 48 H 0.117 0.883 49 H 0.113 0.887 50 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -0.020 26.716 -5.549 27.286 hybrid contribution -0.043 -1.505 0.851 1.730 sum -0.063 25.211 -4.698 25.645 Atomic orbital electron populations 1.20614 0.82718 1.05465 1.05026 1.24051 0.98254 0.87488 0.96552 1.76608 0.86696 1.23692 1.21655 1.48269 1.04982 1.01610 1.65047 1.21952 0.84081 0.93175 1.03847 1.19268 0.91072 0.86769 0.97325 1.66586 1.33645 1.02844 1.21483 1.21437 0.95218 0.88557 0.89358 1.20944 0.94209 0.97157 1.04408 1.20046 0.92805 0.96765 1.09002 1.20111 1.04246 0.88474 0.95633 1.21628 1.05775 0.89353 0.99367 1.21337 0.75600 0.91062 0.83337 1.90640 1.53043 1.71491 1.32862 1.46324 1.71662 1.09391 1.08423 1.18302 0.92753 0.76548 0.95798 0.98392 1.21886 0.97780 1.02431 0.97106 1.21567 1.40540 0.93258 1.02935 0.90957 1.25785 0.95174 0.97404 1.00299 1.70054 1.44872 1.04678 1.35951 0.85383 0.77965 0.77911 0.79299 1.20441 1.18448 1.21078 1.19645 0.97556 0.89431 0.89374 1.21198 0.90435 1.02505 1.04627 1.20453 0.93568 0.94941 1.16744 0.88150 0.87920 0.89148 0.90528 0.88103 0.89109 0.88907 0.89716 0.89182 0.90458 0.90044 0.87056 0.87458 0.76092 0.94162 0.96633 0.91776 0.92637 0.88329 0.88703 0.89974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.87 9.36 71.23 0.67 -0.20 16 2 C 0.11 2.33 7.44 44.76 0.33 2.66 16 3 N -0.27 -6.42 12.40 -43.75 -0.54 -6.96 16 4 N -0.41 -9.80 4.04 -366.56 -1.48 -11.28 16 5 C 0.11 1.76 11.44 127.77 1.46 3.22 16 6 C 0.29 7.82 7.97 134.12 1.07 8.89 16 7 N -0.53 -14.00 10.30 -181.03 -1.86 -15.86 16 8 C 0.20 4.78 6.78 42.74 0.29 5.07 16 9 C -0.11 -2.08 9.33 71.24 0.66 -1.42 16 10 C -0.18 -4.06 5.11 -20.02 -0.10 -4.17 16 11 C -0.05 -1.08 3.55 29.85 0.11 -0.97 16 12 C -0.12 -2.88 5.54 29.85 0.17 -2.71 16 13 C 0.50 17.99 7.79 87.66 0.68 18.67 16 14 O -0.60 -27.02 15.65 -3.04 -0.05 -27.07 16 15 N -0.71 -27.67 5.07 -446.09 -2.26 -29.93 16 16 C 0.27 13.59 2.56 44.24 0.11 13.70 16 17 H 0.00 -0.11 7.58 -2.38 -0.02 -0.13 16 18 C -0.13 -6.57 9.26 71.98 0.67 -5.90 16 19 C -0.54 -28.23 8.73 25.60 0.22 -28.01 16 20 H 0.07 3.49 7.74 -2.91 -0.02 3.47 16 21 C 0.01 0.71 5.30 84.66 0.45 1.16 16 22 N -0.92 -52.02 11.32 21.45 0.24 -51.78 16 23 Si 0.97 41.45 29.54 68.60 2.03 43.47 16 24 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16 25 H -0.26 -10.49 7.11 99.48 0.71 -9.78 16 26 H -0.29 -12.10 7.11 99.48 0.71 -11.39 16 27 C 0.05 1.04 5.91 -19.72 -0.12 0.92 16 28 C -0.13 -1.93 8.79 71.24 0.63 -1.30 16 29 C -0.25 -5.83 6.16 -20.23 -0.12 -5.96 16 30 H 0.10 0.80 8.14 -2.38 -0.02 0.78 16 31 H 0.10 0.80 6.28 -2.38 -0.01 0.78 16 32 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 33 H 0.08 1.06 8.14 -2.38 -0.02 1.04 16 34 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 35 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 36 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 37 H 0.08 1.49 8.14 -2.38 -0.02 1.47 16 38 H 0.09 1.65 5.77 -2.39 -0.01 1.64 16 39 H 0.08 1.92 6.63 -2.39 -0.02 1.90 16 40 H 0.08 1.96 5.97 -2.39 -0.01 1.95 16 41 H 0.11 2.15 8.14 -2.39 -0.02 2.13 16 42 H 0.11 2.19 7.38 -2.39 -0.02 2.17 16 43 H 0.40 13.14 8.54 -92.71 -0.79 12.34 16 44 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 45 H 0.01 0.71 8.14 -2.39 -0.02 0.69 16 46 H 0.06 3.50 6.07 -2.39 -0.01 3.48 16 47 H 0.26 14.22 8.31 -92.71 -0.77 13.45 16 48 H 0.10 1.19 8.14 -2.39 -0.02 1.18 16 49 H 0.09 1.02 5.95 -2.39 -0.01 1.00 16 50 H 0.08 1.29 6.03 -2.39 -0.01 1.27 16 Total: -1.00 -74.06 402.46 3.43 -70.63 By element: Atomic # 1 Polarization: 24.93 SS G_CDS: 0.18 Total: 25.12 kcal Atomic # 6 Polarization: -3.51 SS G_CDS: 7.17 Total: 3.66 kcal Atomic # 7 Polarization: -109.90 SS G_CDS: -5.91 Total: -115.81 kcal Atomic # 8 Polarization: -27.02 SS G_CDS: -0.05 Total: -27.07 kcal Atomic # 14 Polarization: 41.45 SS G_CDS: 2.03 Total: 43.47 kcal Total: -74.06 3.43 -70.63 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000604573782.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.017 kcal (2) G-P(sol) polarization free energy of solvation -74.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.625 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds