Wall clock time and date at job start Wed Apr 1 2020 03:48:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30243 * 126.16733 * 2 1 4 4 N 1.39838 * 110.08902 * 179.97438 * 3 2 1 5 5 C 1.46497 * 125.38383 * 180.02562 * 4 3 2 6 6 C 1.36824 * 109.22383 * 0.02562 * 4 3 2 7 7 N 1.32765 * 133.57435 * 179.97438 * 6 4 3 8 8 C 1.31512 * 121.47230 * 179.72974 * 7 6 4 9 9 C 1.50693 * 119.20773 * 180.26382 * 8 7 6 10 10 C 1.38801 * 121.58429 * 0.54220 * 8 7 6 11 11 C 1.50698 * 120.17448 * 179.74425 * 10 8 7 12 12 C 1.50694 * 109.47249 * 269.72038 * 11 10 8 13 13 O 1.21284 * 120.00046 * 359.97438 * 12 11 10 14 14 N 1.34784 * 120.00341 * 179.97438 * 12 11 10 15 15 C 1.46495 * 119.99580 * 0.02562 * 14 12 11 16 16 C 1.46493 * 119.99951 * 180.02562 * 14 12 11 17 17 H 1.08996 * 109.47335 * 359.97438 * 16 14 12 18 18 C 1.52997 * 109.47170 * 120.00144 * 16 14 12 19 19 C 1.50703 * 109.46983 * 239.99607 * 16 14 12 20 20 H 1.07998 * 120.00221 * 354.06110 * 19 16 14 21 21 C 1.37883 * 120.00025 * 174.05747 * 19 16 14 22 22 N 1.31510 * 119.99883 * 156.80663 * 21 19 16 23 23 Si 1.86797 * 119.99833 * 337.07741 * 21 19 16 24 24 H 1.48505 * 109.47111 * 179.72676 * 23 21 19 25 25 H 1.48501 * 109.47415 * 299.72534 * 23 21 19 26 26 H 1.48500 * 109.47210 * 59.72820 * 23 21 19 27 27 C 1.37018 * 119.65016 * 359.46682 * 10 8 7 28 28 C 1.50706 * 120.92301 * 180.27666 * 27 10 8 29 29 C 1.39997 * 118.15488 * 0.25082 * 27 10 8 30 30 H 1.09000 * 109.47214 * 263.75664 * 1 2 3 31 31 H 1.08999 * 109.47289 * 23.75680 * 1 2 3 32 32 H 1.09003 * 109.46607 * 143.75815 * 1 2 3 33 33 H 1.09005 * 109.47314 * 90.02897 * 5 4 3 34 34 H 1.09007 * 109.47238 * 210.02715 * 5 4 3 35 35 H 1.09000 * 109.47768 * 330.02678 * 5 4 3 36 36 H 1.08999 * 109.47171 * 270.27020 * 9 8 7 37 37 H 1.09009 * 109.47092 * 30.27092 * 9 8 7 38 38 H 1.08994 * 109.47342 * 150.27321 * 9 8 7 39 39 H 1.09004 * 109.47396 * 149.71904 * 11 10 8 40 40 H 1.09005 * 109.47210 * 29.72291 * 11 10 8 41 41 H 1.09007 * 109.47176 * 269.99875 * 15 14 12 42 42 H 1.08998 * 109.47410 * 30.00290 * 15 14 12 43 43 H 1.09004 * 109.47052 * 150.00297 * 15 14 12 44 44 H 1.09002 * 109.47433 * 52.75433 * 18 16 14 45 45 H 1.08997 * 109.47513 * 172.75743 * 18 16 14 46 46 H 1.09003 * 109.47132 * 292.75267 * 18 16 14 47 47 H 0.97000 * 119.99926 * 355.15887 * 22 21 19 48 48 H 1.09001 * 109.47185 * 93.73592 * 28 27 10 49 49 H 1.08997 * 109.46744 * 213.73775 * 28 27 10 50 50 H 1.08998 * 109.46913 * 333.73759 * 28 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2756 1.0514 0.0000 4 7 3.6193 0.6642 0.0006 5 6 4.7652 1.5769 0.0013 6 6 3.6944 -0.7020 0.0004 7 7 4.7050 -1.5630 0.0003 8 6 4.5003 -2.8621 0.0054 9 6 5.6851 -3.7932 0.0111 10 6 3.2191 -3.3961 -0.0001 11 6 3.0212 -4.8901 0.0002 12 6 2.9550 -5.3883 -1.4204 13 8 3.0578 -4.6071 -2.3425 14 7 2.7814 -6.7021 -1.6665 15 6 2.6567 -7.6456 -0.5528 16 6 2.7176 -7.1864 -3.0476 17 1 2.8282 -6.3460 -3.7328 18 6 3.8447 -8.1927 -3.2878 19 6 1.3881 -7.8554 -3.2843 20 1 0.7022 -7.9995 -2.4627 21 6 1.0473 -8.2833 -4.5500 22 7 0.1535 -9.2357 -4.7036 23 14 1.8607 -7.5155 -6.0461 24 1 1.3295 -8.1507 -7.2789 25 1 1.5702 -6.0595 -6.0749 26 1 3.3289 -7.7261 -5.9739 27 6 2.1353 -2.5578 0.0000 28 6 0.7317 -3.1067 0.0004 29 6 2.3679 -1.1773 0.0003 30 1 -0.3634 -0.1118 1.0216 31 1 -0.3634 0.9406 -0.4140 32 1 -0.3632 -0.8289 -0.6076 33 1 5.0493 1.8027 1.0292 34 1 5.6040 1.1074 -0.5127 35 1 4.4951 2.4997 -0.5121 36 1 5.9753 -4.0182 -1.0152 37 1 6.5184 -3.3177 0.5285 38 1 5.4186 -4.7172 0.5241 39 1 2.0914 -5.1334 0.5143 40 1 3.8559 -5.3671 0.5140 41 1 3.6446 -8.0142 -0.2765 42 1 2.2049 -7.1416 0.3015 43 1 2.0278 -8.4831 -0.8549 44 1 3.8101 -8.9669 -2.5212 45 1 3.7216 -8.6485 -4.2702 46 1 4.8054 -7.6797 -3.2431 47 1 -0.2142 -9.6857 -3.9269 48 1 0.3692 -3.1765 1.0260 49 1 0.0821 -2.4432 -0.5703 50 1 0.7289 -4.0974 -0.4542 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609143116.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:48:32 Heat of formation + Delta-G solvation = 40.015514 kcal Electronic energy + Delta-G solvation = -31097.179459 eV Core-core repulsion = 27125.098022 eV Total energy + Delta-G solvation = -3972.081437 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.76466 -40.97463 -39.50289 -37.17239 -36.17473 -34.88042 -34.24655 -33.68508 -32.11226 -30.74532 -29.56477 -28.72122 -28.00409 -27.55127 -26.77500 -26.06117 -23.43122 -22.68124 -22.08905 -20.50042 -19.96320 -19.48436 -18.67978 -18.09026 -17.77463 -17.05334 -16.84090 -16.65572 -16.22361 -15.60230 -15.16970 -15.11609 -14.82056 -14.58432 -14.54812 -14.45452 -14.23414 -14.09635 -13.99274 -13.83378 -13.64806 -13.52934 -13.50367 -13.38908 -13.29208 -13.20697 -13.09437 -12.88740 -12.58490 -12.43018 -12.37789 -12.33210 -11.93070 -11.82869 -11.70917 -11.21055 -11.06601 -10.61457 -10.51007 -10.43106 -9.79610 -9.43121 -9.10368 -8.67888 -6.33716 -0.27406 0.19906 1.13856 1.31642 1.42379 1.49129 1.68074 1.83147 2.31671 2.42900 2.69296 2.99737 3.03340 3.21648 3.45575 3.54015 3.78069 3.87290 4.00943 4.08390 4.22771 4.29670 4.33080 4.38033 4.44146 4.48079 4.56030 4.57195 4.60431 4.64781 4.70505 4.72199 4.74364 4.75836 4.77493 4.86703 4.89708 4.94626 5.04760 5.05858 5.15443 5.19431 5.30759 5.35286 5.42920 5.64795 5.77479 5.83072 5.87914 6.08851 6.40633 6.61843 6.81022 6.87611 7.32206 7.47619 8.62524 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.014403 B = 0.003120 C = 0.002955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1943.617498 B = 8973.449971 C = 9473.551034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.113 3.887 3 N -0.270 5.270 4 N -0.408 5.408 5 C 0.110 3.890 6 C 0.296 3.704 7 N -0.529 5.529 8 C 0.205 3.795 9 C -0.107 4.107 10 C -0.172 4.172 11 C -0.081 4.081 12 C 0.503 3.497 13 O -0.596 6.596 14 N -0.597 5.597 15 C 0.077 3.923 16 C 0.236 3.764 17 H 0.025 0.975 18 C -0.147 4.147 19 C -0.608 4.608 20 H 0.040 0.960 21 C 0.002 3.998 22 N -0.925 5.925 23 Si 1.060 2.940 24 H -0.282 1.282 25 H -0.287 1.287 26 H -0.249 1.249 27 C 0.050 3.950 28 C -0.126 4.126 29 C -0.252 4.252 30 H 0.108 0.892 31 H 0.090 0.910 32 H 0.093 0.907 33 H 0.082 0.918 34 H 0.087 0.913 35 H 0.100 0.900 36 H 0.074 0.926 37 H 0.091 0.909 38 H 0.107 0.893 39 H 0.125 0.875 40 H 0.137 0.863 41 H 0.076 0.924 42 H 0.094 0.906 43 H 0.056 0.944 44 H 0.061 0.939 45 H 0.046 0.954 46 H 0.045 0.955 47 H 0.260 0.740 48 H 0.114 0.886 49 H 0.086 0.914 50 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.884 13.773 16.938 22.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.065 4.065 3 N -0.084 5.084 4 N -0.200 5.200 5 C -0.030 4.030 6 C 0.057 3.943 7 N -0.246 5.246 8 C 0.057 3.943 9 C -0.164 4.164 10 C -0.176 4.176 11 C -0.120 4.120 12 C 0.292 3.708 13 O -0.477 6.477 14 N -0.327 5.327 15 C -0.065 4.065 16 C 0.132 3.868 17 H 0.043 0.957 18 C -0.205 4.205 19 C -0.646 4.646 20 H 0.058 0.942 21 C -0.200 4.200 22 N -0.560 5.560 23 Si 0.884 3.116 24 H -0.208 1.208 25 H -0.213 1.213 26 H -0.173 1.173 27 C 0.040 3.960 28 C -0.182 4.182 29 C -0.262 4.262 30 H 0.126 0.874 31 H 0.108 0.892 32 H 0.112 0.888 33 H 0.100 0.900 34 H 0.106 0.894 35 H 0.118 0.882 36 H 0.093 0.907 37 H 0.110 0.890 38 H 0.125 0.875 39 H 0.143 0.857 40 H 0.155 0.845 41 H 0.094 0.906 42 H 0.112 0.888 43 H 0.075 0.925 44 H 0.080 0.920 45 H 0.065 0.935 46 H 0.064 0.936 47 H 0.070 0.930 48 H 0.133 0.867 49 H 0.105 0.895 50 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 7.960 15.955 14.813 23.181 hybrid contribution -0.952 -1.135 1.156 1.879 sum 7.008 14.820 15.968 22.885 Atomic orbital electron populations 1.20616 0.82777 1.05004 1.05278 1.24033 0.98273 0.87506 0.96657 1.76575 0.86668 1.23442 1.21731 1.48263 1.05033 1.01504 1.65171 1.21964 0.83930 0.93015 1.04070 1.19258 0.90999 0.86863 0.97132 1.66580 1.33448 1.02821 1.21800 1.21461 0.95254 0.88834 0.88757 1.20947 0.94176 0.97621 1.03615 1.19647 0.93096 0.96018 1.08829 1.20669 1.07379 0.90875 0.93116 1.21131 0.75971 0.81648 0.92065 1.90652 1.52863 1.55969 1.48247 1.48013 1.69706 1.06939 1.08077 1.21894 1.02549 0.93659 0.88395 1.18838 0.94345 0.92789 0.80782 0.95743 1.22252 0.97207 0.99542 1.01493 1.22268 1.03541 1.42453 0.96378 0.94225 1.26548 0.96325 0.94028 1.03089 1.70953 1.30807 1.20566 1.33681 0.83816 0.77657 0.75784 0.74327 1.20753 1.21302 1.17306 1.19647 0.97496 0.89916 0.88910 1.21123 0.90795 1.01514 1.04780 1.20443 0.93909 0.94907 1.16918 0.87350 0.89153 0.88823 0.89953 0.89396 0.88169 0.90733 0.89029 0.87507 0.85672 0.84488 0.90555 0.88792 0.92503 0.92020 0.93468 0.93564 0.93046 0.86744 0.89542 0.91853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.29 9.89 71.24 0.70 -0.59 16 2 C 0.11 2.96 7.44 44.77 0.33 3.29 16 3 N -0.27 -7.66 12.40 -43.75 -0.54 -8.20 16 4 N -0.41 -11.77 4.04 -366.55 -1.48 -13.25 16 5 C 0.11 2.17 11.44 127.77 1.46 3.64 16 6 C 0.30 9.58 7.97 134.12 1.07 10.65 16 7 N -0.53 -16.88 10.30 -181.05 -1.86 -18.75 16 8 C 0.21 5.92 6.78 42.74 0.29 6.21 16 9 C -0.11 -2.29 9.74 71.23 0.69 -1.59 16 10 C -0.17 -4.85 4.35 -20.02 -0.09 -4.93 16 11 C -0.08 -1.95 3.30 29.10 0.10 -1.85 16 12 C 0.50 18.14 7.34 87.65 0.64 18.78 16 13 O -0.60 -27.66 15.36 -3.04 -0.05 -27.70 16 14 N -0.60 -22.28 2.75 -826.81 -2.28 -24.55 16 15 C 0.08 2.10 9.09 127.77 1.16 3.26 16 16 C 0.24 10.96 2.23 44.25 0.10 11.06 16 17 H 0.02 1.30 5.46 -2.39 -0.01 1.28 16 18 C -0.15 -5.96 9.03 71.98 0.65 -5.32 16 19 C -0.61 -32.79 8.30 25.60 0.21 -32.57 16 20 H 0.04 2.27 7.37 -2.91 -0.02 2.25 16 21 C 0.00 0.10 5.20 84.66 0.44 0.54 16 22 N -0.93 -55.52 13.70 21.45 0.29 -55.22 16 23 Si 1.06 51.31 26.44 68.60 1.81 53.13 16 24 H -0.28 -13.46 7.11 99.48 0.71 -12.76 16 25 H -0.29 -14.08 7.11 99.48 0.71 -13.37 16 26 H -0.25 -10.85 6.16 99.48 0.61 -10.24 16 27 C 0.05 1.42 5.91 -19.72 -0.12 1.30 16 28 C -0.13 -2.80 8.97 71.24 0.64 -2.16 16 29 C -0.25 -7.64 6.17 -20.23 -0.12 -7.77 16 30 H 0.11 1.27 8.14 -2.39 -0.02 1.25 16 31 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 32 H 0.09 1.44 5.66 -2.39 -0.01 1.42 16 33 H 0.08 1.33 8.14 -2.38 -0.02 1.31 16 34 H 0.09 1.70 8.14 -2.38 -0.02 1.68 16 35 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 36 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 37 H 0.09 1.68 8.14 -2.38 -0.02 1.66 16 38 H 0.11 1.65 5.88 -2.39 -0.01 1.64 16 39 H 0.13 2.40 5.94 -2.38 -0.01 2.39 16 40 H 0.14 2.29 5.86 -2.38 -0.01 2.28 16 41 H 0.08 1.62 8.14 -2.38 -0.02 1.60 16 42 H 0.09 1.82 6.44 -2.39 -0.02 1.81 16 43 H 0.06 1.85 6.91 -2.39 -0.02 1.83 16 44 H 0.06 2.28 7.44 -2.39 -0.02 2.27 16 45 H 0.05 2.03 5.51 -2.39 -0.01 2.02 16 46 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 47 H 0.26 15.53 8.73 -92.71 -0.81 14.72 16 48 H 0.11 1.74 8.14 -2.39 -0.02 1.72 16 49 H 0.09 1.78 5.38 -2.39 -0.01 1.77 16 50 H 0.06 1.62 6.30 -2.39 -0.02 1.61 16 Total: -1.00 -81.05 392.81 4.90 -76.15 By element: Atomic # 1 Polarization: 15.60 SS G_CDS: 0.84 Total: 16.44 kcal Atomic # 6 Polarization: -6.21 SS G_CDS: 8.16 Total: 1.95 kcal Atomic # 7 Polarization: -114.10 SS G_CDS: -5.87 Total: -119.97 kcal Atomic # 8 Polarization: -27.66 SS G_CDS: -0.05 Total: -27.70 kcal Atomic # 14 Polarization: 51.31 SS G_CDS: 1.81 Total: 53.13 kcal Total: -81.05 4.90 -76.15 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609143116.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.163 kcal (2) G-P(sol) polarization free energy of solvation -81.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.148 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds