Wall clock time and date at job start Wed Apr 1 2020 03:32:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38551 * 120.01011 * 2 1 4 4 C 1.40080 * 117.81348 * 180.02562 * 3 2 1 5 5 C 1.48134 * 121.14307 * 179.72629 * 4 3 2 6 6 O 1.21513 * 120.00029 * 126.41022 * 5 4 3 7 7 N 1.34781 * 120.00258 * 306.40637 * 5 4 3 8 8 C 1.43505 * 122.54203 * 3.82517 * 7 5 4 9 9 C 1.52199 * 113.97103 * 122.91131 * 8 7 5 10 10 C 1.51157 * 111.76940 * 82.86127 * 9 8 7 11 11 H 1.09004 * 110.22543 * 33.57699 * 10 9 8 12 12 C 1.53402 * 110.93240 * 156.63653 * 10 9 8 13 13 N 1.46624 * 108.10271 * 102.75242 * 12 10 9 14 14 C 1.36943 * 125.31853 * 178.61893 * 13 12 10 15 15 H 1.07995 * 119.99688 * 350.56326 * 14 13 12 16 16 C 1.38808 * 119.99627 * 170.56252 * 14 13 12 17 17 N 1.31626 * 120.00115 * 3.90193 * 16 14 13 18 18 Si 1.86800 * 119.99816 * 183.89758 * 16 14 13 19 19 H 1.48508 * 109.46953 * 94.99724 * 18 16 14 20 20 H 1.48503 * 109.46965 * 214.99569 * 18 16 14 21 21 H 1.48492 * 109.47271 * 334.99837 * 18 16 14 22 22 C 1.46655 * 109.35762 * 358.63423 * 13 12 10 23 23 C 1.54052 * 106.94028 * 18.30837 * 22 13 12 24 24 H 1.08999 * 111.48049 * 91.53346 * 23 22 13 25 25 C 1.51844 * 109.44628 * 214.13107 * 23 22 13 26 26 C 1.49541 * 122.54978 * 184.11740 * 7 5 4 27 27 C 1.39762 * 117.70838 * 0.02562 * 4 3 2 28 28 C 1.50700 * 120.17322 * 179.97438 * 27 4 3 29 29 N 1.31894 * 119.65901 * 359.97438 * 27 4 3 30 30 N 1.28283 * 122.32331 * 0.02562 * 29 27 4 31 31 H 1.08998 * 109.47032 * 90.00466 * 1 2 3 32 32 H 1.08998 * 109.46957 * 210.00350 * 1 2 3 33 33 H 1.09003 * 109.47588 * 330.00113 * 1 2 3 34 34 H 1.07997 * 121.09631 * 0.04043 * 3 2 1 35 35 H 1.09004 * 108.52984 * 244.18635 * 8 7 5 36 36 H 1.09005 * 108.52717 * 1.71630 * 8 7 5 37 37 H 1.09004 * 109.13498 * 322.23190 * 9 8 7 38 38 H 1.08998 * 108.91327 * 203.35583 * 9 8 7 39 39 H 1.09007 * 109.74372 * 222.41668 * 12 10 9 40 40 H 1.08991 * 109.74767 * 343.07721 * 12 10 9 41 41 H 0.96997 * 119.99474 * 179.97438 * 17 16 14 42 42 H 1.09001 * 109.96826 * 258.93773 * 22 13 12 43 43 H 1.08994 * 109.96849 * 137.67714 * 22 13 12 44 44 H 1.09001 * 109.01309 * 54.29667 * 25 23 22 45 45 H 1.08995 * 108.94964 * 295.46419 * 25 23 22 46 46 H 1.09006 * 110.26704 * 9.14119 * 26 7 5 47 47 H 1.08998 * 110.27391 * 131.09453 * 26 7 5 48 48 H 1.09002 * 109.47172 * 94.35848 * 28 27 4 49 49 H 1.09002 * 109.47426 * 214.36352 * 28 27 4 50 50 H 1.09003 * 109.46848 * 334.36786 * 28 27 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2000 1.1998 0.0000 4 6 3.5997 1.1461 -0.0006 5 6 4.4139 2.3836 -0.0066 6 8 5.2701 2.5518 0.8390 7 7 4.2050 3.3231 -0.9502 8 6 3.1571 3.2185 -1.9251 9 6 2.1923 4.3956 -1.9245 10 6 2.7280 5.5599 -2.7259 11 1 3.3139 5.1980 -3.5708 12 6 1.5872 6.4673 -3.2039 13 7 1.5597 7.6554 -2.3450 14 6 0.6947 8.7087 -2.4782 15 1 0.0614 8.7804 -3.3500 16 6 0.6320 9.6840 -1.4925 17 7 1.4571 9.6384 -0.4680 18 14 -0.6233 11.0615 -1.6201 19 1 -1.8356 10.7000 -0.8423 20 1 -0.0408 12.3141 -1.0752 21 1 -0.9915 11.2653 -3.0442 22 6 2.6036 7.5396 -1.3215 23 6 3.6009 6.4747 -1.8160 24 1 4.4124 6.9234 -2.3890 25 6 4.1499 5.7056 -0.6274 26 6 5.0516 4.5505 -1.0648 27 6 4.2017 -0.1153 -0.0016 28 6 5.7037 -0.2377 -0.0028 29 7 3.4484 -1.1979 -0.0016 30 7 2.1668 -1.1418 -0.0010 31 1 -0.3633 -0.0001 -1.0276 32 1 -0.3633 -0.8899 0.5139 33 1 -0.3634 0.8900 0.5138 34 1 1.6781 2.1453 0.0007 35 1 3.6100 3.1383 -2.9133 36 1 2.5934 2.3059 -1.7311 37 1 2.0243 4.7194 -0.8973 38 1 1.2436 4.0750 -2.3549 39 1 1.7616 6.7645 -4.2380 40 1 0.6382 5.9365 -3.1286 41 1 1.4134 10.3202 0.2205 42 1 2.1635 7.2262 -0.3748 43 1 3.1113 8.4961 -1.1978 44 1 3.3177 5.3063 -0.0477 45 1 4.7247 6.3867 0.0000 46 1 5.9162 4.4758 -0.4052 47 1 5.3754 4.6910 -2.0960 48 1 6.0603 -0.3456 1.0215 49 1 5.9965 -1.1125 -0.5835 50 1 6.1407 0.6564 -0.4473 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000946607949.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:32:57 Heat of formation + Delta-G solvation = 53.930091 kcal Electronic energy + Delta-G solvation = -31261.250834 eV Core-core repulsion = 27289.772779 eV Total energy + Delta-G solvation = -3971.478055 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.77625 -40.27343 -38.66664 -36.16194 -34.81242 -34.11488 -33.12321 -32.31049 -30.80439 -30.21341 -27.79131 -27.53859 -27.13541 -25.41196 -24.13962 -23.41024 -23.12412 -22.30973 -20.21948 -19.86474 -18.44368 -18.10219 -17.69746 -16.94503 -16.48986 -16.13151 -15.67110 -15.36027 -15.05739 -14.72925 -14.33244 -14.23274 -13.85846 -13.77122 -13.70644 -13.50759 -13.18335 -13.00943 -12.91084 -12.72061 -12.66979 -12.47786 -12.35300 -11.87050 -11.55330 -11.34686 -11.29398 -11.23167 -11.02992 -10.87316 -10.75107 -10.70268 -10.40138 -10.11166 -10.06429 -9.83039 -9.79241 -9.74903 -9.71255 -9.57500 -8.84472 -8.60328 -6.83207 -5.76853 -3.12260 0.13375 0.49603 2.26748 2.59923 3.12981 3.35724 3.41354 3.43245 3.58084 3.92050 4.00530 4.14413 4.44874 4.45779 4.60949 4.70337 4.86904 4.91349 4.96967 5.10602 5.17746 5.20042 5.20927 5.27016 5.29909 5.36772 5.42162 5.43609 5.47823 5.54082 5.64537 5.69255 5.72308 5.74619 5.86038 5.90734 5.95878 6.05752 6.20509 6.24892 6.31414 6.47367 6.54148 6.58922 6.69960 6.94126 7.18927 7.53943 7.56749 7.76281 7.78574 8.26634 8.35783 9.18479 9.79242 10.44359 11.33231 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.016599 B = 0.002812 C = 0.002584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1686.406261 B = 9953.375321 C =10832.785688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.063 3.937 3 C -0.083 4.083 4 C -0.117 4.117 5 C 0.571 3.429 6 O -0.520 6.520 7 N -0.596 5.596 8 C 0.097 3.903 9 C -0.127 4.127 10 C -0.091 4.091 11 H 0.067 0.933 12 C 0.143 3.857 13 N -0.602 5.602 14 C -0.230 4.230 15 H 0.076 0.924 16 C -0.006 4.006 17 N -0.919 5.919 18 Si 0.911 3.089 19 H -0.289 1.289 20 H -0.291 1.291 21 H -0.281 1.281 22 C 0.180 3.820 23 C -0.111 4.111 24 H 0.068 0.932 25 C -0.126 4.126 26 C 0.116 3.884 27 C 0.105 3.895 28 C -0.100 4.100 29 N -0.238 5.238 30 N -0.229 5.229 31 H 0.087 0.913 32 H 0.084 0.916 33 H 0.083 0.917 34 H 0.159 0.841 35 H 0.067 0.933 36 H 0.073 0.927 37 H 0.078 0.922 38 H 0.074 0.926 39 H 0.019 0.981 40 H 0.021 0.979 41 H 0.252 0.748 42 H 0.022 0.978 43 H 0.072 0.928 44 H 0.074 0.926 45 H 0.070 0.930 46 H 0.090 0.910 47 H 0.082 0.918 48 H 0.091 0.909 49 H 0.084 0.916 50 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.716 -18.092 -1.712 18.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.081 4.081 3 C -0.113 4.113 4 C -0.132 4.132 5 C 0.357 3.643 6 O -0.396 6.396 7 N -0.329 5.329 8 C -0.028 4.028 9 C -0.165 4.165 10 C -0.110 4.110 11 H 0.085 0.915 12 C 0.017 3.983 13 N -0.328 5.328 14 C -0.358 4.358 15 H 0.094 0.906 16 C -0.203 4.203 17 N -0.566 5.566 18 Si 0.741 3.259 19 H -0.216 1.216 20 H -0.217 1.217 21 H -0.206 1.206 22 C 0.055 3.945 23 C -0.130 4.130 24 H 0.086 0.914 25 C -0.164 4.164 26 C -0.005 4.005 27 C -0.040 4.040 28 C -0.158 4.158 29 N -0.080 5.080 30 N -0.072 5.072 31 H 0.106 0.894 32 H 0.103 0.897 33 H 0.102 0.898 34 H 0.177 0.823 35 H 0.085 0.915 36 H 0.091 0.909 37 H 0.097 0.903 38 H 0.093 0.907 39 H 0.037 0.963 40 H 0.039 0.961 41 H 0.063 0.937 42 H 0.040 0.960 43 H 0.090 0.910 44 H 0.092 0.908 45 H 0.089 0.911 46 H 0.109 0.891 47 H 0.101 0.899 48 H 0.110 0.890 49 H 0.103 0.897 50 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 5.057 -19.480 -1.134 20.157 hybrid contribution -0.807 2.433 -0.070 2.565 sum 4.249 -17.047 -1.204 17.609 Atomic orbital electron populations 1.20726 0.86743 1.04478 1.04059 1.22882 0.99407 0.89762 0.96091 1.22601 0.93030 1.00840 0.94805 1.21102 0.94747 0.95532 1.01777 1.17781 0.83115 0.81956 0.81490 1.90820 1.33848 1.78385 1.36566 1.47968 1.32093 1.21911 1.30887 1.21133 0.89743 0.99608 0.92266 1.21581 0.97751 0.94344 1.02862 1.21781 0.97211 0.94725 0.97321 0.91497 1.21106 0.94725 0.88387 0.94104 1.44177 1.37675 1.17447 1.33480 1.19037 1.14123 0.99315 1.03337 0.90600 1.24840 0.99362 0.99504 0.96557 1.69951 1.38376 1.35853 1.12457 0.86119 0.80929 0.81406 0.77439 1.21609 1.21718 1.20613 1.21180 0.87178 0.95678 0.90472 1.22467 0.98304 0.97097 0.95172 0.91351 1.21858 0.99468 0.96305 0.98804 1.22412 0.93803 0.81900 1.02352 1.22960 0.99377 0.88521 0.93121 1.20726 0.86733 1.03916 1.04436 1.73016 0.99069 1.26079 1.09859 1.72807 1.01623 1.24908 1.07859 0.89438 0.89672 0.89829 0.82322 0.91509 0.90893 0.90326 0.90714 0.96266 0.96085 0.93732 0.95997 0.91030 0.90763 0.91133 0.89140 0.89932 0.89011 0.89719 0.90210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.68 10.19 36.01 0.37 -0.32 16 2 C 0.06 0.63 6.86 -82.46 -0.57 0.07 16 3 C -0.08 -0.84 7.37 -38.78 -0.29 -1.12 16 4 C -0.12 -1.36 5.04 -104.57 -0.53 -1.89 16 5 C 0.57 7.30 6.29 -12.20 -0.08 7.22 16 6 O -0.52 -8.06 15.76 5.35 0.08 -7.97 16 7 N -0.60 -6.91 2.61 -175.02 -0.46 -7.36 16 8 C 0.10 0.99 5.24 -6.04 -0.03 0.95 16 9 C -0.13 -1.57 4.79 -28.07 -0.13 -1.71 16 10 C -0.09 -1.35 2.79 -89.86 -0.25 -1.60 16 11 H 0.07 0.86 7.67 -51.93 -0.40 0.46 16 12 C 0.14 2.73 6.82 -3.77 -0.03 2.71 16 13 N -0.60 -14.60 3.38 -172.12 -0.58 -15.18 16 14 C -0.23 -6.21 10.23 -15.06 -0.15 -6.36 16 15 H 0.08 1.99 7.83 -52.49 -0.41 1.58 16 16 C -0.01 -0.17 5.49 -17.43 -0.10 -0.27 16 17 N -0.92 -26.22 10.32 55.49 0.57 -25.65 16 18 Si 0.91 21.60 29.56 -169.99 -5.02 16.57 16 19 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 20 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 21 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 22 C 0.18 4.07 4.92 -3.41 -0.02 4.06 16 23 C -0.11 -1.83 2.94 -89.18 -0.26 -2.09 16 24 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 25 C -0.13 -1.79 4.50 -27.36 -0.12 -1.92 16 26 C 0.12 1.36 6.15 -2.39 -0.01 1.35 16 27 C 0.10 1.24 6.91 -82.00 -0.57 0.67 16 28 C -0.10 -0.96 9.52 36.01 0.34 -0.61 16 29 N -0.24 -3.08 11.42 33.81 0.39 -2.69 16 30 N -0.23 -2.85 11.40 33.57 0.38 -2.47 16 31 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.08 0.45 8.09 -51.93 -0.42 0.03 16 34 H 0.16 1.35 7.44 -52.49 -0.39 0.96 16 35 H 0.07 0.63 7.68 -51.93 -0.40 0.23 16 36 H 0.07 0.67 4.41 -51.93 -0.23 0.44 16 37 H 0.08 1.13 5.87 -51.93 -0.30 0.83 16 38 H 0.07 0.85 7.53 -51.93 -0.39 0.46 16 39 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 40 H 0.02 0.40 7.40 -51.93 -0.38 0.02 16 41 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 42 H 0.02 0.55 7.58 -51.93 -0.39 0.16 16 43 H 0.07 1.87 6.73 -51.93 -0.35 1.52 16 44 H 0.07 1.15 5.47 -51.93 -0.28 0.87 16 45 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 46 H 0.09 1.08 7.34 -51.93 -0.38 0.70 16 47 H 0.08 0.86 7.82 -51.93 -0.41 0.45 16 48 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 49 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 50 H 0.08 0.78 6.69 -51.93 -0.35 0.43 16 LS Contribution 382.64 15.07 5.77 5.77 Total: -1.00 -32.16 382.64 -8.87 -41.04 By element: Atomic # 1 Polarization: 6.40 SS G_CDS: -7.58 Total: -1.19 kcal Atomic # 6 Polarization: 1.56 SS G_CDS: -2.42 Total: -0.86 kcal Atomic # 7 Polarization: -53.66 SS G_CDS: 0.30 Total: -53.35 kcal Atomic # 8 Polarization: -8.06 SS G_CDS: 0.08 Total: -7.97 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -32.16 -8.87 -41.04 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000946607949.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.966 kcal (2) G-P(sol) polarization free energy of solvation -32.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.035 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds