Wall clock time and date at job start Wed Apr 1 2020 02:57:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86799 * 120.00220 * 2 1 4 4 H 1.48496 * 109.47252 * 270.00473 * 3 2 1 5 5 H 1.48502 * 109.46753 * 30.00052 * 3 2 1 6 6 H 1.48503 * 109.47377 * 150.00054 * 3 2 1 7 7 C 1.37881 * 120.00159 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00125 * 187.84548 * 7 2 1 9 9 C 1.50703 * 119.99884 * 7.84186 * 7 2 1 10 10 C 1.52993 * 115.55197 * 273.95171 * 9 7 2 11 11 N 1.46500 * 109.47183 * 293.85904 * 10 9 7 12 12 C 1.34772 * 120.00446 * 183.35148 * 11 10 9 13 13 O 1.21284 * 119.99723 * 5.22307 * 12 11 10 14 14 C 1.50700 * 120.00530 * 185.22951 * 12 11 10 15 15 H 1.09001 * 109.47062 * 24.75334 * 14 12 11 16 16 C 1.52993 * 109.47656 * 144.75861 * 14 12 11 17 17 C 1.53001 * 109.47241 * 180.02562 * 16 14 12 18 18 C 1.52999 * 109.47064 * 299.99748 * 17 16 14 19 19 H 1.09001 * 109.46800 * 300.00140 * 18 17 16 20 20 N 1.46498 * 109.47178 * 180.02562 * 18 17 16 21 21 C 1.38998 * 120.00151 * 154.99976 * 20 18 17 22 22 C 1.39334 * 120.09548 * 359.72632 * 21 20 18 23 23 N 1.31921 * 119.89415 * 179.68533 * 22 21 20 24 24 C 1.32276 * 120.08164 * 0.61351 * 23 22 21 25 25 C 1.38157 * 120.19208 * 359.66007 * 24 23 22 26 26 N 1.32246 * 120.11379 * 0.02562 * 25 24 23 27 27 C 1.53002 * 109.47098 * 60.00037 * 18 17 16 28 28 C 1.53001 * 109.47133 * 299.99920 * 27 18 17 29 29 C 1.53003 * 117.49530 * 59.62084 * 9 7 2 30 30 C 1.53005 * 117.49717 * 128.27894 * 9 7 2 31 31 H 0.97002 * 120.00136 * 5.02794 * 1 2 3 32 32 H 1.08997 * 109.47470 * 173.86084 * 10 9 7 33 33 H 1.09003 * 109.47202 * 53.85467 * 10 9 7 34 34 H 0.97006 * 119.99929 * 3.34711 * 11 10 9 35 35 H 1.09001 * 109.47315 * 59.99628 * 16 14 12 36 36 H 1.09002 * 109.46809 * 299.99881 * 16 14 12 37 37 H 1.09003 * 109.46885 * 179.97438 * 17 16 14 38 38 H 1.09001 * 109.47431 * 60.00062 * 17 16 14 39 39 H 0.97001 * 119.99875 * 334.99939 * 20 18 17 40 40 H 1.08005 * 120.05432 * 359.97438 * 22 21 20 41 41 H 1.07996 * 119.90653 * 179.69018 * 24 23 22 42 42 H 1.08006 * 119.94658 * 180.02562 * 25 24 23 43 43 H 1.09001 * 109.46754 * 60.00080 * 27 18 17 44 44 H 1.09002 * 109.47021 * 180.02562 * 27 18 17 45 45 H 1.08998 * 109.46937 * 300.00300 * 28 27 18 46 46 H 1.08995 * 109.47036 * 179.97438 * 28 27 18 47 47 H 1.09000 * 117.49430 * 214.99972 * 29 9 7 48 48 H 1.08991 * 117.50122 * 0.02594 * 29 9 7 49 49 H 1.08997 * 117.49601 * 359.97438 * 30 9 7 50 50 H 1.08998 * 117.49677 * 144.97285 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0770 -1.1985 0.1271 9 6 1.2616 -2.4930 -0.1792 10 6 0.6916 -3.1086 1.1002 11 7 1.7914 -3.5178 1.9773 12 6 1.5282 -4.1498 3.1382 13 8 0.3894 -4.4643 3.4127 14 6 2.6486 -4.4656 4.0952 15 1 3.4716 -3.7695 3.9334 16 6 2.1437 -4.3331 5.5333 17 6 3.2815 -4.6532 6.5049 18 6 3.7694 -6.0834 6.2654 19 1 2.9467 -6.7798 6.4273 20 7 4.8585 -6.3900 7.1961 21 6 5.1193 -7.7085 7.5504 22 6 4.3426 -8.7397 7.0261 23 7 4.5976 -9.9901 7.3602 24 6 5.5812 -10.2643 8.2011 25 6 6.3499 -9.2442 8.7275 26 7 6.1050 -7.9884 8.3930 27 6 4.2744 -6.2159 4.8272 28 6 3.1366 -5.8959 3.8557 29 6 0.4601 -2.6767 -1.4695 30 6 1.7640 -3.4511 -1.2612 31 1 -0.4850 0.8368 -0.0736 32 1 0.0863 -3.9788 0.8464 33 1 0.0726 -2.3724 1.6131 34 1 2.7091 -3.3340 1.7224 35 1 1.3207 -5.0293 5.6951 36 1 1.7965 -3.3141 5.7040 37 1 2.9218 -4.5583 7.5295 38 1 4.1042 -3.9567 6.3431 39 1 5.3975 -5.6730 7.5650 40 1 3.5360 -8.5160 6.3435 41 1 5.7843 -11.2886 8.4766 42 1 7.1523 -9.4726 9.4135 43 1 5.0971 -5.5194 4.6654 44 1 4.6216 -7.2350 4.6565 45 1 2.3139 -6.5923 4.0176 46 1 3.4964 -5.9899 2.8312 47 1 -0.4733 -3.2361 -1.4067 48 1 0.4705 -1.8583 -2.1892 49 1 2.6315 -3.1417 -1.8440 50 1 1.6888 -4.5200 -1.0613 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000935781711.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:57:52 Heat of formation + Delta-G solvation = 0.131315 kcal Electronic energy + Delta-G solvation = -29528.676823 eV Core-core repulsion = 25554.865878 eV Total energy + Delta-G solvation = -3973.810945 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.94957 -41.10644 -39.37878 -38.39011 -36.26148 -34.92036 -34.78832 -33.96446 -32.01194 -31.64713 -29.83613 -28.07529 -27.10497 -25.71212 -24.74666 -23.66892 -23.25371 -22.91955 -21.38432 -21.27403 -20.58031 -18.78528 -18.41641 -18.33293 -17.72888 -17.45294 -16.86223 -16.66793 -16.27336 -16.15455 -15.90334 -15.55423 -15.52234 -15.14076 -15.01889 -14.69168 -14.44599 -14.01537 -13.80359 -13.68577 -13.48153 -13.37446 -13.19916 -13.01640 -12.76238 -12.53312 -12.46019 -12.44675 -12.37179 -12.20780 -12.10198 -12.04908 -11.59583 -11.48991 -11.33141 -10.94617 -10.81822 -10.71549 -10.44803 -10.01646 -9.99262 -9.80681 -8.81389 -8.11284 -6.23534 0.07383 0.37657 1.42872 1.45492 1.53097 1.76204 1.97216 2.40396 2.46066 2.91315 3.18285 3.47980 3.52831 3.55851 3.60387 3.68961 3.69905 3.83812 4.03985 4.17978 4.23510 4.29875 4.34957 4.38796 4.40797 4.47322 4.52181 4.55671 4.64795 4.65022 4.73717 4.75186 4.82907 4.95962 4.98964 5.04968 5.09145 5.15886 5.19959 5.26496 5.31503 5.37924 5.46900 5.58170 5.60478 5.70585 5.78315 5.81425 6.36287 6.46422 6.63665 6.81084 6.86316 7.05992 7.43389 7.46735 8.97202 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.019722 B = 0.002013 C = 0.001939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1419.410168 B =13909.085227 C =14435.648211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.023 3.977 3 Si 0.948 3.052 4 H -0.279 1.279 5 H -0.294 1.294 6 H -0.262 1.262 7 C -0.501 4.501 8 H 0.065 0.935 9 C 0.005 3.995 10 C 0.178 3.822 11 N -0.700 5.700 12 C 0.505 3.495 13 O -0.598 6.598 14 C -0.097 4.097 15 H 0.110 0.890 16 C -0.096 4.096 17 C -0.111 4.111 18 C 0.154 3.846 19 H 0.084 0.916 20 N -0.701 5.701 21 C 0.352 3.648 22 C -0.027 4.027 23 N -0.430 5.430 24 C -0.035 4.035 25 C 0.106 3.894 26 N -0.529 5.529 27 C -0.121 4.121 28 C -0.099 4.099 29 C -0.162 4.162 30 C -0.175 4.175 31 H 0.258 0.742 32 H 0.032 0.968 33 H 0.027 0.973 34 H 0.410 0.590 35 H 0.064 0.936 36 H 0.062 0.938 37 H 0.082 0.918 38 H 0.087 0.913 39 H 0.411 0.589 40 H 0.169 0.831 41 H 0.191 0.809 42 H 0.201 0.799 43 H 0.081 0.919 44 H 0.070 0.930 45 H 0.064 0.936 46 H 0.077 0.923 47 H 0.068 0.932 48 H 0.063 0.937 49 H 0.087 0.913 50 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.233 -15.427 15.699 26.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.177 4.177 3 Si 0.774 3.226 4 H -0.205 1.205 5 H -0.220 1.220 6 H -0.186 1.186 7 C -0.538 4.538 8 H 0.084 0.916 9 C 0.004 3.996 10 C 0.054 3.946 11 N -0.349 5.349 12 C 0.292 3.708 13 O -0.480 6.480 14 C -0.118 4.118 15 H 0.128 0.872 16 C -0.134 4.134 17 C -0.149 4.149 18 C 0.049 3.951 19 H 0.102 0.898 20 N -0.332 5.332 21 C 0.112 3.888 22 C -0.195 4.195 23 N -0.144 5.144 24 C -0.195 4.195 25 C -0.055 4.055 26 N -0.252 5.252 27 C -0.160 4.160 28 C -0.137 4.137 29 C -0.200 4.200 30 C -0.212 4.212 31 H 0.067 0.933 32 H 0.050 0.950 33 H 0.046 0.954 34 H 0.246 0.754 35 H 0.083 0.917 36 H 0.081 0.919 37 H 0.100 0.900 38 H 0.105 0.895 39 H 0.248 0.752 40 H 0.186 0.814 41 H 0.208 0.792 42 H 0.217 0.783 43 H 0.100 0.900 44 H 0.089 0.911 45 H 0.082 0.918 46 H 0.095 0.905 47 H 0.087 0.913 48 H 0.082 0.918 49 H 0.106 0.894 50 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 13.117 -15.466 15.821 25.721 hybrid contribution 0.191 1.632 -0.438 1.701 sum 13.308 -13.834 15.383 24.599 Atomic orbital electron populations 1.70148 1.07294 1.27411 1.49633 1.25704 0.95405 1.02094 0.94530 0.85712 0.78989 0.79859 0.78023 1.20468 1.22010 1.18594 1.20669 0.93248 0.89679 1.50233 0.91645 1.19090 0.99563 0.94630 0.86304 1.20534 0.88154 0.94982 0.90935 1.45967 1.10941 1.57564 1.20410 1.21392 0.90680 0.76519 0.82168 1.90631 1.25217 1.55271 1.76887 1.21368 0.95928 1.00357 0.94149 0.87200 1.21280 0.98189 1.02345 0.91609 1.21675 0.98491 0.94904 0.99811 1.21117 0.88216 0.97759 0.87984 0.89823 1.44585 1.36576 1.03067 1.48952 1.19511 0.90717 0.87882 0.90664 1.23283 1.03026 0.88071 1.05115 1.68217 1.15607 1.20730 1.09850 1.23830 0.94833 1.02761 0.98058 1.24024 0.98340 0.86792 0.96316 1.68031 1.18205 1.23463 1.15549 1.21935 0.98009 1.02828 0.93228 1.21386 0.98505 0.93309 1.00516 1.22436 0.93905 1.01336 1.02371 1.22997 0.97208 0.96267 1.04703 0.93286 0.94973 0.95410 0.75440 0.91714 0.91912 0.89967 0.89452 0.75220 0.81423 0.79230 0.78266 0.89996 0.91111 0.91757 0.90471 0.91312 0.91812 0.89442 0.89420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.70 12.93 21.45 0.28 -50.42 16 2 C 0.02 1.21 5.37 84.66 0.45 1.67 16 3 Si 0.95 41.23 29.55 68.60 2.03 43.26 16 4 H -0.28 -11.97 7.11 99.48 0.71 -11.27 16 5 H -0.29 -13.01 7.11 99.48 0.71 -12.31 16 6 H -0.26 -10.78 7.11 99.48 0.71 -10.07 16 7 C -0.50 -24.81 8.66 25.60 0.22 -24.59 16 8 H 0.07 3.10 7.83 -2.91 -0.02 3.08 16 9 C 0.00 0.22 1.38 -52.93 -0.07 0.15 16 10 C 0.18 8.03 5.51 86.38 0.48 8.50 16 11 N -0.70 -25.38 5.48 -463.07 -2.54 -27.92 16 12 C 0.50 17.17 6.82 87.66 0.60 17.76 16 13 O -0.60 -25.51 16.28 -3.04 -0.05 -25.56 16 14 C -0.10 -2.15 2.51 -11.54 -0.03 -2.17 16 15 H 0.11 2.03 8.13 -2.39 -0.02 2.01 16 16 C -0.10 -1.95 4.87 30.59 0.15 -1.80 16 17 C -0.11 -1.47 5.39 30.59 0.16 -1.31 16 18 C 0.15 2.04 2.15 44.99 0.10 2.14 16 19 H 0.08 1.19 6.46 -2.39 -0.02 1.18 16 20 N -0.70 -9.67 5.25 -324.18 -1.70 -11.37 16 21 C 0.35 6.26 7.65 133.04 1.02 7.27 16 22 C -0.03 -0.50 10.03 84.94 0.85 0.35 16 23 N -0.43 -8.59 10.49 -194.67 -2.04 -10.63 16 24 C -0.03 -0.50 11.21 84.61 0.95 0.45 16 25 C 0.11 1.40 11.21 84.61 0.95 2.35 16 26 N -0.53 -9.53 10.53 -192.64 -2.03 -11.55 16 27 C -0.12 -1.65 5.44 30.60 0.17 -1.49 16 28 C -0.10 -1.78 5.19 30.60 0.16 -1.62 16 29 C -0.16 -7.29 9.41 30.62 0.29 -7.00 16 30 C -0.17 -6.75 9.96 30.62 0.30 -6.45 16 31 H 0.26 13.95 8.32 -92.71 -0.77 13.18 16 32 H 0.03 1.45 8.07 -2.39 -0.02 1.44 16 33 H 0.03 1.48 8.14 -2.39 -0.02 1.46 16 34 H 0.41 13.08 8.37 -92.70 -0.78 12.31 16 35 H 0.06 1.52 7.86 -2.39 -0.02 1.50 16 36 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 37 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 38 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 39 H 0.41 4.94 8.73 -92.71 -0.81 4.13 16 40 H 0.17 2.78 6.14 -2.91 -0.02 2.76 16 41 H 0.19 1.46 8.06 -2.91 -0.02 1.43 16 42 H 0.20 1.05 8.06 -2.91 -0.02 1.03 16 43 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 44 H 0.07 0.99 7.73 -2.39 -0.02 0.98 16 45 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 46 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 47 H 0.07 2.98 8.14 -2.39 -0.02 2.96 16 48 H 0.06 3.08 8.14 -2.39 -0.02 3.06 16 49 H 0.09 3.24 8.14 -2.39 -0.02 3.22 16 50 H 0.09 3.01 8.14 -2.39 -0.02 2.99 16 Total: -1.00 -68.02 407.89 0.06 -67.96 By element: Atomic # 1 Polarization: 32.67 SS G_CDS: -0.63 Total: 32.04 kcal Atomic # 6 Polarization: -12.54 SS G_CDS: 6.74 Total: -5.79 kcal Atomic # 7 Polarization: -103.87 SS G_CDS: -8.03 Total: -111.91 kcal Atomic # 8 Polarization: -25.51 SS G_CDS: -0.05 Total: -25.56 kcal Atomic # 14 Polarization: 41.23 SS G_CDS: 2.03 Total: 43.26 kcal Total: -68.02 0.06 -67.96 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000935781711.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.092 kcal (2) G-P(sol) polarization free energy of solvation -68.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.961 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds