Wall clock time and date at job start Wed Apr 1 2020 03:29:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38230 * 120.41637 * 2 1 4 4 N 1.31855 * 120.75879 * 180.02562 * 3 2 1 5 5 C 1.31881 * 121.73257 * 0.02562 * 4 3 2 6 6 C 1.38179 * 120.76172 * 0.02562 * 5 4 3 7 7 C 1.50703 * 120.41862 * 179.97438 * 6 5 4 8 8 C 1.50701 * 109.47064 * 90.00146 * 7 6 5 9 9 O 1.21280 * 119.99781 * 0.02562 * 8 7 6 10 10 N 1.34780 * 119.99795 * 179.97438 * 8 7 6 11 11 C 1.47074 * 120.88261 * 359.72571 * 10 8 7 12 12 C 1.53695 * 108.27576 * 128.74910 * 11 10 8 13 13 N 1.46904 * 109.25420 * 54.08473 * 12 11 10 14 14 C 1.46897 * 110.99901 * 172.60509 * 13 12 11 15 15 C 1.53949 * 113.74361 * 43.04158 * 14 13 12 16 16 N 1.47817 * 86.03820 * 222.08352 * 15 14 13 17 17 C 1.36929 * 134.45494 * 204.64239 * 16 15 14 18 18 H 1.08005 * 119.99968 * 179.86512 * 17 16 15 19 19 C 1.38809 * 120.00375 * 359.87115 * 17 16 15 20 20 N 1.31627 * 119.99753 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 120.00209 * 180.02562 * 19 17 16 22 22 H 1.48494 * 109.47215 * 89.99948 * 21 19 17 23 23 H 1.48501 * 109.47048 * 209.99488 * 21 19 17 24 24 H 1.48500 * 109.47042 * 329.99554 * 21 19 17 25 25 C 1.47579 * 91.04895 * 24.54699 * 16 15 14 26 26 C 1.46897 * 111.26792 * 296.75440 * 13 12 11 27 27 C 1.47075 * 120.87669 * 180.02562 * 10 8 7 28 28 C 1.38625 * 120.42385 * 180.30244 * 2 1 3 29 29 H 1.09002 * 109.47166 * 89.99820 * 1 2 3 30 30 H 1.09002 * 109.47260 * 209.99706 * 1 2 3 31 31 H 1.09000 * 109.47231 * 329.99674 * 1 2 3 32 32 H 1.07998 * 119.62158 * 359.97438 * 3 2 1 33 33 H 1.08001 * 119.61815 * 180.02562 * 5 4 3 34 34 H 1.09002 * 109.47152 * 330.00239 * 7 6 5 35 35 H 1.09001 * 109.46980 * 210.00340 * 7 6 5 36 36 H 1.08994 * 109.63016 * 248.52290 * 11 10 8 37 37 H 1.09001 * 109.62513 * 9.10199 * 11 10 8 38 38 H 1.08997 * 109.65385 * 294.08176 * 12 11 10 39 39 H 1.08999 * 109.42153 * 173.94686 * 12 11 10 40 40 H 1.09003 * 112.94756 * 174.63443 * 14 13 12 41 41 H 1.08997 * 113.76546 * 336.34932 * 15 14 13 42 42 H 1.09001 * 113.76822 * 107.74231 * 15 14 13 43 43 H 0.97003 * 119.99858 * 180.02562 * 20 19 17 44 44 H 1.08995 * 113.77043 * 221.14719 * 25 16 15 45 45 H 1.09007 * 113.76623 * 89.75631 * 25 16 15 46 46 H 1.09001 * 109.49120 * 303.14081 * 26 13 12 47 47 H 1.09003 * 109.48945 * 183.06528 * 26 13 12 48 48 H 1.09003 * 109.63301 * 350.89825 * 27 10 8 49 49 H 1.09003 * 109.62726 * 111.48107 * 27 10 8 50 50 H 1.08010 * 120.78578 * 359.97438 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2068 1.1921 0.0000 4 7 3.5253 1.1999 -0.0005 5 6 4.2256 0.0824 -0.0015 6 6 3.5948 -1.1470 -0.0026 7 6 4.4027 -2.4191 -0.0044 8 6 4.6725 -2.8448 1.4159 9 8 4.2500 -2.1807 2.3386 10 7 5.3826 -3.9639 1.6606 11 6 5.8981 -4.7874 0.5564 12 6 7.3978 -5.0263 0.7928 13 7 7.5926 -5.5939 2.1336 14 6 8.9897 -6.0004 2.3354 15 6 10.0145 -4.9794 1.8087 16 7 10.7594 -6.1472 1.2927 17 6 12.0714 -6.3874 0.9831 18 1 12.3702 -7.3571 0.6131 19 6 13.0176 -5.3847 1.1450 20 7 12.6534 -4.2028 1.5956 21 14 14.8074 -5.7123 0.7220 22 1 15.0502 -5.3689 -0.7022 23 1 15.6809 -4.8799 1.5877 24 1 15.1138 -7.1482 0.9443 25 6 9.5222 -6.9505 1.2474 26 6 7.1615 -4.6547 3.1776 27 6 5.6568 -4.3975 3.0389 28 6 2.2089 -1.1954 -0.0063 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3634 -0.8900 0.5138 31 1 -0.3634 0.8899 0.5139 32 1 1.6674 2.1277 -0.0004 33 1 5.3046 0.1287 -0.0015 34 1 5.3486 -2.2481 -0.5184 35 1 3.8460 -3.2024 -0.5189 36 1 5.3713 -5.7413 0.5342 37 1 5.7538 -4.2642 -0.3888 38 1 7.9361 -4.0816 0.7161 39 1 7.7763 -5.7227 0.0445 40 1 9.1910 -6.3400 3.3514 41 1 9.6235 -4.3275 1.0276 42 1 10.5375 -4.4360 2.5957 43 1 13.3146 -3.5020 1.7083 44 1 9.6528 -7.9780 1.5870 45 1 8.9863 -6.8789 0.3009 46 1 7.7031 -3.7152 3.0677 47 1 7.3685 -5.0817 4.1589 48 1 5.3530 -3.6164 3.7359 49 1 5.1073 -5.3149 3.2504 50 1 1.6887 -2.1419 -0.0109 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000941502166.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:29:20 Heat of formation + Delta-G solvation = 75.202022 kcal Electronic energy + Delta-G solvation = -29943.245343 eV Core-core repulsion = 25972.689708 eV Total energy + Delta-G solvation = -3970.555635 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.82066 -40.04223 -38.86333 -36.63820 -34.03069 -33.82738 -33.67007 -31.93651 -31.14162 -28.85506 -27.77411 -27.52701 -26.09698 -24.91907 -23.83844 -23.44920 -22.78195 -21.98494 -20.92219 -19.34471 -18.35209 -17.31253 -17.19349 -16.94393 -16.82140 -16.10775 -15.55820 -15.29952 -15.03038 -14.82165 -14.59050 -14.50983 -14.26999 -13.86483 -13.64329 -13.46089 -13.34165 -13.26378 -12.92250 -12.81524 -12.45652 -12.40986 -12.17594 -12.11101 -11.89407 -11.68431 -11.61366 -11.21444 -11.03740 -10.86428 -10.75207 -10.58120 -10.21280 -10.08602 -9.92944 -9.71619 -9.63598 -9.53853 -9.00503 -8.84891 -8.75080 -7.87389 -6.89930 -5.80534 -3.13538 0.86643 1.07445 2.49872 2.85422 3.36071 3.40907 3.43284 3.58628 4.06843 4.14908 4.39658 4.43814 4.46063 4.46524 4.70902 4.74984 4.82204 4.89081 4.97667 5.02074 5.13528 5.16401 5.21920 5.23159 5.29712 5.36007 5.41211 5.45390 5.48625 5.56453 5.62115 5.68292 5.69458 5.81361 5.94364 5.95678 6.00597 6.06376 6.12304 6.28046 6.37550 6.49254 6.51334 6.58561 6.95555 7.16528 7.28438 7.33744 7.48456 7.57566 7.78949 7.93819 8.04731 9.00042 9.66754 10.54852 11.36039 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.018265 B = 0.002132 C = 0.002001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1532.585691 B =13127.823329 C =13992.477036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.139 4.139 3 C 0.094 3.906 4 N -0.480 5.480 5 C 0.108 3.892 6 C -0.110 4.110 7 C -0.099 4.099 8 C 0.517 3.483 9 O -0.539 6.539 10 N -0.611 5.611 11 C 0.110 3.890 12 C 0.033 3.967 13 N -0.529 5.529 14 C 0.035 3.965 15 C 0.133 3.867 16 N -0.609 5.609 17 C -0.222 4.222 18 H 0.080 0.920 19 C -0.009 4.009 20 N -0.922 5.922 21 Si 0.912 3.088 22 H -0.289 1.289 23 H -0.290 1.290 24 H -0.280 1.280 25 C 0.125 3.875 26 C 0.042 3.958 27 C 0.119 3.881 28 C -0.063 4.063 29 H 0.072 0.928 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.153 0.847 33 H 0.153 0.847 34 H 0.109 0.891 35 H 0.105 0.895 36 H 0.078 0.922 37 H 0.085 0.915 38 H 0.049 0.951 39 H 0.094 0.906 40 H 0.100 0.900 41 H 0.029 0.971 42 H 0.069 0.931 43 H 0.253 0.747 44 H 0.046 0.954 45 H 0.037 0.963 46 H 0.041 0.959 47 H 0.085 0.915 48 H 0.091 0.909 49 H 0.073 0.927 50 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.305 3.335 -3.678 24.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.141 4.141 3 C -0.063 4.063 4 N -0.187 5.187 5 C -0.049 4.049 6 C -0.112 4.112 7 C -0.140 4.140 8 C 0.305 3.695 9 O -0.416 6.416 10 N -0.345 5.345 11 C -0.013 4.013 12 C -0.095 4.095 13 N -0.254 5.254 14 C -0.074 4.074 15 C 0.006 3.994 16 N -0.336 5.336 17 C -0.350 4.350 18 H 0.098 0.902 19 C -0.205 4.205 20 N -0.569 5.569 21 Si 0.742 3.258 22 H -0.216 1.216 23 H -0.216 1.216 24 H -0.206 1.206 25 C -0.002 4.002 26 C -0.087 4.087 27 C -0.004 4.004 28 C -0.089 4.089 29 H 0.091 0.909 30 H 0.087 0.913 31 H 0.088 0.912 32 H 0.170 0.830 33 H 0.171 0.829 34 H 0.127 0.873 35 H 0.123 0.877 36 H 0.096 0.904 37 H 0.103 0.897 38 H 0.067 0.933 39 H 0.112 0.888 40 H 0.118 0.882 41 H 0.046 0.954 42 H 0.087 0.913 43 H 0.063 0.937 44 H 0.064 0.936 45 H 0.055 0.945 46 H 0.059 0.941 47 H 0.103 0.897 48 H 0.110 0.890 49 H 0.091 0.909 50 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -24.024 4.155 -3.158 24.585 hybrid contribution 1.280 -0.287 -0.431 1.381 sum -22.744 3.867 -3.589 23.348 Atomic orbital electron populations 1.20708 0.90225 1.03187 1.02472 1.20886 0.97534 0.94091 1.01583 1.22657 0.90019 0.97407 0.96207 1.67681 1.08331 1.31083 1.11618 1.22607 1.00283 0.87068 0.94917 1.20297 0.94253 0.95448 1.01232 1.20644 1.01896 0.95954 0.95462 1.20425 0.77929 0.80103 0.91044 1.90716 1.51328 1.53335 1.46183 1.48204 1.53569 1.24656 1.08039 1.22071 0.94846 0.95380 0.88962 1.22695 0.94221 0.99975 0.92655 1.62027 1.22534 1.39261 1.01541 1.24293 0.84017 0.99020 1.00026 1.22917 0.89055 0.91103 0.96300 1.45814 1.01418 1.09689 1.76633 1.19004 0.81121 0.97435 1.37437 0.90173 1.24800 0.98181 0.95759 1.01764 1.69826 1.32891 1.03036 1.51111 0.86117 0.84482 0.77391 0.77763 1.21613 1.21626 1.20558 1.22693 0.87191 0.95250 0.95033 1.22400 0.94376 0.95516 0.96359 1.21742 0.95631 1.00343 0.82670 1.21298 0.93211 0.98231 0.96204 0.90949 0.91341 0.91157 0.82995 0.82944 0.87320 0.87677 0.90414 0.89677 0.93319 0.88800 0.88180 0.95385 0.91280 0.93654 0.93620 0.94529 0.94075 0.89659 0.89037 0.90902 0.85119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.63 10.04 36.00 0.36 -0.27 16 2 C -0.14 -1.25 5.90 -104.49 -0.62 -1.86 16 3 C 0.09 0.96 10.86 -17.54 -0.19 0.77 16 4 N -0.48 -6.00 10.36 -13.25 -0.14 -6.13 16 5 C 0.11 1.27 10.86 -17.55 -0.19 1.08 16 6 C -0.11 -1.15 4.39 -104.48 -0.46 -1.60 16 7 C -0.10 -0.86 4.22 -29.03 -0.12 -0.99 16 8 C 0.52 6.28 7.70 -10.98 -0.08 6.20 16 9 O -0.54 -8.60 15.49 5.56 0.09 -8.52 16 10 N -0.61 -6.99 3.00 -172.16 -0.52 -7.51 16 11 C 0.11 1.08 6.53 -3.37 -0.02 1.05 16 12 C 0.03 0.44 4.65 -3.46 -0.02 0.42 16 13 N -0.53 -7.64 4.77 -227.90 -1.09 -8.72 16 14 C 0.04 0.63 4.05 -69.90 -0.28 0.35 16 15 C 0.13 3.02 6.81 -2.83 -0.02 3.00 16 16 N -0.61 -15.24 3.70 -177.83 -0.66 -15.89 16 17 C -0.22 -6.16 10.70 -15.06 -0.16 -6.32 16 18 H 0.08 2.14 7.83 -52.48 -0.41 1.73 16 19 C -0.01 -0.24 5.50 -17.43 -0.10 -0.34 16 20 N -0.92 -27.26 11.39 55.49 0.63 -26.62 16 21 Si 0.91 22.02 29.55 -169.99 -5.02 17.00 16 22 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 23 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 24 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 25 C 0.12 2.44 8.40 -2.97 -0.02 2.41 16 26 C 0.04 0.57 5.55 -3.68 -0.02 0.55 16 27 C 0.12 1.41 6.60 -3.58 -0.02 1.39 16 28 C -0.06 -0.60 9.55 -39.28 -0.37 -0.98 16 29 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 30 H 0.07 0.37 8.10 -51.93 -0.42 -0.06 16 31 H 0.07 0.34 8.09 -51.93 -0.42 -0.08 16 32 H 0.15 1.14 8.06 -52.49 -0.42 0.71 16 33 H 0.15 1.61 8.06 -52.49 -0.42 1.18 16 34 H 0.11 0.80 7.63 -51.93 -0.40 0.40 16 35 H 0.11 0.65 7.94 -51.93 -0.41 0.23 16 36 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.08 0.62 6.02 -51.93 -0.31 0.30 16 38 H 0.05 0.75 6.38 -51.93 -0.33 0.42 16 39 H 0.09 1.28 5.81 -51.93 -0.30 0.98 16 40 H 0.10 1.81 8.11 -51.93 -0.42 1.39 16 41 H 0.03 0.66 5.76 -51.93 -0.30 0.36 16 42 H 0.07 1.79 7.17 -51.93 -0.37 1.42 16 43 H 0.25 7.30 8.31 -40.82 -0.34 6.96 16 44 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 45 H 0.04 0.68 5.93 -51.92 -0.31 0.37 16 46 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 47 H 0.09 1.06 8.09 -51.93 -0.42 0.64 16 48 H 0.09 1.17 7.06 -51.93 -0.37 0.80 16 49 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 50 H 0.13 0.97 8.06 -52.48 -0.42 0.55 16 LS Contribution 395.00 15.07 5.95 5.95 Total: -1.00 -34.65 395.00 -10.81 -45.46 By element: Atomic # 1 Polarization: 7.84 SS G_CDS: -7.71 Total: 0.13 kcal Atomic # 6 Polarization: 7.21 SS G_CDS: -2.34 Total: 4.87 kcal Atomic # 7 Polarization: -63.12 SS G_CDS: -1.77 Total: -64.88 kcal Atomic # 8 Polarization: -8.60 SS G_CDS: 0.09 Total: -8.52 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -34.65 -10.81 -45.46 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000941502166.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.660 kcal (2) G-P(sol) polarization free energy of solvation -34.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.458 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds