Wall clock time and date at job start Wed Apr 1 2020 03:53:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38622 * 120.75878 * 2 1 4 4 C 1.38555 * 119.35567 * 180.02562 * 3 2 1 5 5 C 1.50694 * 119.55219 * 179.97438 * 4 3 2 6 6 N 1.31530 * 120.90269 * 359.73647 * 4 3 2 7 7 C 1.32720 * 121.63634 * 0.53058 * 6 4 3 8 8 C 1.48170 * 119.72044 * 179.75331 * 7 6 4 9 9 O 1.21511 * 119.99959 * 200.41060 * 8 7 6 10 10 N 1.34780 * 120.00039 * 20.41032 * 8 7 6 11 11 C 1.47075 * 120.88389 * 179.33282 * 10 8 7 12 12 C 1.53238 * 108.52153 * 231.20448 * 11 10 8 13 13 N 1.46900 * 109.34121 * 306.16746 * 12 11 10 14 14 C 1.46898 * 110.99942 * 187.25319 * 13 12 11 15 15 C 1.53952 * 113.73902 * 273.73834 * 14 13 12 16 16 N 1.47821 * 86.03398 * 222.08726 * 15 14 13 17 17 C 1.36935 * 134.45323 * 204.64843 * 16 15 14 18 18 H 1.08002 * 120.00029 * 179.87009 * 17 16 15 19 19 C 1.38810 * 120.00096 * 359.86285 * 17 16 15 20 20 N 1.31619 * 120.00057 * 0.02562 * 19 17 16 21 21 Si 1.86808 * 119.99961 * 179.97438 * 19 17 16 22 22 H 1.48505 * 109.46792 * 90.00328 * 21 19 17 23 23 H 1.48496 * 109.47375 * 210.00290 * 21 19 17 24 24 H 1.48492 * 109.47083 * 330.00788 * 21 19 17 25 25 C 1.47580 * 91.05267 * 24.55211 * 16 15 14 26 26 C 1.46901 * 111.26655 * 63.10132 * 13 12 11 27 27 C 1.47084 * 120.87808 * 359.34957 * 10 8 7 28 28 C 1.38589 * 120.75185 * 180.02562 * 2 1 3 29 29 H 1.09001 * 109.47129 * 269.98646 * 1 2 3 30 30 H 1.08999 * 109.46660 * 29.98410 * 1 2 3 31 31 H 1.08999 * 109.47099 * 149.98517 * 1 2 3 32 32 H 1.08004 * 120.32369 * 0.03770 * 3 2 1 33 33 H 1.08998 * 109.47508 * 90.00029 * 5 4 3 34 34 H 1.09004 * 109.47700 * 209.99867 * 5 4 3 35 35 H 1.09002 * 109.47321 * 330.00069 * 5 4 3 36 36 H 1.08999 * 109.63008 * 111.49259 * 11 10 8 37 37 H 1.09003 * 109.62790 * 350.90892 * 11 10 8 38 38 H 1.08999 * 109.49674 * 186.20604 * 12 11 10 39 39 H 1.09000 * 109.49568 * 66.13044 * 12 11 10 40 40 H 1.08991 * 112.94528 * 45.33638 * 14 13 12 41 41 H 1.08989 * 113.77332 * 336.35227 * 15 14 13 42 42 H 1.09002 * 113.76705 * 107.75412 * 15 14 13 43 43 H 0.97000 * 119.99810 * 179.97438 * 20 19 17 44 44 H 1.09002 * 113.76947 * 221.15349 * 25 16 15 45 45 H 1.08997 * 113.87044 * 89.76003 * 25 16 15 46 46 H 1.09003 * 109.49250 * 56.85986 * 26 13 12 47 47 H 1.08998 * 109.48935 * 176.93624 * 26 13 12 48 48 H 1.08999 * 109.62751 * 248.50050 * 27 10 8 49 49 H 1.08995 * 109.63047 * 9.08692 * 27 10 8 50 50 H 1.08000 * 120.47634 * 0.02562 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2160 1.1912 0.0000 4 6 3.6011 1.1573 -0.0005 5 6 4.3762 2.4496 -0.0011 6 7 4.2488 0.0125 0.0041 7 6 3.6081 -1.1498 -0.0009 8 6 4.3805 -2.4143 -0.0009 9 8 3.8569 -3.4460 -0.3722 10 7 5.6638 -2.4201 0.4110 11 6 6.4440 -3.6666 0.4329 12 6 7.0817 -3.8176 1.8181 13 7 7.8430 -2.6027 2.1382 14 6 8.6094 -2.7736 3.3797 15 6 7.8092 -2.4428 4.6526 16 7 9.0362 -1.7671 5.1248 17 6 9.5469 -1.4576 6.3570 18 1 10.4948 -0.9459 6.4358 19 6 8.8463 -1.8013 7.5050 20 7 7.6914 -2.4252 7.4091 21 14 9.5434 -1.3796 9.1861 22 1 9.0659 -0.0347 9.5967 23 1 9.0913 -2.3891 10.1769 24 1 11.0269 -1.3796 9.1210 25 6 9.4907 -1.5625 3.7357 26 6 6.9635 -1.4288 2.2197 27 6 6.3210 -1.1800 0.8510 28 6 2.2157 -1.1910 -0.0005 29 1 -0.3633 -0.0002 1.0277 30 1 -0.3632 0.8901 -0.5136 31 1 -0.3633 -0.8898 -0.5141 32 1 1.6937 2.1366 0.0006 33 1 4.5636 2.7615 1.0264 34 1 5.3262 2.3034 -0.5153 35 1 3.7997 3.2189 -0.5149 36 1 7.2245 -3.6235 -0.3268 37 1 5.7862 -4.5138 0.2384 38 1 7.7518 -4.6773 1.8184 39 1 6.3007 -3.9646 2.5640 40 1 9.1346 -3.7275 3.4269 41 1 6.9726 -1.7654 4.4820 42 1 7.5355 -3.3195 5.2397 43 1 7.2020 -2.6657 8.2113 44 1 10.5569 -1.7377 3.5919 45 1 9.1501 -0.6263 3.2935 46 1 6.1841 -1.6090 2.9601 47 1 7.5479 -0.5562 2.5113 48 1 7.0897 -0.8979 0.1316 49 1 5.5819 -0.3831 0.9329 50 1 1.6958 -2.1377 -0.0014 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000941468117.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:53:00 Heat of formation + Delta-G solvation = 67.953090 kcal Electronic energy + Delta-G solvation = -30674.085807 eV Core-core repulsion = 26703.215834 eV Total energy + Delta-G solvation = -3970.869972 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.08636 -40.95998 -40.02612 -38.01397 -35.59316 -34.96355 -34.03979 -33.55813 -32.09733 -29.82914 -29.08787 -28.41487 -27.92460 -26.65187 -25.62902 -24.78043 -24.20991 -22.46293 -22.16137 -20.85112 -19.89118 -18.76881 -18.52764 -17.63767 -17.29596 -17.11298 -16.93346 -16.77835 -16.42387 -16.19610 -15.64409 -15.55388 -15.39348 -15.27218 -14.60086 -14.50816 -14.14816 -13.96796 -13.86453 -13.82127 -13.50822 -13.42463 -13.27129 -13.17431 -13.06569 -13.00586 -12.77759 -12.68617 -12.60266 -12.26401 -12.20398 -12.11797 -11.87973 -11.76411 -11.45000 -11.40294 -10.86560 -10.54568 -10.10148 -10.07128 -9.79564 -9.27497 -8.88347 -7.92422 -5.27015 -0.39787 0.13098 1.43075 1.45432 1.54327 1.55909 1.81459 2.43209 2.65127 2.77551 3.00548 3.27092 3.46065 3.47739 3.64947 3.84657 3.88922 3.96787 3.98558 4.02216 4.11750 4.23290 4.27648 4.38903 4.46100 4.46126 4.57391 4.63183 4.65168 4.72127 4.76092 4.77143 4.81922 4.85940 4.91254 4.96512 4.99991 5.01059 5.09857 5.19058 5.19963 5.26535 5.27900 5.35207 5.42714 5.47136 5.72767 5.87805 6.02198 6.11399 6.26427 6.64712 6.87850 6.97155 7.57974 8.53497 9.23774 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.012400 B = 0.002749 C = 0.002531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2257.584161 B =10181.709121 C =11058.976441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.044 4.044 3 C -0.143 4.143 4 C 0.115 3.885 5 C -0.104 4.104 6 N -0.470 5.470 7 C 0.065 3.935 8 C 0.564 3.436 9 O -0.572 6.572 10 N -0.591 5.591 11 C 0.120 3.880 12 C 0.045 3.955 13 N -0.516 5.516 14 C 0.063 3.937 15 C 0.134 3.866 16 N -0.639 5.639 17 C -0.232 4.232 18 H 0.087 0.913 19 C -0.071 4.071 20 N -0.957 5.957 21 Si 0.981 3.019 22 H -0.286 1.286 23 H -0.296 1.296 24 H -0.265 1.265 25 C 0.131 3.869 26 C 0.042 3.958 27 C 0.096 3.904 28 C -0.134 4.134 29 H 0.087 0.913 30 H 0.096 0.904 31 H 0.076 0.924 32 H 0.176 0.824 33 H 0.087 0.913 34 H 0.077 0.923 35 H 0.104 0.896 36 H 0.094 0.906 37 H 0.091 0.909 38 H 0.105 0.895 39 H 0.016 0.984 40 H 0.105 0.895 41 H 0.017 0.983 42 H 0.029 0.971 43 H 0.246 0.754 44 H 0.060 0.940 45 H 0.051 0.949 46 H 0.013 0.987 47 H 0.087 0.913 48 H 0.084 0.916 49 H 0.146 0.854 50 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.104 8.801 -20.180 25.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.051 4.051 3 C -0.163 4.163 4 C -0.024 4.024 5 C -0.161 4.161 6 N -0.184 5.184 7 C -0.071 4.071 8 C 0.352 3.648 9 O -0.452 6.452 10 N -0.322 5.322 11 C -0.002 4.002 12 C -0.083 4.083 13 N -0.240 5.240 14 C -0.046 4.046 15 C 0.007 3.993 16 N -0.366 5.366 17 C -0.360 4.360 18 H 0.105 0.895 19 C -0.263 4.263 20 N -0.606 5.606 21 Si 0.809 3.191 22 H -0.213 1.213 23 H -0.222 1.222 24 H -0.189 1.189 25 C 0.006 3.994 26 C -0.086 4.086 27 C -0.027 4.027 28 C -0.155 4.155 29 H 0.106 0.894 30 H 0.115 0.885 31 H 0.095 0.905 32 H 0.194 0.806 33 H 0.105 0.895 34 H 0.096 0.904 35 H 0.123 0.877 36 H 0.113 0.887 37 H 0.109 0.891 38 H 0.123 0.877 39 H 0.034 0.966 40 H 0.123 0.877 41 H 0.035 0.965 42 H 0.047 0.953 43 H 0.055 0.945 44 H 0.078 0.922 45 H 0.069 0.931 46 H 0.032 0.968 47 H 0.105 0.895 48 H 0.103 0.897 49 H 0.163 0.837 50 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -11.081 8.306 -20.444 24.693 hybrid contribution -1.154 -0.416 2.157 2.482 sum -12.235 7.890 -18.287 23.374 Atomic orbital electron populations 1.20930 0.87234 1.04874 1.04075 1.20733 0.98805 0.91749 0.93842 1.22479 0.94268 1.00140 0.99403 1.22061 0.92587 0.94135 0.93579 1.20868 1.00427 0.90571 1.04253 1.67301 1.39717 0.98062 1.13367 1.20924 0.92286 0.91686 1.02213 1.18293 0.81487 0.87583 0.77395 1.90723 1.70133 1.33921 1.50450 1.48172 1.10678 1.11050 1.62264 1.21823 0.94927 0.86478 0.97015 1.22456 0.96515 0.93772 0.95597 1.62124 1.25659 1.03526 1.32653 1.23877 0.95372 0.99465 0.85925 1.22823 0.89822 0.94705 0.91961 1.46204 1.21424 1.68274 1.00679 1.19455 1.02833 1.31174 0.82545 0.89489 1.25680 0.97464 1.01655 1.01531 1.70047 1.16204 1.46533 1.27837 0.85039 0.78220 0.76907 0.78953 1.21271 1.22231 1.18943 1.22778 0.97891 0.95761 0.82976 1.22605 0.94708 0.94531 0.96802 1.23028 0.98982 0.87014 0.93636 1.22046 0.93100 1.00621 0.99742 0.89408 0.88499 0.90467 0.80647 0.89474 0.90395 0.87721 0.88748 0.89114 0.87660 0.96581 0.87723 0.96510 0.95302 0.94475 0.92152 0.93107 0.96833 0.89451 0.89748 0.83745 0.84212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.02 10.06 71.24 0.72 -0.30 16 2 C -0.04 -0.69 5.91 -19.69 -0.12 -0.81 16 3 C -0.14 -1.93 9.45 22.44 0.21 -1.72 16 4 C 0.12 1.99 6.78 42.68 0.29 2.28 16 5 C -0.10 -1.13 10.17 71.23 0.72 -0.41 16 6 N -0.47 -11.04 6.24 -173.08 -1.08 -12.12 16 7 C 0.06 1.74 6.48 41.91 0.27 2.01 16 8 C 0.56 17.65 7.63 86.88 0.66 18.31 16 9 O -0.57 -20.45 15.97 -3.75 -0.06 -20.51 16 10 N -0.59 -17.21 3.01 -820.99 -2.47 -19.68 16 11 C 0.12 3.20 6.60 86.35 0.57 3.76 16 12 C 0.05 1.32 5.61 86.38 0.48 1.81 16 13 N -0.52 -16.46 4.76 -875.97 -4.17 -20.62 16 14 C 0.06 2.41 4.03 46.67 0.19 2.60 16 15 C 0.13 6.64 6.81 86.44 0.59 7.23 16 16 N -0.64 -33.55 3.70 -716.56 -2.65 -36.20 16 17 C -0.23 -13.24 10.70 84.03 0.90 -12.34 16 18 H 0.09 4.70 7.83 -2.91 -0.02 4.68 16 19 C -0.07 -4.13 5.50 84.86 0.47 -3.66 16 20 N -0.96 -59.60 11.39 21.65 0.25 -59.35 16 21 Si 0.98 46.48 29.55 68.60 2.03 48.50 16 22 H -0.29 -13.27 7.11 99.48 0.71 -12.56 16 23 H -0.30 -14.14 7.11 99.48 0.71 -13.43 16 24 H -0.26 -11.75 7.11 99.48 0.71 -11.05 16 25 C 0.13 5.31 8.42 86.49 0.73 6.04 16 26 C 0.04 1.35 4.47 86.38 0.39 1.74 16 27 C 0.10 2.58 6.13 86.35 0.53 3.11 16 28 C -0.13 -3.03 9.33 22.61 0.21 -2.82 16 29 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.10 0.44 8.10 -2.39 -0.02 0.42 16 31 H 0.08 0.67 8.10 -2.39 -0.02 0.65 16 32 H 0.18 1.01 8.06 -2.91 -0.02 0.99 16 33 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 34 H 0.08 0.93 8.14 -2.38 -0.02 0.91 16 35 H 0.10 0.55 8.08 -2.39 -0.02 0.53 16 36 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 37 H 0.09 2.48 7.06 -2.39 -0.02 2.46 16 38 H 0.11 2.68 8.04 -2.39 -0.02 2.66 16 39 H 0.02 0.55 8.14 -2.39 -0.02 0.53 16 40 H 0.10 3.92 8.04 -2.39 -0.02 3.90 16 41 H 0.02 0.89 5.65 -2.39 -0.01 0.87 16 42 H 0.03 1.63 7.16 -2.39 -0.02 1.62 16 43 H 0.25 14.94 8.31 -92.71 -0.77 14.17 16 44 H 0.06 2.28 8.14 -2.39 -0.02 2.27 16 45 H 0.05 1.96 6.22 -2.39 -0.01 1.94 16 46 H 0.01 0.51 6.45 -2.39 -0.02 0.50 16 47 H 0.09 2.84 6.06 -2.39 -0.01 2.83 16 48 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 49 H 0.15 3.86 4.06 -52.38 -0.21 3.65 16 50 H 0.14 3.17 7.78 -2.91 -0.02 3.15 16 Total: -1.00 -76.00 392.03 0.40 -75.60 By element: Atomic # 1 Polarization: 16.78 SS G_CDS: 0.74 Total: 17.53 kcal Atomic # 6 Polarization: 19.04 SS G_CDS: 7.81 Total: 26.85 kcal Atomic # 7 Polarization: -137.86 SS G_CDS: -10.12 Total: -147.98 kcal Atomic # 8 Polarization: -20.45 SS G_CDS: -0.06 Total: -20.51 kcal Atomic # 14 Polarization: 46.48 SS G_CDS: 2.03 Total: 48.50 kcal Total: -76.00 0.40 -75.60 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000941468117.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.556 kcal (2) G-P(sol) polarization free energy of solvation -76.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.603 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds