Wall clock time and date at job start Wed Apr 1 2020 02:57:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86799 * 120.00220 * 2 1 4 4 H 1.48496 * 109.47252 * 270.00473 * 3 2 1 5 5 H 1.48502 * 109.46753 * 30.00052 * 3 2 1 6 6 H 1.48503 * 109.47377 * 150.00054 * 3 2 1 7 7 C 1.37881 * 120.00159 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00125 * 187.84548 * 7 2 1 9 9 C 1.50703 * 119.99884 * 7.84186 * 7 2 1 10 10 C 1.52993 * 115.55197 * 273.95171 * 9 7 2 11 11 N 1.46500 * 109.47183 * 293.85904 * 10 9 7 12 12 C 1.34772 * 120.00446 * 183.35148 * 11 10 9 13 13 O 1.21284 * 119.99723 * 5.22307 * 12 11 10 14 14 C 1.50700 * 120.00530 * 185.22951 * 12 11 10 15 15 H 1.09001 * 109.47062 * 24.75334 * 14 12 11 16 16 C 1.52993 * 109.47656 * 144.75861 * 14 12 11 17 17 C 1.53001 * 109.47241 * 180.02562 * 16 14 12 18 18 C 1.52999 * 109.47064 * 299.99748 * 17 16 14 19 19 H 1.09001 * 109.46800 * 300.00140 * 18 17 16 20 20 N 1.46498 * 109.47178 * 180.02562 * 18 17 16 21 21 C 1.38998 * 120.00151 * 154.99976 * 20 18 17 22 22 C 1.39334 * 120.09548 * 359.72632 * 21 20 18 23 23 N 1.31921 * 119.89415 * 179.68533 * 22 21 20 24 24 C 1.32276 * 120.08164 * 0.61351 * 23 22 21 25 25 C 1.38157 * 120.19208 * 359.66007 * 24 23 22 26 26 N 1.32246 * 120.11379 * 0.02562 * 25 24 23 27 27 C 1.53002 * 109.47098 * 60.00037 * 18 17 16 28 28 C 1.53001 * 109.47133 * 299.99920 * 27 18 17 29 29 C 1.53003 * 117.49530 * 59.62084 * 9 7 2 30 30 C 1.53005 * 117.49717 * 128.27894 * 9 7 2 31 31 H 0.97002 * 120.00136 * 5.02794 * 1 2 3 32 32 H 1.08997 * 109.47470 * 173.86084 * 10 9 7 33 33 H 1.09003 * 109.47202 * 53.85467 * 10 9 7 34 34 H 0.97006 * 119.99929 * 3.34711 * 11 10 9 35 35 H 1.09001 * 109.47315 * 59.99628 * 16 14 12 36 36 H 1.09002 * 109.46809 * 299.99881 * 16 14 12 37 37 H 1.09003 * 109.46885 * 179.97438 * 17 16 14 38 38 H 1.09001 * 109.47431 * 60.00062 * 17 16 14 39 39 H 0.97001 * 119.99875 * 334.99939 * 20 18 17 40 40 H 1.08005 * 120.05432 * 359.97438 * 22 21 20 41 41 H 1.07996 * 119.90653 * 179.69018 * 24 23 22 42 42 H 1.08006 * 119.94658 * 180.02562 * 25 24 23 43 43 H 1.09001 * 109.46754 * 60.00080 * 27 18 17 44 44 H 1.09002 * 109.47021 * 180.02562 * 27 18 17 45 45 H 1.08998 * 109.46937 * 300.00300 * 28 27 18 46 46 H 1.08995 * 109.47036 * 179.97438 * 28 27 18 47 47 H 1.09000 * 117.49430 * 214.99972 * 29 9 7 48 48 H 1.08991 * 117.50122 * 0.02594 * 29 9 7 49 49 H 1.08997 * 117.49601 * 359.97438 * 30 9 7 50 50 H 1.08998 * 117.49677 * 144.97285 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0770 -1.1985 0.1271 9 6 1.2616 -2.4930 -0.1792 10 6 0.6916 -3.1086 1.1002 11 7 1.7914 -3.5178 1.9773 12 6 1.5282 -4.1498 3.1382 13 8 0.3894 -4.4643 3.4127 14 6 2.6486 -4.4656 4.0952 15 1 3.4716 -3.7695 3.9334 16 6 2.1437 -4.3331 5.5333 17 6 3.2815 -4.6532 6.5049 18 6 3.7694 -6.0834 6.2654 19 1 2.9467 -6.7798 6.4273 20 7 4.8585 -6.3900 7.1961 21 6 5.1193 -7.7085 7.5504 22 6 4.3426 -8.7397 7.0261 23 7 4.5976 -9.9901 7.3602 24 6 5.5812 -10.2643 8.2011 25 6 6.3499 -9.2442 8.7275 26 7 6.1050 -7.9884 8.3930 27 6 4.2744 -6.2159 4.8272 28 6 3.1366 -5.8959 3.8557 29 6 0.4601 -2.6767 -1.4695 30 6 1.7640 -3.4511 -1.2612 31 1 -0.4850 0.8368 -0.0736 32 1 0.0863 -3.9788 0.8464 33 1 0.0726 -2.3724 1.6131 34 1 2.7091 -3.3340 1.7224 35 1 1.3207 -5.0293 5.6951 36 1 1.7965 -3.3141 5.7040 37 1 2.9218 -4.5583 7.5295 38 1 4.1042 -3.9567 6.3431 39 1 5.3975 -5.6730 7.5650 40 1 3.5360 -8.5160 6.3435 41 1 5.7843 -11.2886 8.4766 42 1 7.1523 -9.4726 9.4135 43 1 5.0971 -5.5194 4.6654 44 1 4.6216 -7.2350 4.6565 45 1 2.3139 -6.5923 4.0176 46 1 3.4964 -5.9899 2.8312 47 1 -0.4733 -3.2361 -1.4067 48 1 0.4705 -1.8583 -2.1892 49 1 2.6315 -3.1417 -1.8440 50 1 1.6888 -4.5200 -1.0613 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000935781711.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:57:53 Heat of formation + Delta-G solvation = 19.342577 kcal Electronic energy + Delta-G solvation = -29527.843760 eV Core-core repulsion = 25554.865878 eV Total energy + Delta-G solvation = -3972.977882 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.30197 -39.94833 -38.31100 -36.74251 -35.46440 -34.11302 -33.31011 -32.02211 -31.26043 -30.88820 -29.04023 -26.43123 -25.34396 -25.01307 -23.93783 -22.91467 -22.36860 -21.24376 -20.44120 -19.68131 -19.18960 -18.11777 -17.69942 -16.98399 -16.77606 -16.08472 -15.86266 -15.41243 -15.12266 -14.89419 -14.80841 -14.59149 -14.40740 -13.99262 -13.92142 -13.45624 -13.17209 -12.99011 -12.88561 -12.59182 -12.45488 -11.95096 -11.76276 -11.67039 -11.62447 -11.55282 -11.43077 -11.35122 -11.13519 -10.91746 -10.81916 -10.58410 -10.56485 -10.31684 -10.24730 -9.70777 -9.34861 -9.24760 -8.98881 -8.52401 -8.30780 -8.19719 -8.12931 -6.14277 -4.22312 0.69363 1.03446 2.60124 3.13550 3.22093 3.30587 3.30951 3.54891 3.79804 4.10840 4.15736 4.23566 4.31554 4.35330 4.44435 4.71445 4.85985 4.92126 4.97042 4.98283 5.07931 5.14803 5.15861 5.22007 5.23857 5.27021 5.37479 5.55492 5.64161 5.68239 5.77364 5.91490 5.94278 5.99190 6.02012 6.12885 6.24082 6.29431 6.42553 6.43589 6.53527 6.64990 6.84585 7.04636 7.06663 7.24735 7.25074 7.38407 7.43399 7.68487 7.75840 8.26634 8.28779 8.78648 8.85136 9.45191 10.94335 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.019722 B = 0.002013 C = 0.001939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1419.410168 B =13909.085227 C =14435.648211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.872 5.872 2 C 0.073 3.927 3 Si 0.888 3.112 4 H -0.280 1.280 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.499 4.499 8 H 0.060 0.940 9 C 0.027 3.973 10 C 0.162 3.838 11 N -0.702 5.702 12 C 0.508 3.492 13 O -0.557 6.557 14 C -0.107 4.107 15 H 0.089 0.911 16 C -0.098 4.098 17 C -0.123 4.123 18 C 0.149 3.851 19 H 0.086 0.914 20 N -0.708 5.708 21 C 0.361 3.639 22 C -0.010 4.010 23 N -0.402 5.402 24 C -0.030 4.030 25 C 0.104 3.896 26 N -0.509 5.509 27 C -0.132 4.132 28 C -0.104 4.104 29 C -0.149 4.149 30 C -0.210 4.210 31 H 0.262 0.738 32 H 0.038 0.962 33 H 0.071 0.929 34 H 0.400 0.600 35 H 0.079 0.921 36 H 0.074 0.926 37 H 0.073 0.927 38 H 0.072 0.928 39 H 0.406 0.594 40 H 0.165 0.835 41 H 0.164 0.836 42 H 0.167 0.833 43 H 0.072 0.928 44 H 0.068 0.932 45 H 0.073 0.927 46 H 0.073 0.927 47 H 0.065 0.935 48 H 0.083 0.917 49 H 0.078 0.922 50 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.232 -14.536 14.653 23.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.508 5.508 2 C -0.131 4.131 3 Si 0.716 3.284 4 H -0.206 1.206 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.537 4.537 8 H 0.078 0.922 9 C 0.026 3.974 10 C 0.039 3.961 11 N -0.350 5.350 12 C 0.293 3.707 13 O -0.437 6.437 14 C -0.129 4.129 15 H 0.108 0.892 16 C -0.136 4.136 17 C -0.161 4.161 18 C 0.045 3.955 19 H 0.104 0.896 20 N -0.339 5.339 21 C 0.121 3.879 22 C -0.180 4.180 23 N -0.116 5.116 24 C -0.190 4.190 25 C -0.056 4.056 26 N -0.232 5.232 27 C -0.171 4.171 28 C -0.143 4.143 29 C -0.187 4.187 30 C -0.247 4.247 31 H 0.071 0.929 32 H 0.056 0.944 33 H 0.090 0.910 34 H 0.234 0.766 35 H 0.098 0.902 36 H 0.092 0.908 37 H 0.092 0.908 38 H 0.091 0.909 39 H 0.242 0.758 40 H 0.182 0.818 41 H 0.181 0.819 42 H 0.184 0.816 43 H 0.091 0.909 44 H 0.087 0.913 45 H 0.092 0.908 46 H 0.092 0.908 47 H 0.083 0.917 48 H 0.101 0.899 49 H 0.097 0.903 50 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 10.076 -14.581 14.780 23.078 hybrid contribution 1.135 1.440 -0.146 1.839 sum 11.211 -13.141 14.634 22.639 Atomic orbital electron populations 1.70018 1.05876 1.27043 1.47868 1.24975 0.94778 0.98956 0.94376 0.86662 0.79922 0.83677 0.78169 1.20628 1.21272 1.19853 1.20348 0.92922 0.88850 1.51564 0.92204 1.19052 0.98560 0.94052 0.85752 1.21012 0.87552 0.96549 0.90996 1.46052 1.11437 1.57328 1.20221 1.20419 0.89852 0.78090 0.82347 1.90651 1.22954 1.53856 1.76212 1.21335 0.97646 0.98615 0.95302 0.89225 1.21318 0.97375 1.03369 0.91546 1.21791 0.99314 0.94585 1.00382 1.21204 0.88269 0.97934 0.88140 0.89569 1.44693 1.36661 1.03424 1.49118 1.19427 0.90580 0.87450 0.90449 1.23195 1.02445 0.87932 1.04396 1.68231 1.14384 1.20245 1.08739 1.23320 0.95602 1.01218 0.98887 1.23443 0.98014 0.87588 0.96587 1.67977 1.17862 1.22292 1.15109 1.22036 0.98772 1.02483 0.93777 1.21428 0.98119 0.95098 0.99653 1.22492 0.92423 1.01003 1.02760 1.23017 0.98522 0.95666 1.07490 0.92853 0.94396 0.91047 0.76636 0.90240 0.90750 0.90809 0.90938 0.75776 0.81801 0.81905 0.81622 0.90949 0.91325 0.90819 0.90784 0.91656 0.89855 0.90350 0.91656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.75 12.93 55.43 0.72 -23.03 16 2 C 0.07 1.90 5.37 -17.82 -0.10 1.81 16 3 Si 0.89 20.09 29.55 -169.99 -5.02 15.06 16 4 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 5 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 6 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 7 C -0.50 -12.47 8.66 -34.44 -0.30 -12.76 16 8 H 0.06 1.46 7.83 -52.49 -0.41 1.05 16 9 C 0.03 0.61 1.38 -155.66 -0.21 0.39 16 10 C 0.16 3.56 5.51 -4.05 -0.02 3.54 16 11 N -0.70 -12.81 5.48 -60.30 -0.33 -13.14 16 12 C 0.51 8.63 6.82 -10.99 -0.07 8.56 16 13 O -0.56 -11.56 16.28 5.55 0.09 -11.47 16 14 C -0.11 -1.26 2.51 -91.77 -0.23 -1.49 16 15 H 0.09 0.95 8.13 -51.93 -0.42 0.52 16 16 C -0.10 -1.04 4.87 -26.73 -0.13 -1.17 16 17 C -0.12 -0.94 5.39 -26.73 -0.14 -1.09 16 18 C 0.15 1.13 2.15 -67.93 -0.15 0.98 16 19 H 0.09 0.66 6.46 -51.93 -0.34 0.33 16 20 N -0.71 -5.58 5.25 -53.82 -0.28 -5.87 16 21 C 0.36 3.48 7.65 -154.73 -1.18 2.30 16 22 C -0.01 -0.10 10.03 -17.11 -0.17 -0.27 16 23 N -0.40 -4.24 10.49 -12.88 -0.14 -4.37 16 24 C -0.03 -0.25 11.21 -17.39 -0.19 -0.44 16 25 C 0.10 0.81 11.21 -17.40 -0.20 0.62 16 26 N -0.51 -5.07 10.53 -12.24 -0.13 -5.20 16 27 C -0.13 -1.05 5.44 -26.73 -0.15 -1.19 16 28 C -0.10 -1.03 5.19 -26.73 -0.14 -1.16 16 29 C -0.15 -3.32 9.41 -26.69 -0.25 -3.57 16 30 C -0.21 -4.23 9.96 -26.69 -0.27 -4.50 16 31 H 0.26 6.86 8.32 -40.82 -0.34 6.52 16 32 H 0.04 0.84 8.07 -51.93 -0.42 0.42 16 33 H 0.07 1.82 8.14 -51.93 -0.42 1.39 16 34 H 0.40 6.64 8.37 -40.82 -0.34 6.30 16 35 H 0.08 0.93 7.86 -51.93 -0.41 0.52 16 36 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.41 2.92 8.73 -40.82 -0.36 2.56 16 40 H 0.16 1.40 6.14 -52.48 -0.32 1.08 16 41 H 0.16 0.84 8.06 -52.49 -0.42 0.41 16 42 H 0.17 0.71 8.06 -52.48 -0.42 0.29 16 43 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 44 H 0.07 0.55 7.73 -51.93 -0.40 0.15 16 45 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 46 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 47 H 0.06 1.39 8.14 -51.93 -0.42 0.97 16 48 H 0.08 1.98 8.14 -51.93 -0.42 1.56 16 49 H 0.08 1.55 8.14 -51.93 -0.42 1.13 16 50 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 LS Contribution 407.89 15.07 6.15 6.15 Total: -1.00 -30.78 407.89 -10.90 -41.68 By element: Atomic # 1 Polarization: 17.71 SS G_CDS: -8.05 Total: 9.66 kcal Atomic # 6 Polarization: -5.56 SS G_CDS: -3.90 Total: -9.46 kcal Atomic # 7 Polarization: -51.46 SS G_CDS: -0.16 Total: -51.62 kcal Atomic # 8 Polarization: -11.56 SS G_CDS: 0.09 Total: -11.47 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -5.02 Total: 15.06 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -30.78 -10.90 -41.68 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000935781711.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.019 kcal (2) G-P(sol) polarization free energy of solvation -30.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.676 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds