Wall clock time and date at job start Wed Apr 1 2020 03:18:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38226 * 119.62020 * 2 1 4 4 C 1.38629 * 119.16385 * 179.75079 * 3 2 1 5 5 C 1.38675 * 118.41674 * 0.51141 * 4 3 2 6 6 C 1.50701 * 120.41533 * 179.78433 * 5 4 3 7 7 C 1.50700 * 109.47301 * 269.71625 * 6 5 4 8 8 O 1.21282 * 119.99768 * 0.02562 * 7 6 5 9 9 N 1.34772 * 119.99982 * 179.97438 * 7 6 5 10 10 C 1.47075 * 120.88032 * 180.02562 * 9 7 6 11 11 C 1.53241 * 108.52308 * 231.21201 * 10 9 7 12 12 N 1.46898 * 109.33951 * 306.17219 * 11 10 9 13 13 C 1.46898 * 111.00064 * 187.25568 * 12 11 10 14 14 C 1.53495 * 114.20715 * 180.02562 * 13 12 11 15 15 N 1.47066 * 87.98658 * 220.14321 * 14 13 12 16 16 C 1.36937 * 136.06113 * 206.85859 * 15 14 13 17 17 H 1.07995 * 120.00001 * 0.02562 * 16 15 14 18 18 C 1.38817 * 120.00320 * 179.97438 * 16 15 14 19 19 N 1.31620 * 119.99557 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 119.99975 * 180.02562 * 18 16 15 21 21 H 1.48495 * 109.47363 * 60.00463 * 20 18 16 22 22 H 1.48506 * 109.46719 * 180.02562 * 20 18 16 23 23 H 1.48502 * 109.47174 * 300.00290 * 20 18 16 24 24 C 1.47067 * 87.88528 * 27.11900 * 15 14 13 25 25 C 1.46895 * 111.27184 * 63.10496 * 12 11 10 26 26 C 1.47083 * 120.88438 * 0.03512 * 9 7 6 27 27 C 1.38182 * 119.16615 * 359.50760 * 5 4 3 28 28 N 1.31852 * 119.61839 * 180.02562 * 2 1 3 29 29 H 1.08996 * 109.47197 * 269.97634 * 1 2 3 30 30 H 1.09002 * 109.47142 * 29.98031 * 1 2 3 31 31 H 1.08998 * 109.47079 * 149.97683 * 1 2 3 32 32 H 1.08002 * 120.41725 * 0.03911 * 3 2 1 33 33 H 1.07998 * 120.79281 * 180.27328 * 4 3 2 34 34 H 1.09005 * 109.47099 * 149.72047 * 6 5 4 35 35 H 1.08997 * 109.47187 * 29.72437 * 6 5 4 36 36 H 1.08999 * 109.62826 * 111.50161 * 10 9 7 37 37 H 1.09002 * 109.63321 * 350.92462 * 10 9 7 38 38 H 1.09002 * 109.49164 * 186.20946 * 11 10 9 39 39 H 1.09002 * 109.49308 * 66.13262 * 11 10 9 40 40 H 1.09006 * 113.28003 * 313.06392 * 13 12 11 41 41 H 1.09005 * 113.46950 * 105.36887 * 14 13 12 42 42 H 1.08994 * 113.52293 * 334.93371 * 14 13 12 43 43 H 0.96999 * 119.99537 * 179.97438 * 19 18 16 44 44 H 1.09007 * 113.46858 * 87.65629 * 24 15 14 45 45 H 1.08993 * 113.47208 * 218.09965 * 24 15 14 46 46 H 1.08998 * 109.49572 * 56.85259 * 25 12 11 47 47 H 1.08992 * 109.49361 * 176.93859 * 25 12 11 48 48 H 1.09005 * 109.62160 * 248.49928 * 26 9 7 49 49 H 1.09000 * 109.62522 * 9.07498 * 26 9 7 50 50 H 1.07997 * 119.61746 * 180.25506 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1902 1.2016 0.0000 4 6 3.5764 1.1906 0.0053 5 6 4.2266 -0.0343 -0.0005 6 6 5.7323 -0.0988 -0.0001 7 6 6.2346 -0.1202 -1.4207 8 8 5.4475 -0.0859 -2.3428 9 7 7.5586 -0.1764 -1.6665 10 6 8.0701 -0.1976 -3.0453 11 6 9.0438 -1.3726 -3.1852 12 7 10.0737 -1.2778 -2.1420 13 6 11.1231 -2.2855 -2.3450 14 6 12.2397 -2.2523 -1.2924 15 7 13.2003 -2.4960 -2.3791 16 6 14.4389 -3.0692 -2.4902 17 1 14.9247 -3.4786 -1.6169 18 6 15.0697 -3.1251 -3.7255 19 7 14.4773 -2.6266 -4.7899 20 14 16.7590 -3.9077 -3.8770 21 1 16.6875 -5.3271 -3.4464 22 1 17.2104 -3.8410 -5.2903 23 1 17.7223 -3.1768 -3.0150 24 6 12.2480 -1.8471 -3.2929 25 6 9.4858 -1.3929 -0.8007 26 6 8.5302 -0.2183 -0.5631 27 6 3.4766 -1.1948 -0.0009 28 7 2.1586 -1.1462 -0.0005 29 1 -0.3633 -0.0004 1.0276 30 1 -0.3633 0.8902 -0.5135 31 1 -0.3633 -0.8898 -0.5142 32 1 1.6508 2.1373 0.0006 33 1 4.1366 2.1139 0.0098 34 1 6.0570 -1.0036 0.5138 35 1 6.1332 0.7747 0.5141 36 1 8.5904 0.7364 -3.2572 37 1 7.2411 -0.3242 -3.7416 38 1 9.5163 -1.3385 -4.1669 39 1 8.5000 -2.3108 -3.0753 40 1 10.7301 -3.2818 -2.5480 41 1 12.1824 -3.0689 -0.5727 42 1 12.3603 -1.2791 -0.8167 43 1 14.9183 -2.6653 -5.6531 44 1 12.3700 -0.7654 -3.3507 45 1 12.1975 -2.3191 -4.2741 46 1 8.9357 -2.3308 -0.7239 47 1 10.2787 -1.3735 -0.0532 48 1 9.0947 0.7138 -0.5368 49 1 8.0053 -0.3585 0.3818 50 1 3.9755 -2.1527 -0.0012 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000941668621.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:18:38 Heat of formation + Delta-G solvation = 51.034138 kcal Electronic energy + Delta-G solvation = -29468.064504 eV Core-core repulsion = 25496.460871 eV Total energy + Delta-G solvation = -3971.603633 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.63202 -40.93437 -40.10140 -38.15246 -35.26130 -35.03144 -33.89575 -33.20923 -32.35324 -30.83385 -29.77282 -27.96983 -26.79898 -26.47101 -24.61153 -24.41905 -24.25179 -22.88808 -21.98492 -20.80432 -19.89652 -18.79630 -18.27790 -17.69698 -17.33972 -16.98909 -16.80480 -16.64520 -16.32721 -16.02164 -15.80713 -15.77169 -15.36244 -15.25238 -14.63952 -14.40714 -14.37086 -14.16486 -13.86307 -13.80607 -13.38484 -13.31334 -13.21107 -13.14851 -12.98654 -12.93288 -12.82131 -12.63314 -12.54010 -12.32990 -12.21724 -12.14730 -11.79275 -11.71294 -11.01471 -10.96049 -10.85101 -10.65980 -10.39615 -9.80797 -9.68846 -9.24043 -8.92881 -7.90992 -5.25157 0.13334 0.37733 1.46021 1.49869 1.56004 1.61163 1.96667 2.45598 2.80922 2.89781 3.30962 3.39695 3.52364 3.62193 3.66620 3.74823 3.84412 3.98344 4.03992 4.06136 4.10306 4.21610 4.27891 4.37095 4.41878 4.44077 4.55925 4.56327 4.70568 4.71814 4.73966 4.77609 4.79366 4.84775 4.88628 4.89945 4.91492 4.98670 5.13748 5.17625 5.21954 5.26771 5.32914 5.37620 5.44534 5.50907 5.81949 5.90665 6.13759 6.16188 6.44555 6.89866 7.06084 7.15148 7.59528 8.60425 9.26628 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.039426 B = 0.001724 C = 0.001709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 710.024721 B =16236.588713 C =16377.055579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.102 3.898 3 C -0.175 4.175 4 C -0.067 4.067 5 C -0.130 4.130 6 C -0.089 4.089 7 C 0.515 3.485 8 O -0.585 6.585 9 N -0.611 5.611 10 C 0.125 3.875 11 C 0.049 3.951 12 N -0.526 5.526 13 C 0.054 3.946 14 C 0.136 3.864 15 N -0.643 5.643 16 C -0.230 4.230 17 H 0.089 0.911 18 C -0.069 4.069 19 N -0.954 5.954 20 Si 0.982 3.018 21 H -0.275 1.275 22 H -0.296 1.296 23 H -0.275 1.275 24 C 0.171 3.829 25 C 0.036 3.964 26 C 0.114 3.886 27 C 0.097 3.903 28 N -0.518 5.518 29 H 0.089 0.911 30 H 0.093 0.907 31 H 0.067 0.933 32 H 0.160 0.840 33 H 0.155 0.845 34 H 0.132 0.868 35 H 0.139 0.861 36 H 0.079 0.921 37 H 0.081 0.919 38 H 0.076 0.924 39 H 0.030 0.970 40 H 0.058 0.942 41 H 0.052 0.948 42 H 0.055 0.945 43 H 0.248 0.752 44 H 0.020 0.980 45 H 0.029 0.971 46 H 0.037 0.963 47 H 0.101 0.899 48 H 0.088 0.912 49 H 0.127 0.873 50 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.365 9.504 15.183 30.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.035 4.035 3 C -0.194 4.194 4 C -0.093 4.093 5 C -0.133 4.133 6 C -0.128 4.128 7 C 0.305 3.695 8 O -0.465 6.465 9 N -0.344 5.344 10 C 0.002 3.998 11 C -0.080 4.080 12 N -0.252 5.252 13 C -0.055 4.055 14 C 0.011 3.989 15 N -0.370 5.370 16 C -0.358 4.358 17 H 0.106 0.894 18 C -0.262 4.262 19 N -0.603 5.603 20 Si 0.810 3.190 21 H -0.200 1.200 22 H -0.222 1.222 23 H -0.201 1.201 24 C 0.045 3.955 25 C -0.092 4.092 26 C -0.008 4.008 27 C -0.060 4.060 28 N -0.228 5.228 29 H 0.108 0.892 30 H 0.112 0.888 31 H 0.086 0.914 32 H 0.178 0.822 33 H 0.172 0.828 34 H 0.150 0.850 35 H 0.157 0.843 36 H 0.097 0.903 37 H 0.100 0.900 38 H 0.095 0.905 39 H 0.048 0.952 40 H 0.076 0.924 41 H 0.070 0.930 42 H 0.073 0.927 43 H 0.057 0.943 44 H 0.038 0.962 45 H 0.048 0.952 46 H 0.056 0.944 47 H 0.119 0.881 48 H 0.106 0.894 49 H 0.145 0.855 50 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -24.740 9.083 14.524 30.092 hybrid contribution 1.425 -0.565 -0.908 1.782 sum -23.315 8.518 13.616 28.312 Atomic orbital electron populations 1.20775 0.87225 1.03975 1.03896 1.21835 0.98448 0.88562 0.94650 1.22253 0.95042 0.99911 1.02209 1.21808 0.94880 0.98375 0.94197 1.20475 0.96228 0.94474 1.02073 1.20692 0.90936 1.08275 0.92920 1.21105 0.81269 0.74963 0.92208 1.90710 1.55861 1.51892 1.48070 1.48310 1.05788 1.72435 1.07885 1.21537 0.96192 0.98407 0.83671 1.22354 0.92315 0.97058 0.96233 1.62042 1.11549 1.48357 1.03214 1.23450 0.90009 0.92761 0.99261 1.22505 0.86137 0.98803 0.91498 1.45735 1.17505 1.66510 1.07261 1.19303 0.92157 1.29796 0.94550 0.89378 1.25695 1.02758 1.02413 0.95291 1.70032 1.39560 1.51696 0.98989 0.85099 0.79131 0.78474 0.76306 1.20033 1.22174 1.20115 1.21922 0.85250 0.94365 0.93988 1.22613 0.98191 0.97734 0.90703 1.22145 0.89771 0.99126 0.89765 1.22806 0.89361 0.98802 0.94996 1.67505 1.10535 1.30775 1.14000 0.89231 0.88814 0.91434 0.82231 0.82772 0.85039 0.84348 0.90317 0.90029 0.90529 0.95212 0.92427 0.93014 0.92735 0.94301 0.96186 0.95205 0.94439 0.88103 0.89385 0.85477 0.82496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.22 10.17 71.24 0.72 -0.50 16 2 C 0.10 1.89 6.78 42.55 0.29 2.18 16 3 C -0.17 -2.62 9.74 22.36 0.22 -2.41 16 4 C -0.07 -1.01 9.86 22.47 0.22 -0.79 16 5 C -0.13 -2.19 4.39 -19.77 -0.09 -2.27 16 6 C -0.09 -1.01 4.22 29.10 0.12 -0.89 16 7 C 0.51 10.44 7.70 87.66 0.68 11.12 16 8 O -0.59 -17.54 15.49 -3.03 -0.05 -17.59 16 9 N -0.61 -11.68 3.01 -817.86 -2.46 -14.14 16 10 C 0.13 2.93 6.60 86.35 0.57 3.50 16 11 C 0.05 1.32 5.61 86.38 0.48 1.80 16 12 N -0.53 -14.60 4.62 -869.23 -4.02 -18.62 16 13 C 0.05 1.96 3.52 45.39 0.16 2.12 16 14 C 0.14 5.18 7.12 83.18 0.59 5.78 16 15 N -0.64 -33.07 3.78 -738.53 -2.79 -35.86 16 16 C -0.23 -12.91 10.75 84.03 0.90 -12.01 16 17 H 0.09 4.65 7.83 -2.91 -0.02 4.63 16 18 C -0.07 -3.93 5.50 84.86 0.47 -3.46 16 19 N -0.95 -58.36 11.51 21.65 0.25 -58.11 16 20 Si 0.98 45.63 29.55 68.60 2.03 47.66 16 21 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 22 H -0.30 -13.88 7.11 99.48 0.71 -13.18 16 23 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 24 C 0.17 8.20 7.22 83.18 0.60 8.80 16 25 C 0.04 0.69 5.47 86.40 0.47 1.16 16 26 C 0.11 1.52 6.51 86.36 0.56 2.08 16 27 C 0.10 1.98 10.86 84.67 0.92 2.90 16 28 N -0.52 -11.96 10.27 -183.89 -1.89 -13.85 16 29 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.09 0.72 8.08 -2.39 -0.02 0.70 16 31 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.16 1.40 8.06 -2.91 -0.02 1.37 16 33 H 0.15 1.53 8.06 -2.91 -0.02 1.51 16 34 H 0.13 0.87 7.61 -2.38 -0.02 0.86 16 35 H 0.14 0.70 7.95 -2.39 -0.02 0.68 16 36 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 37 H 0.08 2.11 7.06 -2.39 -0.02 2.10 16 38 H 0.08 2.26 8.11 -2.39 -0.02 2.24 16 39 H 0.03 0.82 8.14 -2.39 -0.02 0.80 16 40 H 0.06 2.19 8.13 -2.38 -0.02 2.17 16 41 H 0.05 1.81 8.14 -2.38 -0.02 1.79 16 42 H 0.06 1.96 7.90 -2.39 -0.02 1.94 16 43 H 0.25 14.78 8.31 -92.71 -0.77 14.01 16 44 H 0.02 1.01 8.14 -2.38 -0.02 0.99 16 45 H 0.03 1.63 7.12 -2.39 -0.02 1.61 16 46 H 0.04 0.73 8.14 -2.39 -0.02 0.71 16 47 H 0.10 1.80 6.82 -2.39 -0.02 1.78 16 48 H 0.09 1.14 8.14 -2.38 -0.02 1.12 16 49 H 0.13 0.69 6.02 -2.39 -0.01 0.68 16 50 H 0.16 2.73 8.06 -2.91 -0.02 2.71 16 Total: -1.00 -79.56 401.84 -0.12 -79.67 By element: Atomic # 1 Polarization: 10.79 SS G_CDS: 0.92 Total: 11.71 kcal Atomic # 6 Polarization: 11.24 SS G_CDS: 7.89 Total: 19.13 kcal Atomic # 7 Polarization: -129.67 SS G_CDS: -10.91 Total: -140.58 kcal Atomic # 8 Polarization: -17.54 SS G_CDS: -0.05 Total: -17.59 kcal Atomic # 14 Polarization: 45.63 SS G_CDS: 2.03 Total: 47.66 kcal Total: -79.56 -0.12 -79.67 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000941668621.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.707 kcal (2) G-P(sol) polarization free energy of solvation -79.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.673 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds