Wall clock time and date at job start Wed Apr 1 2020 03:53:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46907 * 109.45959 * 2 1 4 4 C 1.47477 * 111.00082 * 208.61410 * 3 2 1 5 5 C 1.53512 * 87.93159 * 138.70314 * 4 3 2 6 6 C 1.47478 * 110.99965 * 304.58936 * 3 2 1 7 7 C 1.53044 * 109.46329 * 240.02959 * 2 1 3 8 8 C 1.53191 * 109.30975 * 301.34639 * 7 2 1 9 9 N 1.46922 * 108.77257 * 305.35835 * 8 7 2 10 10 C 1.34778 * 120.63107 * 233.58875 * 9 8 7 11 11 O 1.21575 * 120.00258 * 5.46949 * 10 9 8 12 12 N 1.34779 * 120.00059 * 185.47316 * 10 9 8 13 13 C 1.39246 * 119.99954 * 185.30505 * 12 10 9 14 14 C 1.39688 * 119.57321 * 174.81330 * 13 12 10 15 15 C 1.38643 * 119.49561 * 180.02562 * 14 13 12 16 16 C 1.38357 * 118.66827 * 0.02562 * 15 14 13 17 17 C 1.40568 * 119.13496 * 359.97438 * 16 15 14 18 18 C 1.41331 * 119.78791 * 180.28106 * 17 16 15 19 19 H 1.07999 * 120.00350 * 359.73197 * 18 17 16 20 20 C 1.40025 * 119.99787 * 179.72723 * 18 17 16 21 21 N 1.30742 * 120.00273 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 120.00200 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.47134 * 89.99913 * 22 20 18 24 24 H 1.48491 * 109.47388 * 210.00505 * 22 20 18 25 25 H 1.48500 * 109.46898 * 330.00171 * 22 20 18 26 26 N 1.31900 * 119.57586 * 354.83971 * 13 12 10 27 27 C 1.46923 * 118.73704 * 53.86588 * 9 8 7 28 28 C 1.53036 * 109.46530 * 119.96106 * 2 1 3 29 29 H 1.09007 * 109.46805 * 175.13352 * 1 2 3 30 30 H 1.08998 * 109.47252 * 295.13098 * 1 2 3 31 31 H 1.08999 * 109.47093 * 55.14164 * 1 2 3 32 32 H 1.08999 * 113.47304 * 253.47078 * 4 3 2 33 33 H 1.08994 * 113.47850 * 23.93867 * 4 3 2 34 34 H 1.08993 * 114.17451 * 220.32511 * 5 4 3 35 35 H 1.09004 * 114.17151 * 87.61882 * 5 4 3 36 36 H 1.09004 * 113.47244 * 336.05886 * 6 3 2 37 37 H 1.08998 * 113.47796 * 106.46445 * 6 3 2 38 38 H 1.09000 * 109.50139 * 181.39000 * 7 2 1 39 39 H 1.09001 * 109.49438 * 61.29476 * 7 2 1 40 40 H 1.09003 * 109.58456 * 185.57805 * 8 7 2 41 41 H 1.08997 * 109.70862 * 65.22343 * 8 7 2 42 42 H 0.97000 * 119.99668 * 5.30642 * 12 10 9 43 43 H 1.08000 * 120.25373 * 0.02562 * 14 13 12 44 44 H 1.07998 * 120.66673 * 180.02562 * 15 14 13 45 45 H 1.08000 * 120.42818 * 180.02562 * 16 15 14 46 46 H 0.97006 * 120.00560 * 179.97438 * 21 20 18 47 47 H 1.09000 * 109.58980 * 65.92838 * 27 9 8 48 48 H 1.09005 * 109.58598 * 186.34857 * 27 9 8 49 49 H 1.08990 * 109.50420 * 178.61169 * 28 2 1 50 50 H 1.09004 * 109.49571 * 298.67841 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0194 1.3852 0.0000 4 6 3.3351 1.4808 -0.6594 5 6 2.8450 2.7741 -1.3256 6 6 1.4585 2.1439 -1.1335 7 6 2.0399 -0.7208 -1.2500 8 6 1.4996 -2.1542 -1.2641 9 7 1.8626 -2.8088 0.0002 10 6 2.5158 -3.9877 0.0003 11 8 2.8979 -4.4711 -1.0478 12 7 2.7453 -4.6309 1.1623 13 6 3.5148 -5.7914 1.1755 14 6 3.8381 -6.3903 2.3953 15 6 4.6048 -7.5454 2.4067 16 6 5.0292 -8.0722 1.1998 17 6 4.6708 -7.4228 0.0057 18 6 5.0918 -7.9523 -1.2352 19 1 5.6906 -8.8506 -1.2638 20 6 4.7324 -7.3123 -2.4276 21 7 4.0079 -6.2245 -2.3931 22 14 5.2883 -8.0124 -4.0678 23 1 4.2707 -8.9720 -4.5668 24 1 5.4505 -6.9086 -5.0478 25 1 6.5856 -8.7134 -3.8926 26 7 3.9294 -6.3106 0.0361 27 6 1.4947 -2.1567 1.2643 28 6 2.0399 -0.7206 1.2501 29 1 -0.3633 -1.0240 -0.0872 30 1 -0.3633 0.4364 0.9304 31 1 -0.3633 0.5874 -0.8433 32 1 4.1593 1.6363 0.0368 33 1 3.5262 0.6737 -1.3664 34 1 3.1461 2.8813 -2.3676 35 1 3.0126 3.6731 -0.7323 36 1 1.1488 1.5135 -1.9671 37 1 0.6916 2.8604 -0.8393 38 1 3.1296 -0.7429 -1.2383 39 1 1.6958 -0.1936 -2.1398 40 1 1.9383 -2.7019 -2.0982 41 1 0.4148 -2.1371 -1.3684 42 1 2.3743 -4.2854 1.9893 43 1 3.4935 -5.9569 3.3226 44 1 4.8656 -8.0243 3.3389 45 1 5.6274 -8.9711 1.1755 46 1 3.7592 -5.7809 -3.2191 47 1 0.4094 -2.1376 1.3633 48 1 1.9301 -2.7061 2.0991 49 1 3.1295 -0.7426 1.2384 50 1 1.6962 -0.1929 2.1398 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000881142120.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:53:11 Heat of formation + Delta-G solvation = 99.874024 kcal Electronic energy + Delta-G solvation = -31464.251515 eV Core-core repulsion = 27494.765739 eV Total energy + Delta-G solvation = -3969.485777 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.37523 -39.61389 -38.01134 -36.62084 -34.15293 -33.24105 -32.92055 -31.09279 -30.25379 -29.07787 -28.24145 -27.77684 -25.65856 -25.42963 -23.71530 -23.60074 -21.75963 -21.16997 -20.57761 -19.26813 -18.34761 -17.78007 -17.19314 -16.28912 -16.21157 -15.84180 -15.19561 -15.04063 -14.68881 -14.64314 -14.45166 -14.33920 -13.72372 -13.67189 -13.33100 -13.11062 -12.81344 -12.81134 -12.40357 -12.33440 -12.02366 -11.98433 -11.91938 -11.69896 -11.48241 -11.14856 -11.09225 -10.97664 -10.92261 -10.86540 -10.67777 -10.61494 -10.42984 -10.31470 -9.89395 -9.66106 -9.06843 -8.99211 -8.84971 -8.12540 -7.91431 -7.17791 -6.90704 -6.07840 -4.35714 2.87064 3.13719 3.16159 3.19104 3.21607 3.30157 3.75831 4.09450 4.17879 4.26924 4.36301 4.52169 4.56959 4.71588 4.83960 4.98739 5.01368 5.03510 5.11637 5.20287 5.28493 5.38456 5.41508 5.50988 5.55685 5.59354 5.64341 5.72498 5.79381 5.84101 5.86721 5.93050 5.99454 6.05804 6.08636 6.12086 6.16092 6.38684 6.50125 6.59904 6.82599 6.88406 6.91054 6.98462 7.24771 7.38964 7.65125 7.75943 7.84951 8.19825 8.31221 8.65378 8.82407 9.09766 9.59997 10.30612 10.53037 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.013429 B = 0.003224 C = 0.002788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2084.594711 B = 8683.263272 C =10040.509506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.077 3.923 3 N -0.463 5.463 4 C -0.020 4.020 5 C -0.148 4.148 6 C -0.004 4.004 7 C -0.161 4.161 8 C 0.139 3.861 9 N -0.639 5.639 10 C 0.669 3.331 11 O -0.460 6.460 12 N -0.673 5.673 13 C 0.386 3.614 14 C -0.358 4.358 15 C -0.036 4.036 16 C -0.307 4.307 17 C 0.271 3.729 18 C -0.425 4.425 19 H 0.082 0.918 20 C 0.057 3.943 21 N -0.649 5.649 22 Si 0.894 3.106 23 H -0.272 1.272 24 H -0.279 1.279 25 H -0.264 1.264 26 N -0.471 5.471 27 C 0.113 3.887 28 C -0.110 4.110 29 H 0.068 0.932 30 H 0.061 0.939 31 H 0.055 0.945 32 H 0.080 0.920 33 H 0.090 0.910 34 H 0.073 0.927 35 H 0.088 0.912 36 H 0.072 0.928 37 H 0.080 0.920 38 H 0.080 0.920 39 H 0.071 0.929 40 H 0.096 0.904 41 H 0.058 0.942 42 H 0.394 0.606 43 H 0.089 0.911 44 H 0.095 0.905 45 H 0.096 0.904 46 H 0.271 0.729 47 H 0.064 0.936 48 H 0.075 0.925 49 H 0.066 0.934 50 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.323 16.851 2.526 18.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.013 4.013 3 N -0.185 5.185 4 C -0.149 4.149 5 C -0.186 4.186 6 C -0.133 4.133 7 C -0.201 4.201 8 C 0.015 3.985 9 N -0.382 5.382 10 C 0.369 3.631 11 O -0.324 6.324 12 N -0.323 5.323 13 C 0.147 3.853 14 C -0.384 4.384 15 C -0.060 4.060 16 C -0.330 4.330 17 C 0.146 3.854 18 C -0.456 4.456 19 H 0.100 0.900 20 C -0.172 4.172 21 N -0.267 5.267 22 Si 0.718 3.282 23 H -0.197 1.197 24 H -0.204 1.204 25 H -0.188 1.188 26 N -0.190 5.190 27 C -0.012 4.012 28 C -0.149 4.149 29 H 0.087 0.913 30 H 0.080 0.920 31 H 0.074 0.926 32 H 0.099 0.901 33 H 0.108 0.892 34 H 0.091 0.909 35 H 0.107 0.893 36 H 0.090 0.910 37 H 0.099 0.901 38 H 0.098 0.902 39 H 0.090 0.910 40 H 0.114 0.886 41 H 0.076 0.924 42 H 0.229 0.771 43 H 0.108 0.892 44 H 0.114 0.886 45 H 0.114 0.886 46 H 0.083 0.917 47 H 0.082 0.918 48 H 0.094 0.906 49 H 0.084 0.916 50 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -7.445 17.250 1.429 18.842 hybrid contribution 0.287 -0.768 -0.038 0.821 sum -7.157 16.482 1.391 18.023 Atomic orbital electron populations 1.22008 0.93655 1.02474 1.02182 1.21445 0.95572 0.89130 0.95149 1.69197 1.03799 1.10481 1.34996 1.24145 0.94431 0.97867 0.98447 1.23093 0.96518 0.97967 1.01036 1.23752 0.97746 0.97677 0.94097 1.22693 1.02169 0.97084 0.98122 1.21232 0.98618 0.91299 0.87379 1.47474 1.62993 1.21826 1.05891 1.16357 0.80568 0.80595 0.85579 1.91371 1.49354 1.63579 1.28097 1.42753 1.54451 1.26217 1.08883 1.18362 0.90331 0.85633 0.91009 1.20430 1.18115 1.04906 0.94992 1.20540 0.94939 0.94088 0.96420 1.21617 1.12914 1.04938 0.93555 1.18392 0.87763 0.87124 0.92106 1.19565 1.27653 1.08920 0.89467 0.90026 1.26185 0.95403 0.95141 1.00504 1.70354 1.18574 1.09813 1.27994 0.86552 0.79987 0.79379 0.82237 1.19707 1.20398 1.18799 1.68697 1.15679 1.12511 1.22104 1.21651 0.99541 0.92934 0.87049 1.21865 1.01197 0.94647 0.97220 0.91310 0.92000 0.92620 0.90139 0.89242 0.90874 0.89299 0.90988 0.90148 0.90212 0.91013 0.88607 0.92392 0.77081 0.89244 0.88648 0.88620 0.91734 0.91775 0.90629 0.91555 0.90499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 7.61 37.16 0.28 -1.03 16 2 C 0.08 0.78 0.49 -131.56 -0.06 0.72 16 3 N -0.46 -4.62 6.16 -228.84 -1.41 -6.03 16 4 C -0.02 -0.20 7.32 -7.54 -0.06 -0.25 16 5 C -0.15 -1.16 8.47 -26.20 -0.22 -1.38 16 6 C 0.00 -0.03 6.15 -7.54 -0.05 -0.08 16 7 C -0.16 -1.81 3.52 -26.61 -0.09 -1.91 16 8 C 0.14 1.91 5.97 -3.71 -0.02 1.88 16 9 N -0.64 -9.86 2.97 -178.24 -0.53 -10.39 16 10 C 0.67 14.03 8.26 -86.91 -0.72 13.31 16 11 O -0.46 -11.83 11.52 5.30 0.06 -11.77 16 12 N -0.67 -13.78 5.25 -15.78 -0.08 -13.86 16 13 C 0.39 9.64 7.43 -155.00 -1.15 8.49 16 14 C -0.36 -8.20 9.95 -38.89 -0.39 -8.59 16 15 C -0.04 -0.82 10.15 -39.39 -0.40 -1.22 16 16 C -0.31 -7.86 9.83 -38.66 -0.38 -8.24 16 17 C 0.27 7.75 6.55 -85.00 -0.56 7.19 16 18 C -0.43 -11.87 9.14 -37.74 -0.34 -12.22 16 19 H 0.08 2.13 7.85 -52.49 -0.41 1.72 16 20 C 0.06 1.52 5.50 -17.35 -0.10 1.43 16 21 N -0.65 -18.21 8.98 55.55 0.50 -17.71 16 22 Si 0.89 19.47 29.56 -169.99 -5.02 14.44 16 23 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 24 H -0.28 -5.98 7.11 56.52 0.40 -5.57 16 25 H -0.26 -5.64 7.11 56.52 0.40 -5.23 16 26 N -0.47 -13.48 5.74 -10.26 -0.06 -13.54 16 27 C 0.11 1.32 5.91 -3.49 -0.02 1.30 16 28 C -0.11 -1.20 5.20 -26.39 -0.14 -1.34 16 29 H 0.07 0.64 4.98 -51.93 -0.26 0.38 16 30 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.05 0.46 6.60 -51.93 -0.34 0.12 16 32 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 33 H 0.09 0.91 4.67 -51.93 -0.24 0.67 16 34 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 35 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 36 H 0.07 0.58 5.63 -51.93 -0.29 0.29 16 37 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.08 1.03 5.98 -51.93 -0.31 0.72 16 39 H 0.07 0.71 6.29 -51.93 -0.33 0.38 16 40 H 0.10 1.59 7.00 -51.93 -0.36 1.22 16 41 H 0.06 0.70 6.59 -51.93 -0.34 0.36 16 42 H 0.39 6.41 6.29 -40.82 -0.26 6.15 16 43 H 0.09 1.75 8.06 -52.49 -0.42 1.33 16 44 H 0.10 1.87 8.06 -52.49 -0.42 1.44 16 45 H 0.10 2.27 8.06 -52.49 -0.42 1.85 16 46 H 0.27 7.13 8.29 -40.82 -0.34 6.79 16 47 H 0.06 0.65 6.80 -51.93 -0.35 0.30 16 48 H 0.08 0.85 5.74 -51.93 -0.30 0.55 16 49 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 50 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 372.81 15.07 5.62 5.62 Total: -1.00 -32.88 372.81 -12.50 -45.38 By element: Atomic # 1 Polarization: 16.96 SS G_CDS: -7.16 Total: 9.80 kcal Atomic # 6 Polarization: 2.47 SS G_CDS: -4.41 Total: -1.94 kcal Atomic # 7 Polarization: -59.94 SS G_CDS: -1.58 Total: -61.52 kcal Atomic # 8 Polarization: -11.83 SS G_CDS: 0.06 Total: -11.77 kcal Atomic # 14 Polarization: 19.47 SS G_CDS: -5.02 Total: 14.44 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -32.88 -12.50 -45.38 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881142120.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.254 kcal (2) G-P(sol) polarization free energy of solvation -32.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.380 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds