Wall clock time and date at job start Wed Apr 1 2020 03:51:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38606 * 120.32479 * 2 1 4 4 N 1.31493 * 120.89591 * 179.97438 * 3 2 1 5 5 C 1.32748 * 121.65194 * 0.02562 * 4 3 2 6 6 C 1.48155 * 119.72553 * 180.02562 * 5 4 3 7 7 O 1.21518 * 119.99738 * 200.72275 * 6 5 4 8 8 N 1.34780 * 120.00388 * 20.71769 * 6 5 4 9 9 C 1.47077 * 120.88296 * 178.99624 * 8 6 5 10 10 C 1.53241 * 108.52285 * 231.16497 * 9 8 6 11 11 N 1.46895 * 109.34033 * 306.17126 * 10 9 8 12 12 C 1.46898 * 111.00149 * 187.25200 * 11 10 9 13 13 C 1.53951 * 113.73882 * 273.73900 * 12 11 10 14 14 N 1.47813 * 86.03665 * 222.08132 * 13 12 11 15 15 C 1.36936 * 134.46245 * 204.64547 * 14 13 12 16 16 H 1.07995 * 120.00342 * 179.86987 * 15 14 13 17 17 C 1.38812 * 119.99452 * 359.87123 * 15 14 13 18 18 N 1.31620 * 120.00423 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 119.99767 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47294 * 359.97438 * 19 17 15 21 21 H 1.48498 * 109.47379 * 120.00060 * 19 17 15 22 22 H 1.48508 * 109.46831 * 239.99728 * 19 17 15 23 23 C 1.47586 * 91.04999 * 24.55409 * 14 13 12 24 24 C 1.46903 * 111.26680 * 63.10176 * 11 10 9 25 25 C 1.47080 * 120.87622 * 358.97857 * 8 6 5 26 26 C 1.39274 * 120.54688 * 0.27224 * 5 4 3 27 27 C 1.38585 * 120.32436 * 179.97438 * 2 1 3 28 28 C 1.50703 * 120.75314 * 0.04218 * 27 2 1 29 29 H 1.09010 * 109.47142 * 89.99735 * 1 2 3 30 30 H 1.08996 * 109.47540 * 209.99747 * 1 2 3 31 31 H 1.08998 * 109.47301 * 330.00304 * 1 2 3 32 32 H 1.07990 * 119.54723 * 359.95867 * 3 2 1 33 33 H 1.09001 * 109.63030 * 111.45512 * 9 8 6 34 34 H 1.09007 * 109.78789 * 350.96880 * 9 8 6 35 35 H 1.08997 * 109.49316 * 186.21270 * 10 9 8 36 36 H 1.09001 * 109.49245 * 66.13125 * 10 9 8 37 37 H 1.09000 * 112.94586 * 45.33250 * 12 11 10 38 38 H 1.08998 * 113.77135 * 336.35008 * 13 12 11 39 39 H 1.09005 * 113.76339 * 107.74754 * 13 12 11 40 40 H 0.96998 * 120.00022 * 180.02562 * 18 17 15 41 41 H 1.08997 * 113.77240 * 221.15141 * 23 14 13 42 42 H 1.08998 * 113.87351 * 89.76076 * 23 14 13 43 43 H 1.09007 * 109.49238 * 56.86141 * 24 11 10 44 44 H 1.09007 * 109.49249 * 176.93613 * 24 11 10 45 45 H 1.08998 * 109.62300 * 248.54190 * 25 8 6 46 46 H 1.08997 * 109.62879 * 9.12662 * 25 8 6 47 47 H 1.07998 * 120.46271 * 179.70367 * 26 5 4 48 48 H 1.09007 * 109.47322 * 90.00255 * 28 27 2 49 49 H 1.09000 * 109.47377 * 209.99760 * 28 27 2 50 50 H 1.09002 * 109.47258 * 330.00316 * 28 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2068 1.1964 0.0000 4 7 3.5217 1.2095 0.0005 5 6 4.2295 0.0865 0.0005 6 6 5.7096 0.1511 0.0017 7 8 6.3598 -0.8057 -0.3707 8 7 6.3351 1.2709 0.4156 9 6 7.8035 1.3483 0.4454 10 6 8.2372 1.8355 1.8321 11 7 7.5425 3.0912 2.1459 12 6 8.0569 3.6810 3.3890 13 6 7.3723 3.1443 4.6592 14 7 7.3743 4.5459 5.1287 15 6 7.3445 5.1452 6.3596 16 1 7.3566 6.2224 6.4362 17 6 7.2989 4.3681 7.5088 18 7 7.2837 3.0553 7.4155 19 14 7.2576 5.1856 9.1880 20 1 7.2825 6.6609 9.0210 21 1 6.0172 4.7886 9.9014 22 1 8.4408 4.7569 9.9764 23 6 7.4235 5.0399 3.7388 24 6 6.0890 2.8919 2.2197 25 6 5.5671 2.4481 0.8490 26 6 3.5922 -1.1519 -0.0057 27 6 2.2067 -1.1962 0.0005 28 6 1.4778 -2.5153 0.0002 29 1 -0.3634 0.0000 -1.0278 30 1 -0.3634 -0.8899 0.5138 31 1 -0.3634 0.8900 0.5138 32 1 1.6647 2.1304 -0.0007 33 1 8.1487 2.0502 -0.3137 34 1 8.2290 0.3632 0.2538 35 1 9.3140 2.0043 1.8379 36 1 7.9826 1.0827 2.5781 37 1 9.1456 3.6775 3.4424 38 1 6.3750 2.7411 4.4839 39 1 8.0029 2.4807 5.2511 40 1 7.2514 2.5123 8.2186 41 1 8.0948 5.8868 3.5970 42 1 6.4421 5.1954 3.2909 43 1 5.8642 2.1244 2.9605 44 1 5.6077 3.8269 2.5068 45 1 5.6974 3.2556 0.1286 46 1 4.5113 2.1885 0.9256 47 1 4.1694 -2.0647 -0.0105 48 1 1.3028 -2.8335 -1.0276 49 1 2.0808 -3.2637 0.5144 50 1 0.5228 -2.4029 0.5133 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000941499478.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:51:33 Heat of formation + Delta-G solvation = 68.780686 kcal Electronic energy + Delta-G solvation = -30518.008711 eV Core-core repulsion = 26547.174626 eV Total energy + Delta-G solvation = -3970.834085 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.07855 -40.97331 -40.03611 -38.00124 -35.91198 -35.03653 -33.78740 -33.43583 -32.17064 -29.97270 -29.40346 -28.43279 -27.47939 -26.64108 -24.87578 -24.69186 -23.79453 -23.75710 -22.09813 -20.82914 -19.88217 -18.77717 -18.56611 -17.80825 -17.36013 -16.94591 -16.82913 -16.53307 -16.29113 -16.10520 -15.80852 -15.62263 -15.51893 -15.36694 -14.71397 -14.48903 -14.09168 -13.98925 -13.82987 -13.79775 -13.69030 -13.49946 -13.42015 -13.26245 -13.08081 -12.84677 -12.69890 -12.66279 -12.47969 -12.23745 -12.17851 -12.08929 -11.87628 -11.75111 -11.43203 -11.39894 -10.87935 -10.53363 -10.13623 -9.97491 -9.77028 -9.27077 -8.88210 -7.92570 -5.27124 -0.40508 0.15149 1.43165 1.44489 1.55106 1.56471 1.83019 2.43076 2.67182 2.80922 3.05508 3.27235 3.46989 3.53379 3.73264 3.84130 3.86186 3.88379 3.90114 4.00553 4.11657 4.16931 4.25603 4.38748 4.46651 4.51596 4.57254 4.62211 4.64708 4.69411 4.74793 4.76564 4.81947 4.88188 4.91623 4.96241 4.99138 5.01156 5.10932 5.12911 5.19950 5.26129 5.35405 5.37056 5.44674 5.48361 5.74099 5.87789 6.02652 6.11812 6.27461 6.62687 6.87965 6.97921 7.57859 8.53403 9.23809 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.012287 B = 0.002682 C = 0.002404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2278.198909 B =10436.991850 C =11646.506111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.110 4.110 3 C 0.090 3.910 4 N -0.464 5.464 5 C 0.050 3.950 6 C 0.565 3.435 7 O -0.574 6.574 8 N -0.592 5.592 9 C 0.120 3.880 10 C 0.045 3.955 11 N -0.516 5.516 12 C 0.063 3.937 13 C 0.134 3.866 14 N -0.639 5.639 15 C -0.230 4.230 16 H 0.087 0.913 17 C -0.071 4.071 18 N -0.957 5.957 19 Si 0.981 3.019 20 H -0.262 1.262 21 H -0.293 1.293 22 H -0.292 1.292 23 C 0.131 3.869 24 C 0.042 3.958 25 C 0.095 3.905 26 C -0.120 4.120 27 C -0.054 4.054 28 C -0.118 4.118 29 H 0.093 0.907 30 H 0.085 0.915 31 H 0.086 0.914 32 H 0.193 0.807 33 H 0.094 0.906 34 H 0.090 0.910 35 H 0.105 0.895 36 H 0.016 0.984 37 H 0.105 0.895 38 H 0.018 0.982 39 H 0.028 0.972 40 H 0.246 0.754 41 H 0.060 0.940 42 H 0.052 0.948 43 H 0.014 0.986 44 H 0.087 0.913 45 H 0.085 0.915 46 H 0.147 0.853 47 H 0.140 0.860 48 H 0.093 0.907 49 H 0.073 0.927 50 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.105 -7.306 -20.277 25.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.112 4.112 3 C -0.069 4.069 4 N -0.176 5.176 5 C -0.085 4.085 6 C 0.353 3.647 7 O -0.454 6.454 8 N -0.322 5.322 9 C -0.002 4.002 10 C -0.083 4.083 11 N -0.240 5.240 12 C -0.046 4.046 13 C 0.007 3.993 14 N -0.366 5.366 15 C -0.359 4.359 16 H 0.105 0.895 17 C -0.264 4.264 18 N -0.606 5.606 19 Si 0.809 3.191 20 H -0.186 1.186 21 H -0.220 1.220 22 H -0.219 1.219 23 C 0.006 3.994 24 C -0.087 4.087 25 C -0.027 4.027 26 C -0.141 4.141 27 C -0.062 4.062 28 C -0.174 4.174 29 H 0.111 0.889 30 H 0.104 0.896 31 H 0.104 0.896 32 H 0.210 0.790 33 H 0.112 0.888 34 H 0.109 0.891 35 H 0.123 0.877 36 H 0.034 0.966 37 H 0.123 0.877 38 H 0.035 0.965 39 H 0.047 0.953 40 H 0.055 0.945 41 H 0.078 0.922 42 H 0.069 0.931 43 H 0.032 0.968 44 H 0.106 0.894 45 H 0.103 0.897 46 H 0.163 0.837 47 H 0.158 0.842 48 H 0.111 0.889 49 H 0.092 0.908 50 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -13.163 -6.647 -20.546 25.290 hybrid contribution -0.171 -1.136 2.124 2.415 sum -13.334 -7.782 -18.422 24.036 Atomic orbital electron populations 1.20948 0.87120 1.04861 1.04175 1.21420 0.99677 0.92735 0.97363 1.23429 0.88799 0.99672 0.95036 1.67414 1.09540 1.28577 1.12083 1.20878 0.93114 0.90943 1.03606 1.18299 0.86995 0.82097 0.77328 1.90722 1.67032 1.37163 1.50506 1.48164 1.07726 1.13928 1.62393 1.21806 0.78786 1.02685 0.96972 1.22453 1.00318 0.89940 0.95612 1.62123 1.03989 1.25206 1.32667 1.23876 0.99224 0.95606 0.85934 1.22824 0.96276 0.88217 0.91996 1.46214 1.86180 1.03511 1.00704 1.19490 1.42234 0.91582 0.82558 0.89478 1.25682 1.03068 0.96117 1.01526 1.70053 1.58484 1.04390 1.27707 0.84970 0.76647 0.78240 0.79245 1.18583 1.22018 1.21946 1.22780 0.98083 0.95567 0.82996 1.22613 0.88760 1.00480 0.96843 1.23029 0.99503 0.86490 0.93665 1.22038 0.95544 0.98029 0.98501 1.20576 0.92284 0.97808 0.95507 1.20982 1.00906 0.91256 1.04238 0.88894 0.89596 0.89551 0.79015 0.88811 0.89143 0.87695 0.96582 0.87740 0.96474 0.95310 0.94481 0.92151 0.93085 0.96791 0.89439 0.89715 0.83675 0.84245 0.88870 0.90811 0.88570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.68 9.65 71.23 0.69 0.01 16 2 C -0.11 -1.49 5.91 -19.69 -0.12 -1.61 16 3 C 0.09 1.46 10.86 84.83 0.92 2.38 16 4 N -0.46 -10.66 6.33 -184.92 -1.17 -11.83 16 5 C 0.05 1.33 6.48 41.89 0.27 1.60 16 6 C 0.56 17.66 7.63 86.88 0.66 18.32 16 7 O -0.57 -20.56 15.97 -3.77 -0.06 -20.62 16 8 N -0.59 -17.23 3.01 -820.99 -2.47 -19.70 16 9 C 0.12 3.21 6.59 86.35 0.57 3.78 16 10 C 0.05 1.33 5.61 86.38 0.48 1.82 16 11 N -0.52 -16.51 4.76 -875.95 -4.17 -20.67 16 12 C 0.06 2.42 4.03 46.67 0.19 2.61 16 13 C 0.13 6.65 6.81 86.44 0.59 7.24 16 14 N -0.64 -33.61 3.70 -716.58 -2.65 -36.27 16 15 C -0.23 -13.17 10.70 84.03 0.90 -12.27 16 16 H 0.09 4.73 7.83 -2.91 -0.02 4.70 16 17 C -0.07 -4.17 5.50 84.86 0.47 -3.70 16 18 N -0.96 -59.66 11.39 21.65 0.25 -59.41 16 19 Si 0.98 46.57 29.55 68.60 2.03 48.59 16 20 H -0.26 -11.54 7.11 99.48 0.71 -10.83 16 21 H -0.29 -13.90 7.11 99.48 0.71 -13.19 16 22 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16 23 C 0.13 5.32 8.42 86.49 0.73 6.05 16 24 C 0.04 1.34 4.47 86.38 0.39 1.72 16 25 C 0.10 2.57 6.13 86.35 0.53 3.10 16 26 C -0.12 -2.72 9.33 22.61 0.21 -2.51 16 27 C -0.05 -0.87 5.91 -19.69 -0.12 -0.98 16 28 C -0.12 -1.08 9.67 71.24 0.69 -0.39 16 29 H 0.09 0.34 8.14 -2.38 -0.02 0.32 16 30 H 0.09 0.36 6.06 -2.39 -0.01 0.34 16 31 H 0.09 0.36 8.09 -2.39 -0.02 0.34 16 32 H 0.19 1.85 8.06 -2.92 -0.02 1.83 16 33 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 34 H 0.09 2.48 7.08 -2.38 -0.02 2.47 16 35 H 0.10 2.68 8.04 -2.39 -0.02 2.66 16 36 H 0.02 0.55 8.14 -2.39 -0.02 0.53 16 37 H 0.10 3.92 8.04 -2.39 -0.02 3.90 16 38 H 0.02 0.91 5.65 -2.39 -0.01 0.89 16 39 H 0.03 1.63 7.17 -2.38 -0.02 1.61 16 40 H 0.25 14.91 8.31 -92.71 -0.77 14.14 16 41 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 42 H 0.05 1.97 6.22 -2.39 -0.01 1.96 16 43 H 0.01 0.53 6.45 -2.38 -0.02 0.51 16 44 H 0.09 2.85 6.06 -2.38 -0.01 2.83 16 45 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 46 H 0.15 3.83 4.05 -52.76 -0.21 3.62 16 47 H 0.14 3.18 7.78 -2.91 -0.02 3.16 16 48 H 0.09 0.63 8.14 -2.38 -0.02 0.61 16 49 H 0.07 0.71 8.10 -2.39 -0.02 0.69 16 50 H 0.10 0.53 6.07 -2.39 -0.01 0.52 16 Total: -1.00 -76.33 387.67 0.56 -75.78 By element: Atomic # 1 Polarization: 16.24 SS G_CDS: 0.75 Total: 16.99 kcal Atomic # 6 Polarization: 19.10 SS G_CDS: 8.05 Total: 27.15 kcal Atomic # 7 Polarization: -137.67 SS G_CDS: -10.22 Total: -147.89 kcal Atomic # 8 Polarization: -20.56 SS G_CDS: -0.06 Total: -20.62 kcal Atomic # 14 Polarization: 46.57 SS G_CDS: 2.03 Total: 48.59 kcal Total: -76.33 0.56 -75.78 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000941499478.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.559 kcal (2) G-P(sol) polarization free energy of solvation -76.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.778 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds