Wall clock time and date at job start Wed Apr 1 2020 03:32:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38551 * 120.01011 * 2 1 4 4 C 1.40080 * 117.81348 * 180.02562 * 3 2 1 5 5 C 1.48134 * 121.14307 * 179.72629 * 4 3 2 6 6 O 1.21513 * 120.00029 * 126.41022 * 5 4 3 7 7 N 1.34781 * 120.00258 * 306.40637 * 5 4 3 8 8 C 1.43505 * 122.54203 * 3.82517 * 7 5 4 9 9 C 1.52199 * 113.97103 * 122.91131 * 8 7 5 10 10 C 1.51157 * 111.76940 * 82.86127 * 9 8 7 11 11 H 1.09004 * 110.22543 * 33.57699 * 10 9 8 12 12 C 1.53402 * 110.93240 * 156.63653 * 10 9 8 13 13 N 1.46624 * 108.10271 * 102.75242 * 12 10 9 14 14 C 1.36943 * 125.31853 * 178.61893 * 13 12 10 15 15 H 1.07995 * 119.99688 * 350.56326 * 14 13 12 16 16 C 1.38808 * 119.99627 * 170.56252 * 14 13 12 17 17 N 1.31626 * 120.00115 * 3.90193 * 16 14 13 18 18 Si 1.86800 * 119.99816 * 183.89758 * 16 14 13 19 19 H 1.48508 * 109.46953 * 94.99724 * 18 16 14 20 20 H 1.48503 * 109.46965 * 214.99569 * 18 16 14 21 21 H 1.48492 * 109.47271 * 334.99837 * 18 16 14 22 22 C 1.46655 * 109.35762 * 358.63423 * 13 12 10 23 23 C 1.54052 * 106.94028 * 18.30837 * 22 13 12 24 24 H 1.08999 * 111.48049 * 91.53346 * 23 22 13 25 25 C 1.51844 * 109.44628 * 214.13107 * 23 22 13 26 26 C 1.49541 * 122.54978 * 184.11740 * 7 5 4 27 27 C 1.39762 * 117.70838 * 0.02562 * 4 3 2 28 28 C 1.50700 * 120.17322 * 179.97438 * 27 4 3 29 29 N 1.31894 * 119.65901 * 359.97438 * 27 4 3 30 30 N 1.28283 * 122.32331 * 0.02562 * 29 27 4 31 31 H 1.08998 * 109.47032 * 90.00466 * 1 2 3 32 32 H 1.08998 * 109.46957 * 210.00350 * 1 2 3 33 33 H 1.09003 * 109.47588 * 330.00113 * 1 2 3 34 34 H 1.07997 * 121.09631 * 0.04043 * 3 2 1 35 35 H 1.09004 * 108.52984 * 244.18635 * 8 7 5 36 36 H 1.09005 * 108.52717 * 1.71630 * 8 7 5 37 37 H 1.09004 * 109.13498 * 322.23190 * 9 8 7 38 38 H 1.08998 * 108.91327 * 203.35583 * 9 8 7 39 39 H 1.09007 * 109.74372 * 222.41668 * 12 10 9 40 40 H 1.08991 * 109.74767 * 343.07721 * 12 10 9 41 41 H 0.96997 * 119.99474 * 179.97438 * 17 16 14 42 42 H 1.09001 * 109.96826 * 258.93773 * 22 13 12 43 43 H 1.08994 * 109.96849 * 137.67714 * 22 13 12 44 44 H 1.09001 * 109.01309 * 54.29667 * 25 23 22 45 45 H 1.08995 * 108.94964 * 295.46419 * 25 23 22 46 46 H 1.09006 * 110.26704 * 9.14119 * 26 7 5 47 47 H 1.08998 * 110.27391 * 131.09453 * 26 7 5 48 48 H 1.09002 * 109.47172 * 94.35848 * 28 27 4 49 49 H 1.09002 * 109.47426 * 214.36352 * 28 27 4 50 50 H 1.09003 * 109.46848 * 334.36786 * 28 27 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2000 1.1998 0.0000 4 6 3.5997 1.1461 -0.0006 5 6 4.4139 2.3836 -0.0066 6 8 5.2701 2.5518 0.8390 7 7 4.2050 3.3231 -0.9502 8 6 3.1571 3.2185 -1.9251 9 6 2.1923 4.3956 -1.9245 10 6 2.7280 5.5599 -2.7259 11 1 3.3139 5.1980 -3.5708 12 6 1.5872 6.4673 -3.2039 13 7 1.5597 7.6554 -2.3450 14 6 0.6947 8.7087 -2.4782 15 1 0.0614 8.7804 -3.3500 16 6 0.6320 9.6840 -1.4925 17 7 1.4571 9.6384 -0.4680 18 14 -0.6233 11.0615 -1.6201 19 1 -1.8356 10.7000 -0.8423 20 1 -0.0408 12.3141 -1.0752 21 1 -0.9915 11.2653 -3.0442 22 6 2.6036 7.5396 -1.3215 23 6 3.6009 6.4747 -1.8160 24 1 4.4124 6.9234 -2.3890 25 6 4.1499 5.7056 -0.6274 26 6 5.0516 4.5505 -1.0648 27 6 4.2017 -0.1153 -0.0016 28 6 5.7037 -0.2377 -0.0028 29 7 3.4484 -1.1979 -0.0016 30 7 2.1668 -1.1418 -0.0010 31 1 -0.3633 -0.0001 -1.0276 32 1 -0.3633 -0.8899 0.5139 33 1 -0.3634 0.8900 0.5138 34 1 1.6781 2.1453 0.0007 35 1 3.6100 3.1383 -2.9133 36 1 2.5934 2.3059 -1.7311 37 1 2.0243 4.7194 -0.8973 38 1 1.2436 4.0750 -2.3549 39 1 1.7616 6.7645 -4.2380 40 1 0.6382 5.9365 -3.1286 41 1 1.4134 10.3202 0.2205 42 1 2.1635 7.2262 -0.3748 43 1 3.1113 8.4961 -1.1978 44 1 3.3177 5.3063 -0.0477 45 1 4.7247 6.3867 0.0000 46 1 5.9162 4.4758 -0.4052 47 1 5.3754 4.6910 -2.0960 48 1 6.0603 -0.3456 1.0215 49 1 5.9965 -1.1125 -0.5835 50 1 6.1407 0.6564 -0.4473 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000946607949.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:32:56 Heat of formation + Delta-G solvation = 34.525012 kcal Electronic energy + Delta-G solvation = -31262.092301 eV Core-core repulsion = 27289.772779 eV Total energy + Delta-G solvation = -3972.319523 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.64502 -41.31436 -39.90665 -37.44633 -35.59371 -35.20018 -34.61158 -33.42797 -32.44346 -30.98020 -29.16219 -28.94192 -27.90585 -26.61663 -25.52898 -24.48426 -24.17900 -23.28968 -21.94892 -20.79815 -19.73074 -18.98690 -18.89696 -18.56349 -17.43040 -16.96753 -16.90776 -16.50392 -16.36558 -16.03389 -15.55328 -15.39649 -15.10997 -14.73697 -14.57031 -14.44341 -14.37120 -14.29681 -13.91041 -13.64975 -13.48268 -13.40029 -13.34742 -13.12747 -13.09836 -12.86724 -12.71144 -12.53393 -12.37607 -12.12418 -12.10665 -11.84748 -11.79142 -11.66785 -11.44843 -11.28732 -11.01275 -11.00325 -10.67341 -10.62843 -10.56868 -9.80178 -8.80855 -7.84246 -5.20953 -0.72225 -0.29685 1.31283 1.45655 1.46414 1.55625 1.67013 2.29174 2.49576 2.81623 3.07060 3.21075 3.32286 3.36896 3.65070 3.68523 3.70335 3.81243 3.92385 4.00212 4.04370 4.14340 4.20827 4.26608 4.35290 4.44981 4.58295 4.60513 4.66153 4.68450 4.72069 4.73892 4.75363 4.76405 4.89503 4.97622 5.04387 5.07291 5.07977 5.10613 5.13112 5.20410 5.26987 5.29636 5.39739 5.52006 5.63078 5.76971 5.84092 6.25573 6.27254 6.80547 7.13661 7.52143 7.83897 8.45748 9.24075 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.016599 B = 0.002812 C = 0.002584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1686.406261 B = 9953.375321 C =10832.785688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.066 3.934 3 C -0.077 4.077 4 C -0.127 4.127 5 C 0.574 3.426 6 O -0.553 6.553 7 N -0.592 5.592 8 C 0.100 3.900 9 C -0.120 4.120 10 C -0.078 4.078 11 H 0.103 0.897 12 C 0.135 3.865 13 N -0.625 5.625 14 C -0.241 4.241 15 H 0.080 0.920 16 C -0.064 4.064 17 N -0.948 5.948 18 Si 0.974 3.026 19 H -0.288 1.288 20 H -0.296 1.296 21 H -0.267 1.267 22 C 0.190 3.810 23 C -0.097 4.097 24 H 0.076 0.924 25 C -0.116 4.116 26 C 0.124 3.876 27 C 0.098 3.902 28 C -0.097 4.097 29 N -0.260 5.260 30 N -0.253 5.253 31 H 0.104 0.896 32 H 0.087 0.913 33 H 0.098 0.902 34 H 0.176 0.824 35 H 0.091 0.909 36 H 0.088 0.912 37 H 0.054 0.946 38 H 0.091 0.909 39 H 0.023 0.977 40 H 0.027 0.973 41 H 0.245 0.755 42 H -0.013 1.013 43 H 0.026 0.974 44 H 0.060 0.940 45 H 0.059 0.941 46 H 0.089 0.911 47 H 0.108 0.892 48 H 0.091 0.909 49 H 0.099 0.901 50 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.245 -19.628 -3.559 20.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.079 4.079 3 C -0.106 4.106 4 C -0.142 4.142 5 C 0.361 3.639 6 O -0.431 6.431 7 N -0.324 5.324 8 C -0.023 4.023 9 C -0.158 4.158 10 C -0.097 4.097 11 H 0.121 0.879 12 C 0.010 3.990 13 N -0.351 5.351 14 C -0.370 4.370 15 H 0.098 0.902 16 C -0.258 4.258 17 N -0.597 5.597 18 Si 0.802 3.198 19 H -0.215 1.215 20 H -0.223 1.223 21 H -0.192 1.192 22 C 0.065 3.935 23 C -0.116 4.116 24 H 0.095 0.905 25 C -0.154 4.154 26 C 0.003 3.997 27 C -0.047 4.047 28 C -0.155 4.155 29 N -0.101 5.101 30 N -0.095 5.095 31 H 0.122 0.878 32 H 0.105 0.895 33 H 0.117 0.883 34 H 0.194 0.806 35 H 0.109 0.891 36 H 0.106 0.894 37 H 0.073 0.927 38 H 0.110 0.890 39 H 0.041 0.959 40 H 0.045 0.955 41 H 0.054 0.946 42 H 0.005 0.995 43 H 0.045 0.955 44 H 0.078 0.922 45 H 0.078 0.922 46 H 0.107 0.893 47 H 0.126 0.874 48 H 0.110 0.890 49 H 0.117 0.883 50 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 4.572 -21.054 -3.026 21.756 hybrid contribution -0.733 2.948 0.487 3.077 sum 3.839 -18.106 -2.539 18.681 Atomic orbital electron populations 1.20871 0.84351 1.05367 1.05359 1.23351 1.00845 0.89011 0.94653 1.22822 0.92451 1.01617 0.93704 1.21066 0.95351 0.94921 1.02819 1.17907 0.82696 0.82316 0.80998 1.90806 1.35339 1.79134 1.37816 1.47977 1.32221 1.21409 1.30744 1.21165 0.89245 0.98981 0.92937 1.21500 0.99113 0.94155 1.01066 1.21771 0.95473 0.94249 0.98198 0.87886 1.21373 0.96778 0.87420 0.93447 1.44508 1.37637 1.18578 1.34356 1.19423 1.14194 1.00126 1.03252 0.90236 1.25642 1.01337 1.02124 0.96650 1.70194 1.39924 1.36454 1.13135 0.85125 0.78462 0.78285 0.77883 1.21520 1.22324 1.19168 1.20894 0.87752 0.95457 0.89420 1.22276 0.97175 0.95906 0.96266 0.90539 1.21722 0.99287 0.96906 0.97516 1.22339 0.92942 0.80657 1.03729 1.23209 1.00159 0.88411 0.92934 1.20748 0.85622 1.04475 1.04669 1.72970 0.99553 1.26760 1.10858 1.72747 1.01670 1.26264 1.08858 0.87767 0.89453 0.88286 0.80645 0.89115 0.89378 0.92690 0.89039 0.95884 0.95528 0.94572 0.99532 0.95517 0.92168 0.92213 0.89257 0.87358 0.89047 0.88278 0.90365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.08 10.19 71.24 0.73 -0.35 16 2 C 0.07 1.19 6.86 42.63 0.29 1.48 16 3 C -0.08 -1.36 7.37 22.79 0.17 -1.19 16 4 C -0.13 -2.74 5.04 -19.83 -0.10 -2.84 16 5 C 0.57 13.71 6.29 86.87 0.55 14.26 16 6 O -0.55 -16.68 15.76 -3.76 -0.06 -16.74 16 7 N -0.59 -12.14 2.61 -825.94 -2.15 -14.30 16 8 C 0.10 1.65 5.24 86.67 0.45 2.10 16 9 C -0.12 -2.59 4.79 29.73 0.14 -2.45 16 10 C -0.08 -2.08 2.79 -10.30 -0.03 -2.11 16 11 H 0.10 2.10 7.67 -2.38 -0.02 2.09 16 12 C 0.13 4.91 6.82 86.49 0.59 5.50 16 13 N -0.62 -30.61 3.38 -698.47 -2.36 -32.97 16 14 C -0.24 -13.16 10.23 84.03 0.86 -12.30 16 15 H 0.08 4.17 7.83 -2.91 -0.02 4.14 16 16 C -0.06 -3.61 5.49 84.86 0.47 -3.15 16 17 N -0.95 -56.37 10.32 21.65 0.22 -56.14 16 18 Si 0.97 45.09 29.56 68.60 2.03 47.12 16 19 H -0.29 -13.20 7.11 99.48 0.71 -12.49 16 20 H -0.30 -13.88 7.11 99.48 0.71 -13.18 16 21 H -0.27 -11.63 7.11 99.48 0.71 -10.93 16 22 C 0.19 8.90 4.92 86.71 0.43 9.33 16 23 C -0.10 -3.09 2.94 -9.86 -0.03 -3.12 16 24 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 25 C -0.12 -3.22 4.50 30.19 0.14 -3.09 16 26 C 0.12 2.62 6.15 85.76 0.53 3.14 16 27 C 0.10 2.19 6.91 42.92 0.30 2.49 16 28 C -0.10 -1.76 9.52 71.24 0.68 -1.08 16 29 N -0.26 -6.47 11.42 -46.94 -0.54 -7.00 16 30 N -0.25 -5.96 11.40 -47.69 -0.54 -6.50 16 31 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 33 H 0.10 0.77 8.09 -2.39 -0.02 0.75 16 34 H 0.18 2.46 7.44 -2.91 -0.02 2.44 16 35 H 0.09 1.19 7.68 -2.38 -0.02 1.17 16 36 H 0.09 1.25 4.41 -2.38 -0.01 1.24 16 37 H 0.05 1.49 5.87 -2.38 -0.01 1.48 16 38 H 0.09 1.73 7.53 -2.39 -0.02 1.71 16 39 H 0.02 0.83 8.14 -2.38 -0.02 0.81 16 40 H 0.03 0.95 7.40 -2.39 -0.02 0.94 16 41 H 0.24 14.25 8.31 -92.71 -0.77 13.48 16 42 H -0.01 -0.70 7.58 -2.39 -0.02 -0.72 16 43 H 0.03 1.47 6.73 -2.39 -0.02 1.45 16 44 H 0.06 1.87 5.47 -2.39 -0.01 1.85 16 45 H 0.06 1.77 8.14 -2.39 -0.02 1.76 16 46 H 0.09 1.98 7.34 -2.38 -0.02 1.97 16 47 H 0.11 1.79 7.82 -2.39 -0.02 1.78 16 48 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 49 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 50 H 0.08 1.43 6.69 -2.39 -0.02 1.41 16 Total: -1.00 -73.40 382.64 3.70 -69.70 By element: Atomic # 1 Polarization: 9.25 SS G_CDS: 0.95 Total: 10.21 kcal Atomic # 6 Polarization: 0.48 SS G_CDS: 6.15 Total: 6.63 kcal Atomic # 7 Polarization: -111.55 SS G_CDS: -5.37 Total: -116.92 kcal Atomic # 8 Polarization: -16.68 SS G_CDS: -0.06 Total: -16.74 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 2.03 Total: 47.12 kcal Total: -73.40 3.70 -69.70 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000946607949.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.222 kcal (2) G-P(sol) polarization free energy of solvation -73.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.697 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds