Wall clock time and date at job start Wed Apr 1 2020 03:29:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38230 * 120.41637 * 2 1 4 4 N 1.31855 * 120.75879 * 180.02562 * 3 2 1 5 5 C 1.31881 * 121.73257 * 0.02562 * 4 3 2 6 6 C 1.38179 * 120.76172 * 0.02562 * 5 4 3 7 7 C 1.50703 * 120.41862 * 179.97438 * 6 5 4 8 8 C 1.50701 * 109.47064 * 90.00146 * 7 6 5 9 9 O 1.21280 * 119.99781 * 0.02562 * 8 7 6 10 10 N 1.34780 * 119.99795 * 179.97438 * 8 7 6 11 11 C 1.47074 * 120.88261 * 359.72571 * 10 8 7 12 12 C 1.53695 * 108.27576 * 128.74910 * 11 10 8 13 13 N 1.46904 * 109.25420 * 54.08473 * 12 11 10 14 14 C 1.46897 * 110.99901 * 172.60509 * 13 12 11 15 15 C 1.53949 * 113.74361 * 43.04158 * 14 13 12 16 16 N 1.47817 * 86.03820 * 222.08352 * 15 14 13 17 17 C 1.36929 * 134.45494 * 204.64239 * 16 15 14 18 18 H 1.08005 * 119.99968 * 179.86512 * 17 16 15 19 19 C 1.38809 * 120.00375 * 359.87115 * 17 16 15 20 20 N 1.31627 * 119.99753 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 120.00209 * 180.02562 * 19 17 16 22 22 H 1.48494 * 109.47215 * 89.99948 * 21 19 17 23 23 H 1.48501 * 109.47048 * 209.99488 * 21 19 17 24 24 H 1.48500 * 109.47042 * 329.99554 * 21 19 17 25 25 C 1.47579 * 91.04895 * 24.54699 * 16 15 14 26 26 C 1.46897 * 111.26792 * 296.75440 * 13 12 11 27 27 C 1.47075 * 120.87669 * 180.02562 * 10 8 7 28 28 C 1.38625 * 120.42385 * 180.30244 * 2 1 3 29 29 H 1.09002 * 109.47166 * 89.99820 * 1 2 3 30 30 H 1.09002 * 109.47260 * 209.99706 * 1 2 3 31 31 H 1.09000 * 109.47231 * 329.99674 * 1 2 3 32 32 H 1.07998 * 119.62158 * 359.97438 * 3 2 1 33 33 H 1.08001 * 119.61815 * 180.02562 * 5 4 3 34 34 H 1.09002 * 109.47152 * 330.00239 * 7 6 5 35 35 H 1.09001 * 109.46980 * 210.00340 * 7 6 5 36 36 H 1.08994 * 109.63016 * 248.52290 * 11 10 8 37 37 H 1.09001 * 109.62513 * 9.10199 * 11 10 8 38 38 H 1.08997 * 109.65385 * 294.08176 * 12 11 10 39 39 H 1.08999 * 109.42153 * 173.94686 * 12 11 10 40 40 H 1.09003 * 112.94756 * 174.63443 * 14 13 12 41 41 H 1.08997 * 113.76546 * 336.34932 * 15 14 13 42 42 H 1.09001 * 113.76822 * 107.74231 * 15 14 13 43 43 H 0.97003 * 119.99858 * 180.02562 * 20 19 17 44 44 H 1.08995 * 113.77043 * 221.14719 * 25 16 15 45 45 H 1.09007 * 113.76623 * 89.75631 * 25 16 15 46 46 H 1.09001 * 109.49120 * 303.14081 * 26 13 12 47 47 H 1.09003 * 109.48945 * 183.06528 * 26 13 12 48 48 H 1.09003 * 109.63301 * 350.89825 * 27 10 8 49 49 H 1.09003 * 109.62726 * 111.48107 * 27 10 8 50 50 H 1.08010 * 120.78578 * 359.97438 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2068 1.1921 0.0000 4 7 3.5253 1.1999 -0.0005 5 6 4.2256 0.0824 -0.0015 6 6 3.5948 -1.1470 -0.0026 7 6 4.4027 -2.4191 -0.0044 8 6 4.6725 -2.8448 1.4159 9 8 4.2500 -2.1807 2.3386 10 7 5.3826 -3.9639 1.6606 11 6 5.8981 -4.7874 0.5564 12 6 7.3978 -5.0263 0.7928 13 7 7.5926 -5.5939 2.1336 14 6 8.9897 -6.0004 2.3354 15 6 10.0145 -4.9794 1.8087 16 7 10.7594 -6.1472 1.2927 17 6 12.0714 -6.3874 0.9831 18 1 12.3702 -7.3571 0.6131 19 6 13.0176 -5.3847 1.1450 20 7 12.6534 -4.2028 1.5956 21 14 14.8074 -5.7123 0.7220 22 1 15.0502 -5.3689 -0.7022 23 1 15.6809 -4.8799 1.5877 24 1 15.1138 -7.1482 0.9443 25 6 9.5222 -6.9505 1.2474 26 6 7.1615 -4.6547 3.1776 27 6 5.6568 -4.3975 3.0389 28 6 2.2089 -1.1954 -0.0063 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3634 -0.8900 0.5138 31 1 -0.3634 0.8899 0.5139 32 1 1.6674 2.1277 -0.0004 33 1 5.3046 0.1287 -0.0015 34 1 5.3486 -2.2481 -0.5184 35 1 3.8460 -3.2024 -0.5189 36 1 5.3713 -5.7413 0.5342 37 1 5.7538 -4.2642 -0.3888 38 1 7.9361 -4.0816 0.7161 39 1 7.7763 -5.7227 0.0445 40 1 9.1910 -6.3400 3.3514 41 1 9.6235 -4.3275 1.0276 42 1 10.5375 -4.4360 2.5957 43 1 13.3146 -3.5020 1.7083 44 1 9.6528 -7.9780 1.5870 45 1 8.9863 -6.8789 0.3009 46 1 7.7031 -3.7152 3.0677 47 1 7.3685 -5.0817 4.1589 48 1 5.3530 -3.6164 3.7359 49 1 5.1073 -5.3149 3.2504 50 1 1.6887 -2.1419 -0.0109 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000941502166.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:29:19 Heat of formation + Delta-G solvation = 51.700913 kcal Electronic energy + Delta-G solvation = -29944.264427 eV Core-core repulsion = 25972.689708 eV Total energy + Delta-G solvation = -3971.574720 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.68837 -41.04993 -40.15645 -37.92015 -35.21545 -34.65583 -34.49107 -33.76174 -32.18411 -29.99043 -29.12843 -28.15881 -27.42269 -26.63241 -24.83985 -24.52894 -24.12166 -23.01110 -21.90068 -20.61473 -19.56045 -18.74039 -18.28544 -17.92427 -17.68908 -17.15121 -16.96667 -16.70017 -16.32693 -16.12571 -15.67601 -15.53283 -15.23274 -15.21893 -14.58736 -14.46267 -14.19211 -13.96920 -13.92485 -13.79585 -13.52437 -13.41859 -13.34959 -13.25633 -13.17597 -13.04535 -12.82624 -12.65918 -12.37737 -12.24275 -12.16279 -12.04852 -11.82928 -11.74896 -11.37339 -11.03170 -10.85787 -10.48843 -10.40834 -9.78419 -9.73242 -9.25199 -8.86111 -7.92286 -5.26292 0.12114 0.34146 1.43557 1.45355 1.54217 1.58770 1.97315 2.43910 2.80268 2.87798 3.27748 3.45130 3.47706 3.60238 3.70691 3.83015 3.85136 3.95355 4.02543 4.05972 4.06730 4.18517 4.25451 4.27515 4.38674 4.41731 4.48044 4.51004 4.60775 4.67956 4.73953 4.77493 4.81056 4.84901 4.89821 4.93061 4.96353 5.01772 5.12109 5.20149 5.22408 5.25270 5.32991 5.38383 5.44530 5.49249 5.79912 5.89259 6.06715 6.13389 6.41145 6.88797 7.01989 7.13128 7.58918 8.53924 9.23691 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.018265 B = 0.002132 C = 0.002001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1532.585691 B =13127.823329 C =13992.477036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.138 4.138 3 C 0.077 3.923 4 N -0.512 5.512 5 C 0.080 3.920 6 C -0.116 4.116 7 C -0.093 4.093 8 C 0.515 3.485 9 O -0.583 6.583 10 N -0.612 5.612 11 C 0.118 3.882 12 C 0.031 3.969 13 N -0.514 5.514 14 C 0.064 3.936 15 C 0.133 3.867 16 N -0.640 5.640 17 C -0.229 4.229 18 H 0.087 0.913 19 C -0.072 4.072 20 N -0.957 5.957 21 Si 0.979 3.021 22 H -0.286 1.286 23 H -0.297 1.297 24 H -0.265 1.265 25 C 0.129 3.871 26 C 0.045 3.955 27 C 0.125 3.875 28 C -0.072 4.072 29 H 0.088 0.912 30 H 0.076 0.924 31 H 0.079 0.921 32 H 0.172 0.828 33 H 0.150 0.850 34 H 0.123 0.877 35 H 0.142 0.858 36 H 0.101 0.899 37 H 0.117 0.883 38 H 0.022 0.978 39 H 0.095 0.905 40 H 0.101 0.899 41 H 0.020 0.980 42 H 0.026 0.974 43 H 0.246 0.754 44 H 0.058 0.942 45 H 0.059 0.941 46 H 0.014 0.986 47 H 0.095 0.905 48 H 0.080 0.920 49 H 0.092 0.908 50 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.679 1.237 -4.993 27.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.139 4.139 3 C -0.080 4.080 4 N -0.220 5.220 5 C -0.076 4.076 6 C -0.119 4.119 7 C -0.132 4.132 8 C 0.305 3.695 9 O -0.463 6.463 10 N -0.345 5.345 11 C -0.004 4.004 12 C -0.098 4.098 13 N -0.238 5.238 14 C -0.045 4.045 15 C 0.006 3.994 16 N -0.367 5.367 17 C -0.358 4.358 18 H 0.105 0.895 19 C -0.264 4.264 20 N -0.606 5.606 21 Si 0.807 3.193 22 H -0.213 1.213 23 H -0.224 1.224 24 H -0.189 1.189 25 C 0.005 3.995 26 C -0.084 4.084 27 C 0.002 3.998 28 C -0.098 4.098 29 H 0.106 0.894 30 H 0.094 0.906 31 H 0.098 0.902 32 H 0.189 0.811 33 H 0.168 0.832 34 H 0.141 0.859 35 H 0.159 0.841 36 H 0.119 0.881 37 H 0.135 0.865 38 H 0.040 0.960 39 H 0.113 0.887 40 H 0.119 0.881 41 H 0.038 0.962 42 H 0.044 0.956 43 H 0.055 0.945 44 H 0.077 0.923 45 H 0.076 0.924 46 H 0.032 0.968 47 H 0.113 0.887 48 H 0.098 0.902 49 H 0.110 0.890 50 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -26.429 2.007 -4.496 26.884 hybrid contribution 1.939 0.375 -0.014 1.975 sum -24.491 2.382 -4.510 25.016 Atomic orbital electron populations 1.20774 0.87788 1.04052 1.03693 1.21268 0.99290 0.93507 0.99882 1.23092 0.89557 0.99016 0.96348 1.67623 1.09722 1.31915 1.12766 1.22737 1.00497 0.87892 0.96484 1.20470 0.95046 0.95465 1.00869 1.20712 1.02970 0.96163 0.93386 1.20995 0.77100 0.79413 0.91994 1.90700 1.53238 1.54540 1.47844 1.48315 1.53214 1.24753 1.08229 1.22195 0.91912 0.96700 0.89584 1.22763 0.96852 0.98479 0.91686 1.62094 1.19385 1.39653 1.02646 1.23834 0.84993 0.96216 0.99471 1.22826 0.90156 0.91331 0.95060 1.46200 1.02163 1.11542 1.76835 1.19435 0.82777 0.97581 1.35981 0.89503 1.25662 1.02396 0.95767 1.02616 1.70038 1.33701 1.03879 1.53007 0.85066 0.79377 0.77726 0.77128 1.21327 1.22400 1.18945 1.22848 0.84898 0.95484 0.96300 1.22427 0.95383 0.94005 0.96572 1.21632 0.94141 1.00791 0.83195 1.21677 0.93015 0.99463 0.95662 0.89392 0.90556 0.90239 0.81097 0.83249 0.85892 0.84066 0.88095 0.86493 0.96021 0.88697 0.88144 0.96197 0.95564 0.94508 0.92348 0.92388 0.96785 0.88667 0.90164 0.88961 0.82776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.95 10.04 71.23 0.71 -0.24 16 2 C -0.14 -2.25 5.90 -19.78 -0.12 -2.37 16 3 C 0.08 1.53 10.86 84.69 0.92 2.45 16 4 N -0.51 -13.13 10.36 -195.85 -2.03 -15.16 16 5 C 0.08 1.93 10.86 84.67 0.92 2.85 16 6 C -0.12 -2.29 4.39 -19.77 -0.09 -2.38 16 7 C -0.09 -1.38 4.22 29.10 0.12 -1.26 16 8 C 0.52 11.70 7.70 87.66 0.68 12.37 16 9 O -0.58 -18.47 15.49 -3.03 -0.05 -18.52 16 10 N -0.61 -12.68 3.00 -816.99 -2.45 -15.14 16 11 C 0.12 1.89 6.53 86.50 0.57 2.45 16 12 C 0.03 0.76 4.65 86.54 0.40 1.16 16 13 N -0.51 -14.06 4.77 -874.93 -4.17 -18.23 16 14 C 0.06 2.27 4.05 46.67 0.19 2.46 16 15 C 0.13 6.26 6.81 86.44 0.59 6.85 16 16 N -0.64 -32.23 3.70 -716.54 -2.65 -34.88 16 17 C -0.23 -12.76 10.70 84.03 0.90 -11.86 16 18 H 0.09 4.58 7.83 -2.91 -0.02 4.55 16 19 C -0.07 -4.12 5.50 84.86 0.47 -3.66 16 20 N -0.96 -58.71 11.39 21.65 0.25 -58.46 16 21 Si 0.98 45.90 29.55 68.60 2.03 47.93 16 22 H -0.29 -13.18 7.11 99.48 0.71 -12.47 16 23 H -0.30 -14.15 7.11 99.48 0.71 -13.44 16 24 H -0.26 -11.62 7.11 99.48 0.71 -10.91 16 25 C 0.13 4.86 8.40 86.49 0.73 5.58 16 26 C 0.04 1.18 5.55 86.40 0.48 1.66 16 27 C 0.13 2.80 6.60 86.36 0.57 3.37 16 28 C -0.07 -1.23 9.55 22.47 0.21 -1.01 16 29 H 0.09 0.55 8.14 -2.39 -0.02 0.53 16 30 H 0.08 0.59 8.10 -2.39 -0.02 0.57 16 31 H 0.08 0.58 8.09 -2.39 -0.02 0.56 16 32 H 0.17 2.45 8.06 -2.91 -0.02 2.43 16 33 H 0.15 3.38 8.06 -2.91 -0.02 3.36 16 34 H 0.12 1.50 7.63 -2.39 -0.02 1.49 16 35 H 0.14 1.09 7.94 -2.39 -0.02 1.07 16 36 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 37 H 0.12 1.17 6.02 -2.39 -0.01 1.16 16 38 H 0.02 0.66 6.38 -2.39 -0.02 0.65 16 39 H 0.09 2.34 5.81 -2.39 -0.01 2.33 16 40 H 0.10 3.57 8.11 -2.39 -0.02 3.55 16 41 H 0.02 0.98 5.76 -2.39 -0.01 0.96 16 42 H 0.03 1.43 7.17 -2.39 -0.02 1.42 16 43 H 0.25 14.76 8.31 -92.71 -0.77 13.99 16 44 H 0.06 2.06 8.14 -2.39 -0.02 2.05 16 45 H 0.06 1.98 5.93 -2.38 -0.01 1.96 16 46 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 47 H 0.10 2.30 8.09 -2.39 -0.02 2.28 16 48 H 0.08 2.02 7.06 -2.39 -0.02 2.01 16 49 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 50 H 0.15 1.78 8.06 -2.91 -0.02 1.76 16 Total: -1.00 -78.89 395.00 0.11 -78.78 By element: Atomic # 1 Polarization: 14.32 SS G_CDS: 0.94 Total: 15.26 kcal Atomic # 6 Polarization: 10.17 SS G_CDS: 8.25 Total: 18.42 kcal Atomic # 7 Polarization: -130.81 SS G_CDS: -11.06 Total: -141.87 kcal Atomic # 8 Polarization: -18.47 SS G_CDS: -0.05 Total: -18.52 kcal Atomic # 14 Polarization: 45.90 SS G_CDS: 2.03 Total: 47.93 kcal Total: -78.89 0.11 -78.78 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000941502166.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.481 kcal (2) G-P(sol) polarization free energy of solvation -78.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.780 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds