Wall clock time and date at job start Wed Apr 1 2020 03:18:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38226 * 119.62020 * 2 1 4 4 C 1.38629 * 119.16385 * 179.75079 * 3 2 1 5 5 C 1.38675 * 118.41674 * 0.51141 * 4 3 2 6 6 C 1.50701 * 120.41533 * 179.78433 * 5 4 3 7 7 C 1.50700 * 109.47301 * 269.71625 * 6 5 4 8 8 O 1.21282 * 119.99768 * 0.02562 * 7 6 5 9 9 N 1.34772 * 119.99982 * 179.97438 * 7 6 5 10 10 C 1.47075 * 120.88032 * 180.02562 * 9 7 6 11 11 C 1.53241 * 108.52308 * 231.21201 * 10 9 7 12 12 N 1.46898 * 109.33951 * 306.17219 * 11 10 9 13 13 C 1.46898 * 111.00064 * 187.25568 * 12 11 10 14 14 C 1.53495 * 114.20715 * 180.02562 * 13 12 11 15 15 N 1.47066 * 87.98658 * 220.14321 * 14 13 12 16 16 C 1.36937 * 136.06113 * 206.85859 * 15 14 13 17 17 H 1.07995 * 120.00001 * 0.02562 * 16 15 14 18 18 C 1.38817 * 120.00320 * 179.97438 * 16 15 14 19 19 N 1.31620 * 119.99557 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 119.99975 * 180.02562 * 18 16 15 21 21 H 1.48495 * 109.47363 * 60.00463 * 20 18 16 22 22 H 1.48506 * 109.46719 * 180.02562 * 20 18 16 23 23 H 1.48502 * 109.47174 * 300.00290 * 20 18 16 24 24 C 1.47067 * 87.88528 * 27.11900 * 15 14 13 25 25 C 1.46895 * 111.27184 * 63.10496 * 12 11 10 26 26 C 1.47083 * 120.88438 * 0.03512 * 9 7 6 27 27 C 1.38182 * 119.16615 * 359.50760 * 5 4 3 28 28 N 1.31852 * 119.61839 * 180.02562 * 2 1 3 29 29 H 1.08996 * 109.47197 * 269.97634 * 1 2 3 30 30 H 1.09002 * 109.47142 * 29.98031 * 1 2 3 31 31 H 1.08998 * 109.47079 * 149.97683 * 1 2 3 32 32 H 1.08002 * 120.41725 * 0.03911 * 3 2 1 33 33 H 1.07998 * 120.79281 * 180.27328 * 4 3 2 34 34 H 1.09005 * 109.47099 * 149.72047 * 6 5 4 35 35 H 1.08997 * 109.47187 * 29.72437 * 6 5 4 36 36 H 1.08999 * 109.62826 * 111.50161 * 10 9 7 37 37 H 1.09002 * 109.63321 * 350.92462 * 10 9 7 38 38 H 1.09002 * 109.49164 * 186.20946 * 11 10 9 39 39 H 1.09002 * 109.49308 * 66.13262 * 11 10 9 40 40 H 1.09006 * 113.28003 * 313.06392 * 13 12 11 41 41 H 1.09005 * 113.46950 * 105.36887 * 14 13 12 42 42 H 1.08994 * 113.52293 * 334.93371 * 14 13 12 43 43 H 0.96999 * 119.99537 * 179.97438 * 19 18 16 44 44 H 1.09007 * 113.46858 * 87.65629 * 24 15 14 45 45 H 1.08993 * 113.47208 * 218.09965 * 24 15 14 46 46 H 1.08998 * 109.49572 * 56.85259 * 25 12 11 47 47 H 1.08992 * 109.49361 * 176.93859 * 25 12 11 48 48 H 1.09005 * 109.62160 * 248.49928 * 26 9 7 49 49 H 1.09000 * 109.62522 * 9.07498 * 26 9 7 50 50 H 1.07997 * 119.61746 * 180.25506 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1902 1.2016 0.0000 4 6 3.5764 1.1906 0.0053 5 6 4.2266 -0.0343 -0.0005 6 6 5.7323 -0.0988 -0.0001 7 6 6.2346 -0.1202 -1.4207 8 8 5.4475 -0.0859 -2.3428 9 7 7.5586 -0.1764 -1.6665 10 6 8.0701 -0.1976 -3.0453 11 6 9.0438 -1.3726 -3.1852 12 7 10.0737 -1.2778 -2.1420 13 6 11.1231 -2.2855 -2.3450 14 6 12.2397 -2.2523 -1.2924 15 7 13.2003 -2.4960 -2.3791 16 6 14.4389 -3.0692 -2.4902 17 1 14.9247 -3.4786 -1.6169 18 6 15.0697 -3.1251 -3.7255 19 7 14.4773 -2.6266 -4.7899 20 14 16.7590 -3.9077 -3.8770 21 1 16.6875 -5.3271 -3.4464 22 1 17.2104 -3.8410 -5.2903 23 1 17.7223 -3.1768 -3.0150 24 6 12.2480 -1.8471 -3.2929 25 6 9.4858 -1.3929 -0.8007 26 6 8.5302 -0.2183 -0.5631 27 6 3.4766 -1.1948 -0.0009 28 7 2.1586 -1.1462 -0.0005 29 1 -0.3633 -0.0004 1.0276 30 1 -0.3633 0.8902 -0.5135 31 1 -0.3633 -0.8898 -0.5142 32 1 1.6508 2.1373 0.0006 33 1 4.1366 2.1139 0.0098 34 1 6.0570 -1.0036 0.5138 35 1 6.1332 0.7747 0.5141 36 1 8.5904 0.7364 -3.2572 37 1 7.2411 -0.3242 -3.7416 38 1 9.5163 -1.3385 -4.1669 39 1 8.5000 -2.3108 -3.0753 40 1 10.7301 -3.2818 -2.5480 41 1 12.1824 -3.0689 -0.5727 42 1 12.3603 -1.2791 -0.8167 43 1 14.9183 -2.6653 -5.6531 44 1 12.3700 -0.7654 -3.3507 45 1 12.1975 -2.3191 -4.2741 46 1 8.9357 -2.3308 -0.7239 47 1 10.2787 -1.3735 -0.0532 48 1 9.0947 0.7138 -0.5368 49 1 8.0053 -0.3585 0.3818 50 1 3.9755 -2.1527 -0.0012 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000941668621.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:18:39 Heat of formation + Delta-G solvation = 74.676522 kcal Electronic energy + Delta-G solvation = -29467.039293 eV Core-core repulsion = 25496.460871 eV Total energy + Delta-G solvation = -3970.578422 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.86770 -40.03509 -38.73970 -36.90797 -34.42659 -33.93560 -32.56500 -32.00650 -31.41841 -30.14877 -28.20017 -26.78720 -25.84143 -24.91887 -23.85465 -23.22832 -22.80570 -22.05357 -21.05794 -19.22132 -18.95958 -17.46847 -17.02998 -16.76773 -16.62914 -16.04730 -15.54382 -15.40158 -15.04126 -14.96336 -14.79216 -14.69917 -14.31448 -13.97316 -13.75854 -13.55718 -13.33735 -13.24624 -12.71867 -12.66119 -12.57154 -12.41983 -12.35250 -12.13298 -11.85627 -11.63389 -11.49399 -11.33296 -11.12503 -11.00573 -10.80039 -10.67505 -10.17708 -10.08215 -9.92803 -9.78327 -9.71524 -9.22013 -9.03515 -8.87383 -8.79285 -8.05862 -6.90136 -5.78714 -3.11487 0.79013 1.02926 2.43756 2.79251 3.38434 3.42106 3.43917 3.50005 3.98833 4.02984 4.30925 4.37639 4.40360 4.47849 4.58222 4.67017 4.82509 4.89373 4.93798 5.04389 5.07684 5.16489 5.21494 5.23602 5.26775 5.29929 5.35851 5.42033 5.47162 5.51783 5.62611 5.67143 5.69214 5.79081 5.82882 5.89483 5.89679 5.95281 6.03647 6.31422 6.35762 6.43176 6.57646 6.61641 7.01404 7.21543 7.24796 7.26467 7.51947 7.64037 7.73268 7.95997 7.99019 9.01752 9.68074 10.61988 11.38787 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.039426 B = 0.001724 C = 0.001709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 710.024721 B =16236.588713 C =16377.055579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.123 3.877 3 C -0.171 4.171 4 C -0.058 4.058 5 C -0.122 4.122 6 C -0.097 4.097 7 C 0.516 3.484 8 O -0.538 6.538 9 N -0.611 5.611 10 C 0.117 3.883 11 C 0.044 3.956 12 N -0.522 5.522 13 C 0.019 3.981 14 C 0.128 3.872 15 N -0.610 5.610 16 C -0.218 4.218 17 H 0.081 0.919 18 C -0.007 4.007 19 N -0.919 5.919 20 Si 0.914 3.086 21 H -0.284 1.284 22 H -0.289 1.289 23 H -0.285 1.285 24 C 0.173 3.827 25 C 0.040 3.960 26 C 0.110 3.890 27 C 0.119 3.881 28 N -0.485 5.485 29 H 0.077 0.923 30 H 0.074 0.926 31 H 0.076 0.924 32 H 0.134 0.866 33 H 0.132 0.868 34 H 0.106 0.894 35 H 0.105 0.895 36 H 0.076 0.924 37 H 0.092 0.908 38 H 0.092 0.908 39 H 0.034 0.966 40 H 0.066 0.934 41 H 0.034 0.966 42 H 0.040 0.960 43 H 0.255 0.745 44 H 0.034 0.966 45 H 0.067 0.933 46 H 0.034 0.966 47 H 0.090 0.910 48 H 0.080 0.920 49 H 0.085 0.915 50 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.854 8.524 12.333 28.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.015 4.015 3 C -0.191 4.191 4 C -0.084 4.084 5 C -0.124 4.124 6 C -0.138 4.138 7 C 0.303 3.697 8 O -0.415 6.415 9 N -0.345 5.345 10 C -0.005 4.005 11 C -0.085 4.085 12 N -0.248 5.248 13 C -0.090 4.090 14 C 0.002 3.998 15 N -0.336 5.336 16 C -0.346 4.346 17 H 0.099 0.901 18 C -0.204 4.204 19 N -0.566 5.566 20 Si 0.744 3.256 21 H -0.211 1.211 22 H -0.215 1.215 23 H -0.211 1.211 24 C 0.047 3.953 25 C -0.089 4.089 26 C -0.013 4.013 27 C -0.038 4.038 28 N -0.194 5.194 29 H 0.095 0.905 30 H 0.093 0.907 31 H 0.095 0.905 32 H 0.152 0.848 33 H 0.150 0.850 34 H 0.124 0.876 35 H 0.123 0.877 36 H 0.094 0.906 37 H 0.110 0.890 38 H 0.110 0.890 39 H 0.052 0.948 40 H 0.083 0.917 41 H 0.053 0.947 42 H 0.057 0.943 43 H 0.065 0.935 44 H 0.052 0.948 45 H 0.086 0.914 46 H 0.052 0.948 47 H 0.109 0.891 48 H 0.098 0.902 49 H 0.103 0.897 50 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -24.218 8.098 11.606 28.050 hybrid contribution 1.347 -0.299 -0.045 1.380 sum -22.871 7.799 11.561 26.787 Atomic orbital electron populations 1.20708 0.88908 1.03510 1.02971 1.21305 0.97043 0.88442 0.94685 1.21905 0.94715 0.99270 1.03209 1.21417 0.94431 0.97665 0.94866 1.20275 0.95181 0.94631 1.02352 1.20620 0.92212 1.05536 0.95383 1.20449 0.81792 0.76343 0.91080 1.90722 1.54750 1.49768 1.46247 1.48222 1.05297 1.72891 1.08106 1.21760 0.97085 0.99219 0.82425 1.22422 0.92519 0.96454 0.97077 1.62137 1.11497 1.50098 1.01048 1.24073 0.89878 0.92617 1.02394 1.22411 0.87692 0.97705 0.92040 1.45356 1.17367 1.66353 1.04498 1.18852 0.91104 1.30371 0.94258 0.90150 1.24807 0.98873 1.01201 0.95500 1.69821 1.38098 1.49839 0.98803 0.86174 0.83583 0.79029 0.76808 1.21060 1.21505 1.21122 1.22035 0.82851 0.95720 0.94733 1.22440 0.97337 0.96195 0.92964 1.21961 0.90347 1.00066 0.88929 1.22555 0.89229 0.97806 0.94192 1.67521 1.09728 1.29404 1.12741 0.90464 0.90744 0.90465 0.84838 0.84966 0.87555 0.87657 0.90553 0.88970 0.89013 0.94808 0.91654 0.94740 0.94281 0.93547 0.94806 0.91435 0.94760 0.89131 0.90155 0.89698 0.83018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.68 10.17 36.01 0.37 -0.31 16 2 C 0.12 1.19 6.78 -82.59 -0.56 0.63 16 3 C -0.17 -1.44 9.74 -39.44 -0.38 -1.83 16 4 C -0.06 -0.51 9.86 -39.28 -0.39 -0.89 16 5 C -0.12 -1.15 4.39 -104.48 -0.46 -1.61 16 6 C -0.10 -0.73 4.22 -29.03 -0.12 -0.86 16 7 C 0.52 5.83 7.70 -10.99 -0.08 5.74 16 8 O -0.54 -8.25 15.49 5.56 0.09 -8.16 16 9 N -0.61 -6.61 3.01 -172.44 -0.52 -7.13 16 10 C 0.12 1.42 6.60 -3.60 -0.02 1.39 16 11 C 0.04 0.60 5.61 -3.70 -0.02 0.57 16 12 N -0.52 -7.60 4.62 -226.09 -1.05 -8.65 16 13 C 0.02 0.35 3.52 -67.59 -0.24 0.11 16 14 C 0.13 2.55 7.12 -8.51 -0.06 2.49 16 15 N -0.61 -15.57 3.78 -184.78 -0.70 -16.27 16 16 C -0.22 -6.11 10.75 -15.06 -0.16 -6.27 16 17 H 0.08 2.15 7.83 -52.49 -0.41 1.74 16 18 C -0.01 -0.20 5.50 -17.43 -0.10 -0.29 16 19 N -0.92 -27.20 11.51 55.49 0.64 -26.56 16 20 Si 0.91 21.98 29.55 -169.99 -5.02 16.95 16 21 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 22 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 23 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 24 C 0.17 4.02 7.22 -8.51 -0.06 3.96 16 25 C 0.04 0.45 5.47 -3.68 -0.02 0.43 16 26 C 0.11 0.96 6.51 -3.58 -0.02 0.94 16 27 C 0.12 1.26 10.86 -17.55 -0.19 1.07 16 28 N -0.48 -5.62 10.27 -9.47 -0.10 -5.71 16 29 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.07 0.35 8.08 -51.93 -0.42 -0.07 16 31 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.13 0.76 8.06 -52.49 -0.42 0.34 16 33 H 0.13 0.88 8.06 -52.49 -0.42 0.45 16 34 H 0.11 0.60 7.61 -51.93 -0.40 0.20 16 35 H 0.11 0.55 7.95 -51.93 -0.41 0.14 16 36 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.09 1.18 7.06 -51.93 -0.37 0.81 16 38 H 0.09 1.29 8.11 -51.93 -0.42 0.87 16 39 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.07 1.25 8.13 -51.93 -0.42 0.82 16 41 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.04 0.76 7.90 -51.93 -0.41 0.35 16 43 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 44 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 45 H 0.07 1.75 7.12 -51.93 -0.37 1.38 16 46 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 47 H 0.09 1.00 6.82 -51.93 -0.35 0.64 16 48 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 49 H 0.08 0.48 6.02 -51.93 -0.31 0.17 16 50 H 0.15 1.34 8.06 -52.49 -0.42 0.92 16 LS Contribution 401.84 15.07 6.06 6.06 Total: -1.00 -34.98 401.84 -11.21 -46.19 By element: Atomic # 1 Polarization: 6.10 SS G_CDS: -8.08 Total: -1.98 kcal Atomic # 6 Polarization: 7.80 SS G_CDS: -2.53 Total: 5.27 kcal Atomic # 7 Polarization: -62.60 SS G_CDS: -1.72 Total: -64.33 kcal Atomic # 8 Polarization: -8.25 SS G_CDS: 0.09 Total: -8.16 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -34.98 -11.21 -46.19 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000941668621.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.868 kcal (2) G-P(sol) polarization free energy of solvation -34.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.192 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds