Wall clock time and date at job start Wed Apr 1 2020 03:45:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 N 1.31218 * 119.86003 * 2 1 4 4 C 1.33979 * 120.81465 * 180.27026 * 3 2 1 5 5 C 1.38865 * 132.57806 * 179.77824 * 4 3 2 6 6 C 1.38661 * 107.64830 * 179.97438 * 5 4 3 7 7 N 1.31417 * 108.99227 * 359.97438 * 6 5 4 8 8 N 1.37158 * 120.53772 * 359.74528 * 4 3 2 9 9 C 1.36526 * 119.79327 * 359.97438 * 8 4 3 10 10 C 1.50701 * 120.43977 * 180.02562 * 9 8 4 11 11 C 1.35522 * 119.11942 * 0.02562 * 9 8 4 12 12 C 1.50703 * 120.27273 * 179.97438 * 11 9 8 13 13 C 1.53000 * 109.46912 * 89.99935 * 12 11 9 14 14 C 1.50703 * 109.46912 * 179.97438 * 13 12 11 15 15 O 1.21278 * 119.99985 * 0.02562 * 14 13 12 16 16 N 1.34777 * 120.00161 * 179.97438 * 14 13 12 17 17 C 1.46496 * 120.00271 * 179.97438 * 16 14 13 18 18 C 1.50705 * 109.47066 * 90.00086 * 17 16 14 19 19 H 1.08001 * 119.99987 * 0.02562 * 18 17 16 20 20 C 1.37872 * 120.00127 * 179.97438 * 18 17 16 21 21 N 1.31512 * 120.00059 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 120.00144 * 180.02562 * 20 18 17 23 23 H 1.48505 * 109.47035 * 89.99867 * 22 20 18 24 24 H 1.48496 * 109.47390 * 210.00116 * 22 20 18 25 25 H 1.48496 * 109.47004 * 330.00404 * 22 20 18 26 26 C 1.46505 * 119.99832 * 0.02562 * 16 14 13 27 27 C 1.52999 * 109.47123 * 119.99467 * 26 16 14 28 28 C 1.52999 * 109.46805 * 239.99790 * 26 16 14 29 29 H 1.08998 * 109.47259 * 270.24014 * 1 2 3 30 30 H 1.09000 * 109.47315 * 30.23899 * 1 2 3 31 31 H 1.08999 * 109.47191 * 150.23786 * 1 2 3 32 32 H 1.08001 * 126.17470 * 0.02562 * 5 4 3 33 33 H 1.07999 * 125.50475 * 179.97438 * 6 5 4 34 34 H 1.09002 * 109.47083 * 269.97853 * 10 9 8 35 35 H 1.08994 * 109.47114 * 29.98134 * 10 9 8 36 36 H 1.09001 * 109.46839 * 149.98420 * 10 9 8 37 37 H 1.09002 * 109.47152 * 329.99707 * 12 11 9 38 38 H 1.09001 * 109.46980 * 209.99807 * 12 11 9 39 39 H 1.09001 * 109.47194 * 299.99742 * 13 12 11 40 40 H 1.08992 * 109.47399 * 59.99914 * 13 12 11 41 41 H 1.08998 * 109.47205 * 209.99950 * 17 16 14 42 42 H 1.08997 * 109.47416 * 330.00811 * 17 16 14 43 43 H 0.97001 * 120.00292 * 180.02562 * 21 20 18 44 44 H 1.09000 * 109.47237 * 359.97438 * 26 16 14 45 45 H 1.09000 * 109.46993 * 59.99938 * 27 26 16 46 46 H 1.09000 * 109.46852 * 179.97438 * 27 26 16 47 47 H 1.08993 * 109.47553 * 300.00108 * 27 26 16 48 48 H 1.08996 * 109.47415 * 60.00346 * 28 26 16 49 49 H 1.09005 * 109.46614 * 179.97438 * 28 26 16 50 50 H 1.08997 * 109.47486 * 299.99684 * 28 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1602 1.1380 0.0000 4 6 3.4998 1.1603 -0.0054 5 6 4.4222 2.1984 -0.0107 6 6 5.6892 1.6349 -0.0144 7 7 5.5750 0.3257 -0.0110 8 7 4.2163 -0.0092 -0.0059 9 6 3.5604 -1.2066 -0.0002 10 6 4.3331 -2.5004 0.0000 11 6 2.2052 -1.2162 0.0053 12 6 1.4548 -2.5231 0.0110 13 6 1.2066 -2.9623 1.4555 14 6 0.4556 -4.2688 1.4612 15 8 0.1495 -4.7969 0.4132 16 7 0.1250 -4.8510 2.6310 17 6 -0.6055 -6.1208 2.6366 18 6 0.3755 -7.2648 2.6339 19 1 1.4371 -7.0658 2.6290 20 6 -0.0820 -8.5653 2.6388 21 7 -1.3746 -8.8076 2.6453 22 14 1.1340 -9.9833 2.6362 23 1 1.4628 -10.3560 4.0356 24 1 0.5327 -11.1499 1.9415 25 1 2.3734 -9.5712 1.9296 26 6 0.4954 -4.2133 3.8969 27 6 -0.7685 -3.9101 4.7041 28 6 1.3980 -5.1546 4.6971 29 1 -0.3634 0.0043 1.0276 30 1 -0.3634 0.8878 -0.5175 31 1 -0.3633 -0.8921 -0.5101 32 1 4.1939 3.2540 -0.0110 33 1 6.6195 2.1834 -0.0192 34 1 4.5150 -2.8152 -1.0276 35 1 5.2857 -2.3547 0.5094 36 1 3.7575 -3.2673 0.5184 37 1 2.0435 -3.2824 -0.5036 38 1 0.5000 -2.3960 -0.4992 39 1 2.1614 -3.0893 1.9657 40 1 0.6179 -2.2030 1.9701 41 1 -1.2278 -6.1779 3.5296 42 1 -1.2362 -6.1811 1.7497 43 1 -1.6966 -9.7226 2.6492 44 1 1.0286 -3.2846 3.6937 45 1 -1.3014 -4.8389 4.9073 46 1 -0.4929 -3.4361 5.6461 47 1 -1.4116 -3.2396 4.1341 48 1 2.2984 -5.3705 4.1221 49 1 1.6739 -4.6799 5.6388 50 1 0.8652 -6.0834 4.9004 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000608815029.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:45:42 Heat of formation + Delta-G solvation = 66.312117 kcal Electronic energy + Delta-G solvation = -30676.035763 eV Core-core repulsion = 26705.094633 eV Total energy + Delta-G solvation = -3970.941130 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.55419 -39.56568 -38.70798 -36.14665 -35.54435 -33.95186 -32.85470 -31.21035 -30.87458 -30.11285 -28.62450 -28.03484 -27.22532 -26.76054 -24.79542 -22.89086 -22.30188 -21.77911 -21.14451 -20.93055 -18.75249 -18.04117 -17.11012 -16.50688 -16.43502 -16.32708 -15.42953 -15.20262 -15.06605 -14.49568 -14.38211 -13.99111 -13.86031 -13.64118 -13.57660 -13.50845 -13.34979 -13.11466 -12.84907 -12.66257 -12.46859 -12.31434 -12.20070 -12.01468 -11.88352 -11.69861 -11.60003 -11.28023 -11.21230 -11.04372 -10.92627 -10.91230 -10.85631 -10.58763 -10.41470 -10.05433 -9.96020 -9.58246 -9.42534 -8.93567 -8.44962 -7.99509 -7.69879 -6.06413 -4.09768 0.34679 0.69361 1.86679 2.42486 3.17203 3.27015 3.32630 3.35155 3.39865 3.57052 3.80557 3.88479 4.05464 4.41105 4.48324 4.67640 4.89956 4.92311 5.02529 5.06450 5.16575 5.17687 5.19930 5.24513 5.28255 5.32387 5.35439 5.42716 5.50401 5.55445 5.60665 5.63612 5.66397 5.72999 5.90254 5.96779 6.01097 6.11137 6.19598 6.21986 6.22737 6.31809 6.39239 6.54852 6.90857 7.07363 7.25515 7.43635 7.48561 7.52624 7.90195 8.22285 8.39873 8.87797 9.04760 9.54522 11.01732 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.015585 B = 0.002703 C = 0.002572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1796.149254 B =10357.595041 C =10882.574236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C 0.222 3.778 3 N -0.477 5.477 4 C 0.265 3.735 5 C -0.277 4.277 6 C 0.087 3.913 7 N -0.319 5.319 8 N -0.310 5.310 9 C 0.197 3.803 10 C -0.124 4.124 11 C -0.184 4.184 12 C -0.052 4.052 13 C -0.139 4.139 14 C 0.505 3.495 15 O -0.541 6.541 16 N -0.592 5.592 17 C 0.246 3.754 18 C -0.519 4.519 19 H 0.058 0.942 20 C 0.060 3.940 21 N -0.895 5.895 22 Si 0.894 3.106 23 H -0.281 1.281 24 H -0.286 1.286 25 H -0.275 1.275 26 C 0.133 3.867 27 C -0.162 4.162 28 C -0.157 4.157 29 H 0.092 0.908 30 H 0.085 0.915 31 H 0.093 0.907 32 H 0.159 0.841 33 H 0.195 0.805 34 H 0.095 0.905 35 H 0.087 0.913 36 H 0.101 0.899 37 H 0.090 0.910 38 H 0.096 0.904 39 H 0.086 0.914 40 H 0.088 0.912 41 H 0.034 0.966 42 H 0.042 0.958 43 H 0.262 0.738 44 H 0.074 0.926 45 H 0.068 0.932 46 H 0.058 0.942 47 H 0.052 0.948 48 H 0.053 0.947 49 H 0.048 0.952 50 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.705 19.453 -1.191 20.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.058 3.942 3 N -0.190 5.190 4 C 0.037 3.963 5 C -0.308 4.308 6 C -0.091 4.091 7 N -0.143 5.143 8 N -0.081 5.081 9 C 0.081 3.919 10 C -0.181 4.181 11 C -0.191 4.191 12 C -0.091 4.091 13 C -0.179 4.179 14 C 0.291 3.709 15 O -0.419 6.419 16 N -0.323 5.323 17 C 0.127 3.873 18 C -0.558 4.558 19 H 0.076 0.924 20 C -0.141 4.141 21 N -0.534 5.534 22 Si 0.722 3.278 23 H -0.207 1.207 24 H -0.212 1.212 25 H -0.199 1.199 26 C 0.028 3.972 27 C -0.220 4.220 28 C -0.215 4.215 29 H 0.111 0.889 30 H 0.104 0.896 31 H 0.112 0.888 32 H 0.177 0.823 33 H 0.212 0.788 34 H 0.113 0.887 35 H 0.106 0.894 36 H 0.119 0.881 37 H 0.108 0.892 38 H 0.114 0.886 39 H 0.104 0.896 40 H 0.106 0.894 41 H 0.052 0.948 42 H 0.060 0.940 43 H 0.072 0.928 44 H 0.092 0.908 45 H 0.087 0.913 46 H 0.077 0.923 47 H 0.071 0.929 48 H 0.072 0.928 49 H 0.067 0.933 50 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 7.890 18.858 -1.729 20.515 hybrid contribution 0.778 -0.693 0.185 1.058 sum 8.668 18.165 -1.544 20.187 Atomic orbital electron populations 1.20956 0.86917 1.04823 1.04419 1.21845 0.97807 0.86822 0.87696 1.68085 1.03925 1.28548 1.18403 1.20766 0.88304 0.86890 1.00350 1.20901 0.89605 0.98609 1.21663 1.23796 0.98922 0.91009 0.95396 1.77836 0.89433 1.15603 1.31413 1.47146 1.07390 1.05821 1.47791 1.20545 0.91300 0.86289 0.93727 1.21084 1.00842 0.91248 1.04915 1.20220 0.91225 0.98385 1.09249 1.20280 1.00964 0.90858 0.96970 1.21726 1.01648 0.96993 0.97533 1.20200 0.80493 0.85891 0.84296 1.90680 1.54935 1.65249 1.31073 1.48345 1.55844 1.24273 1.03879 1.19240 0.91843 0.77939 0.98309 1.21418 0.93242 0.90543 1.50552 0.92426 1.24919 0.95157 0.98761 0.95304 1.69923 1.12464 1.20413 1.50632 0.86565 0.81328 0.81973 0.77965 1.20726 1.21168 1.19947 1.21000 0.95440 0.95485 0.85276 1.22157 0.98057 1.02477 0.99329 1.22142 0.99901 1.01188 0.98315 0.88936 0.89613 0.88843 0.82345 0.78785 0.88702 0.89374 0.88086 0.89170 0.88599 0.89557 0.89381 0.94834 0.94030 0.92782 0.90841 0.91251 0.92317 0.92878 0.92792 0.93310 0.89997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.95 9.80 36.00 0.35 -0.59 16 2 C 0.22 2.50 6.83 -82.10 -0.56 1.94 16 3 N -0.48 -6.25 10.40 -8.46 -0.09 -6.33 16 4 C 0.27 3.59 7.92 -155.52 -1.23 2.36 16 5 C -0.28 -3.14 10.91 -39.19 -0.43 -3.57 16 6 C 0.09 0.89 11.94 -17.57 -0.21 0.68 16 7 N -0.32 -4.12 12.52 30.47 0.38 -3.74 16 8 N -0.31 -4.16 3.90 -8.49 -0.03 -4.19 16 9 C 0.20 2.36 6.86 -81.47 -0.56 1.80 16 10 C -0.12 -1.25 9.28 36.01 0.33 -0.91 16 11 C -0.18 -2.08 5.12 -104.84 -0.54 -2.61 16 12 C -0.05 -0.60 3.56 -27.88 -0.10 -0.70 16 13 C -0.14 -1.74 3.86 -27.88 -0.11 -1.84 16 14 C 0.50 9.26 7.67 -10.98 -0.08 9.17 16 15 O -0.54 -12.19 15.56 5.56 0.09 -12.11 16 16 N -0.59 -11.38 2.39 -167.47 -0.40 -11.78 16 17 C 0.25 6.00 4.59 -5.19 -0.02 5.97 16 18 C -0.52 -13.80 7.83 -34.44 -0.27 -14.07 16 19 H 0.06 1.53 7.63 -52.49 -0.40 1.13 16 20 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 21 N -0.90 -25.76 13.29 55.43 0.74 -25.02 16 22 Si 0.89 21.22 29.54 -169.99 -5.02 16.20 16 23 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 24 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 25 H -0.27 -6.50 7.11 56.52 0.40 -6.09 16 26 C 0.13 1.99 3.17 -67.93 -0.22 1.78 16 27 C -0.16 -2.21 9.17 37.16 0.34 -1.87 16 28 C -0.16 -2.45 8.48 37.16 0.31 -2.14 16 29 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 30 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.09 0.72 6.00 -51.93 -0.31 0.40 16 32 H 0.16 1.45 8.06 -52.49 -0.42 1.03 16 33 H 0.20 1.15 8.06 -52.49 -0.42 0.73 16 34 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.09 0.89 8.13 -51.93 -0.42 0.46 16 36 H 0.10 0.98 5.86 -51.93 -0.30 0.67 16 37 H 0.09 1.10 6.66 -51.93 -0.35 0.75 16 38 H 0.10 1.08 5.96 -51.93 -0.31 0.77 16 39 H 0.09 0.99 7.04 -51.93 -0.37 0.63 16 40 H 0.09 0.93 7.79 -51.93 -0.40 0.53 16 41 H 0.03 0.84 6.42 -51.93 -0.33 0.50 16 42 H 0.04 1.17 7.42 -51.93 -0.39 0.78 16 43 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 44 H 0.07 0.91 5.77 -51.93 -0.30 0.61 16 45 H 0.07 1.10 6.66 -51.93 -0.35 0.75 16 46 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 47 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 48 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 49 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 50 H 0.08 1.53 6.93 -51.93 -0.36 1.17 16 LS Contribution 401.05 15.07 6.04 6.04 Total: -1.00 -33.88 401.05 -8.90 -42.78 By element: Atomic # 1 Polarization: 8.72 SS G_CDS: -7.53 Total: 1.20 kcal Atomic # 6 Polarization: 0.03 SS G_CDS: -3.08 Total: -3.05 kcal Atomic # 7 Polarization: -51.66 SS G_CDS: 0.60 Total: -51.06 kcal Atomic # 8 Polarization: -12.19 SS G_CDS: 0.09 Total: -12.11 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -33.88 -8.90 -42.78 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000608815029.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.092 kcal (2) G-P(sol) polarization free energy of solvation -33.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.780 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds